View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2964_low_43 (Length: 358)
Name: NF2964_low_43
Description: NF2964
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2964_low_43 |
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| [»] scaffold0115 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 289; Significance: 1e-162; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 1 - 350
Target Start/End: Complemental strand, 9470215 - 9469869
Alignment:
| Q |
1 |
aatgcaccaaccacaacatatcataaatggaacacaaatacttgctttcnnnnnnnnnnnnngactaacatgaacaagtgttgtgacaattgattctttt |
100 |
Q |
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| T |
9470215 |
aatgcaccaaccacaacatatcataaatggaacacaaacacttgctttcaaaaaatgaaaaagactaacatgaacaagtgttgtgacaattgattctttt |
9470116 |
T |
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| Q |
101 |
ttaagtttgaattatagaaaaatgaaatttagagaaacaaggagtcgatataaccttgaataactagttcaatcagacgttggcattgcgtcaatattcc |
200 |
Q |
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| T |
9470115 |
ttaagtttgaat---agaaaaatgaaatttagagaaacaaggagtcgatataaccttgaataactagttcaatcagacgttggcattgcgtcaatattcc |
9470019 |
T |
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| Q |
201 |
aaatagcaacatgtttttaataaaatgaatcttattagatcttactttcatataaaatctgcctagtgatttagttttgaacaacatcaattcatcttca |
300 |
Q |
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| T |
9470018 |
aaatagcaacatgtttttaataaaatgaatcttattagatcatactttcatataaaatctgcctagtgatttagttttgaacaacatcaattcatcttca |
9469919 |
T |
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| Q |
301 |
accatatagaacacaaacagaataccaaaaaattcaaggatttgatgatg |
350 |
Q |
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| T |
9469918 |
accatatagaacacaaacagaataccaaaaaattcaaggatttgatgatg |
9469869 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 71; Significance: 4e-32; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 70 - 189
Target Start/End: Original strand, 31001786 - 31001903
Alignment:
| Q |
70 |
atgaacaagtgttgtgacaattgattcttttttaagtttgaattatagaaaaatgaaatttagagaaacaaggagt-cgatataaccttgaataactagt |
168 |
Q |
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| T |
31001786 |
atgaacaaatgttgtgacaacttattcttctttaagtttgaat---agaaaaatgaaatttagagaaacaaggattacgatataaccttgaataactagt |
31001882 |
T |
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| Q |
169 |
tcaatcagacgttggcattgc |
189 |
Q |
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| T |
31001883 |
tcaatcggactttggcattgc |
31001903 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 64 - 189
Target Start/End: Original strand, 31003405 - 31003528
Alignment:
| Q |
64 |
actaacatgaacaagtgttgtgacaattgattcttttttaagtttgaattatagaaaaatgaaatttagagaaacaaggagt-cgatataaccttgaata |
162 |
Q |
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||||| |||||||| ||||||||||| | |||||| ||||||||||||| |||||||||||||||||||||||| ||| | | |||||| |||||||| |
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| T |
31003405 |
actaatatgaacaaatgttgtgacaacttattcttctttaagtttgaat---agaaaaatgaaatttagagaaacagggattacaatataatcttgaata |
31003501 |
T |
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| Q |
163 |
actagttcaatcagacgttggcattgc |
189 |
Q |
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| T |
31003502 |
actagttcaatcagactttggcattgc |
31003528 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 67; Significance: 1e-29; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 1 - 189
Target Start/End: Complemental strand, 2530991 - 2530793
Alignment:
| Q |
1 |
aatgcaccaaccacaacatatcataaatggaacacaaatacttgctttcnnnnnnnnnnnnngactaacatgaacaagtgttgtgacaattgattctttt |
100 |
Q |
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|||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||| |||| |
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| T |
2530991 |
aatgcaccaaccacaacatagcataaatggaacacaaatacttgctttcaaaacatgaaaaatactaacatgtacaagtgttgtgacaattgattttttt |
2530892 |
T |
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| Q |
101 |
tt--------------aagtttgaattatagaaaaatgaaatttagagaaacaaggagtcgatataaccttgaataactagttcaatcagacgttggcat |
186 |
Q |
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| T |
2530891 |
ttttttttttttttttaagtttgaatt---gaaaaatgaaatttagagaaacaaggagtgg-tataaccttgaataactagttcaatcagactttgacat |
2530796 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0115 (Bit Score: 47; Significance: 9e-18; HSPs: 1)
Name: scaffold0115
Description:
Target: scaffold0115; HSP #1
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 2 - 187
Target Start/End: Original strand, 38973 - 39165
Alignment:
| Q |
2 |
atgcaccaaccacaacatatcataaatggaacacaaatacttgctttcnnnnnnnnnnnnngactaacatgaacaagtgttgtgacaattgat------- |
94 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||| ||| ||||||||||||||| |
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| T |
38973 |
atgcaccaaccacaacatagcataaatggaacacaaatacttgctttcaaaacatgaaaaatactaacatga--aagagttgtgacaattgatttatttt |
39070 |
T |
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| Q |
95 |
--tcttttttaagtttgaattatagaaaaatgaaatttagagaaacaaggagt-cgatataaccttga--ataactagttcaatcagacgttggcatt |
187 |
Q |
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| T |
39071 |
tattttttttaagtttga---atagaaaaatgaaatttagagaaacaaggagtatggtataaccttgaatataattagttccatcagactttggcatt |
39165 |
T |
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