View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2964_low_42 (Length: 367)

Name: NF2964_low_42
Description: NF2964
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2964_low_42
NF2964_low_42
[»] chr6 (11 HSPs)
chr6 (183-290)||(16870423-16870530)
chr6 (183-291)||(16655603-16655711)
chr6 (183-291)||(16558593-16558702)
chr6 (154-225)||(16784791-16784862)
chr6 (184-284)||(17067012-17067112)
chr6 (186-259)||(16984995-16985065)
chr6 (28-75)||(16794869-16794916)
chr6 (176-293)||(16794747-16794858)
chr6 (25-71)||(17067131-17067177)
chr6 (47-75)||(16778854-16778882)
chr6 (19-71)||(17095651-17095703)
[»] scaffold0133 (2 HSPs)
scaffold0133 (28-73)||(10507-10552)
scaffold0133 (185-253)||(6055-6120)
[»] chr3 (1 HSPs)
chr3 (187-227)||(7055838-7055878)
[»] chr8 (1 HSPs)
chr8 (183-228)||(13375613-13375657)
[»] scaffold0144 (1 HSPs)
scaffold0144 (47-75)||(7441-7469)


Alignment Details
Target: chr6 (Bit Score: 88; Significance: 3e-42; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 183 - 290
Target Start/End: Complemental strand, 16870530 - 16870423
Alignment:
Q  183 cttccatgctgatatgatattctctgcacacattgtttaatataataagtctataatcacaccatataatttgatattatagtaacacataagacaaagg 282  Q
    ||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||| |||||| |||||||||||||||| ||||||||||    
T  16870530 cttccatgctgatatgatattatctgcacacattgttcaatataataagtctataatcacaccatctaattttatattatagtaacacaaaagacaaagg 16870431  T
Q  283 aatcaaat 290  Q
    ||||||||    
T  16870430 aatcaaat 16870423  T

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Target: chr6; HSP #2
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 183 - 291
Target Start/End: Original strand, 16655603 - 16655711
Alignment:
Q  183 cttccatgctgatatgatattctctgcacacattgtttaatataataagtctataatcacaccatataatttgatattatagtaacacataagacaaagg 282  Q
    |||||||||||||| |||||| ||||||||||||||| ||||||||||||||||||||||||||| | ||||||||||||||||||||| ||||||||||    
T  16655603 cttccatgctgataagatattatctgcacacattgttcaatataataagtctataatcacaccatctgatttgatattatagtaacacaaaagacaaagg 16655702  T
Q  283 aatcaaata 291  Q
    |||||||||    
T  16655703 aatcaaata 16655711  T

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Target: chr6; HSP #3
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 183 - 291
Target Start/End: Complemental strand, 16558702 - 16558593
Alignment:
Q  183 cttccatgctgatatgatattctctgcacacattgtttaatataataagtctataatcacaccatataa-tttgatattatagtaacacataagacaaag 281  Q
    ||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||| ||| ||| |||||||||||||||| |||||||||    
T  16558702 cttccatgctgatatgatattatctgcacacattgttcaatataataagtctataatcacaccatctaatttttatattatagtaacacaaaagacaaag 16558603  T
Q  282 gaatcaaata 291  Q
    ||||||||||    
T  16558602 gaatcaaata 16558593  T

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Target: chr6; HSP #4
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 154 - 225
Target Start/End: Original strand, 16784791 - 16784862
Alignment:
Q  154 gggtattgagttgggcggtggcagaattgcttccatgctgatatgatattctctgcacacattgtttaatat 225  Q
    |||||||||| ||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  16784791 gggtattgagatgggcggtgccagaattgcttccatgctgatttgatattctctgcacacattgtttaatat 16784862  T

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Target: chr6; HSP #5
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 184 - 284
Target Start/End: Original strand, 17067012 - 17067112
Alignment:
Q  184 ttccatgctgatatgatattctctgcacacattgtttaatataataagtctataatcacaccatataatttgatattatagtaacacataagacaaagga 283  Q
    |||||||||||| | ||||||||||||||||||||| ||||||||||||||| |||||||  ||||||||| ||  |||||||| ||| || | ||||||    
T  17067012 ttccatgctgatttaatattctctgcacacattgttcaatataataagtctaaaatcacagtatataattttattctatagtaagacaaaaaagaaagga 17067111  T
Q  284 a 284  Q
    |    
T  17067112 a 17067112  T

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Target: chr6; HSP #6
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 186 - 259
Target Start/End: Original strand, 16984995 - 16985065
Alignment:
Q  186 ccatgctgatatgatattctctgcacacattgtttaatataataagtctataatcacaccatataatttgatat 259  Q
    ||||||||||||||||||||||||||| |||||| |||   ||||||||| |||||||||||||||||||||||    
T  16984995 ccatgctgatatgatattctctgcacatattgttcaat---ataagtctaaaatcacaccatataatttgatat 16985065  T

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Target: chr6; HSP #7
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 28 - 75
Target Start/End: Original strand, 16794869 - 16794916
Alignment:
Q  28 aattaaattaccacaaatcgttggttctgcatcagattgcaatttgaa 75  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||    
T  16794869 aattaaattaccacaaattgttggttctgcatcagattgcaatttgaa 16794916  T

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Target: chr6; HSP #8
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 176 - 293
Target Start/End: Original strand, 16794747 - 16794858
Alignment:
Q  176 agaattgcttccatgctgatatgatattctctgcacacattgtttaatataataagtctataatcacaccatataatttgatattatagtaacacataag 275  Q
    ||||||||||||||| |||||| |||||||||||| ||||||||||||   ||||||||| ||| | | |||   |||||||| |||||||| ||| |||    
T  16794747 agaattgcttccatgttgatataatattctctgcagacattgtttaat---ataagtctaaaataaaatcat---atttgatactatagtaaaacaaaag 16794840  T
Q  276 acaaaggaatcaaatatt 293  Q
    | |||||||| |||||||    
T  16794841 agaaaggaatgaaatatt 16794858  T

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Target: chr6; HSP #9
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 25 - 71
Target Start/End: Original strand, 17067131 - 17067177
Alignment:
Q  25 ttaaattaaattaccacaaatcgttggttctgcatcagattgcaatt 71  Q
    ||||||||||||||||||||| ||||||| |||||||||||||||||    
T  17067131 ttaaattaaattaccacaaattgttggttttgcatcagattgcaatt 17067177  T

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Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 47 - 75
Target Start/End: Original strand, 16778854 - 16778882
Alignment:
Q  47 gttggttctgcatcagattgcaatttgaa 75  Q
    |||||||||||||||||||||||||||||    
T  16778854 gttggttctgcatcagattgcaatttgaa 16778882  T

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Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 19 - 71
Target Start/End: Original strand, 17095651 - 17095703
Alignment:
Q  19 attaaattaaattaaattaccacaaatcgttggttctgcatcagattgcaatt 71  Q
    ||||||||||||||||||||||| ||  ||||||| |||||||| || |||||    
T  17095651 attaaattaaattaaattaccacgaaatgttggttttgcatcagtttccaatt 17095703  T

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Target: scaffold0133 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: scaffold0133
Description:

Target: scaffold0133; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 28 - 73
Target Start/End: Original strand, 10507 - 10552
Alignment:
Q  28 aattaaattaccacaaatcgttggttctgcatcagattgcaatttg 73  Q
    |||||||||||||| ||| |||||||||||||||||||||||||||    
T  10507 aattaaattaccactaattgttggttctgcatcagattgcaatttg 10552  T

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Target: scaffold0133; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 185 - 253
Target Start/End: Original strand, 6055 - 6120
Alignment:
Q  185 tccatgctgatatgatattctctgcacacattgtttaatataataagtctataatcacaccatataatt 253  Q
    |||||| || ||| ||||||||||||||||||||| |||   ||||||||| |||||||||||||||||    
T  6055 tccatgttgttataatattctctgcacacattgttcaat---ataagtctaaaatcacaccatataatt 6120  T

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Target: chr3 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 187 - 227
Target Start/End: Complemental strand, 7055878 - 7055838
Alignment:
Q  187 catgctgatatgatattctctgcacacattgtttaatataa 227  Q
    ||||||||||||||||||||||||| ||||||| |||||||    
T  7055878 catgctgatatgatattctctgcacccattgttcaatataa 7055838  T

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Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 183 - 228
Target Start/End: Original strand, 13375613 - 13375657
Alignment:
Q  183 cttccatgctgatatgatattctctgcacacattgtttaatataat 228  Q
    |||||||| |||||||||||||||||||| ||||||| ||||||||    
T  13375613 cttccatgttgatatgatattctctgcac-cattgttcaatataat 13375657  T

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Target: scaffold0144 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0144
Description:

Target: scaffold0144; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 47 - 75
Target Start/End: Original strand, 7441 - 7469
Alignment:
Q  47 gttggttctgcatcagattgcaatttgaa 75  Q
    |||||||||||||||||||||||||||||    
T  7441 gttggttctgcatcagattgcaatttgaa 7469  T

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