View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2964_low_40 (Length: 381)
Name: NF2964_low_40
Description: NF2964
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2964_low_40 |
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Alignment Details
Target: chr8 (Bit Score: 54; Significance: 6e-22; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 150 - 211
Target Start/End: Complemental strand, 9756290 - 9756229
Alignment:
| Q |
150 |
atcagcttgaatccaacccttcttctgttcgaattctgttccaatcagcttgaatcaaaccc |
211 |
Q |
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| T |
9756290 |
atcagcttgaatccaacccttcttctatttgaattctgttccaatcagcttgaatcaaaccc |
9756229 |
T |
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Target: chr8; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 22 - 80
Target Start/End: Complemental strand, 9756421 - 9756363
Alignment:
| Q |
22 |
atacaacatctttttcccaataaaaacaaactgacaacaaatctcctttcctttcctct |
80 |
Q |
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| T |
9756421 |
atacaacatctttttcccaataaaaacaaactcccaacaaatctcctttcctttcctct |
9756363 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 54; Significance: 6e-22; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 150 - 211
Target Start/End: Original strand, 5576008 - 5576069
Alignment:
| Q |
150 |
atcagcttgaatccaacccttcttctgttcgaattctgttccaatcagcttgaatcaaaccc |
211 |
Q |
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| T |
5576008 |
atcagcttgaatccaacccttcttctgttcgatttatgttccaatcagcttgaatcaaaccc |
5576069 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 150 - 207
Target Start/End: Original strand, 51675736 - 51675792
Alignment:
| Q |
150 |
atcagcttgaatccaacccttcttctgttcgaattctgttccaatcagcttgaatcaa |
207 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
51675736 |
atcagcttgaatccaacc-ttcttctgttcgaattctgttccaatcagcttgaatcaa |
51675792 |
T |
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