View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2964_low_45 (Length: 354)
Name: NF2964_low_45
Description: NF2964
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2964_low_45 |
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Alignment Details
Target: chr1 (Bit Score: 300; Significance: 1e-169; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 300; E-Value: 1e-169
Query Start/End: Original strand, 17 - 337
Target Start/End: Original strand, 3879432 - 3879752
Alignment:
| Q |
17 |
gaatattagattggcgtactgtcgcaagtatgtttctgcttcattttctctctccccagaaaagcactataattctattattgatccgtctctctctatt |
116 |
Q |
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| T |
3879432 |
gaatattagattggcgtactgtcgcaagtatgtttctgcttcattttctctctccccagaaaagcactataattctattattgatccgtctctctctatt |
3879531 |
T |
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| Q |
117 |
gcttttcactttctgtttaagtcaataccaaatccttttttctattgttgcgcctaatttannnnnnngaatggtttcctttgcagattagcagatttga |
216 |
Q |
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| T |
3879532 |
gcttttcactttctgtttaagtcaataccaaatccttttttctattgttgcgcctaatttatttttttgaatggtttcctttgcagattagcagatttga |
3879631 |
T |
|
| Q |
217 |
acttgagggctatatcgctttcttctatacaagtgtctgactgctctgtacttcaccggatcaatatcacttcaaattcacttcaagtatgtgttataca |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3879632 |
acttgagggctatatcgctttcttctatacaagtgtctgactgctctgtacttcaccggatcaatatcacttcaaattcacttcaagtatgtgttataca |
3879731 |
T |
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| Q |
317 |
cttatacttatgtcttgtttc |
337 |
Q |
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||||||||||||||||||||| |
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| T |
3879732 |
cttatacttatgtcttgtttc |
3879752 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 104; E-Value: 9e-52
Query Start/End: Original strand, 185 - 308
Target Start/End: Original strand, 3865609 - 3865732
Alignment:
| Q |
185 |
gaatggtttcctttgcagattagcagatttgaacttgagggctatatcgctttcttctatacaagtgtctgactgctctgtacttcaccggatcaatatc |
284 |
Q |
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||||||||||||| ||||||||||||||||||| ||||| |||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||| |
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| T |
3865609 |
gaatggtttccttggcagattagcagatttgaatttgagagctatatcgctttcttctatacaagtgtctaactgctctgtactccaccggatcaatatc |
3865708 |
T |
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| Q |
285 |
acttcaaattcacttcaagtatgt |
308 |
Q |
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|||||||||||||||||||||||| |
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| T |
3865709 |
acttcaaattcacttcaagtatgt |
3865732 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 17 - 80
Target Start/End: Original strand, 3865450 - 3865513
Alignment:
| Q |
17 |
gaatattagattggcgtactgtcgcaagtatgtttctgcttcattttctctctccccagaaaag |
80 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3865450 |
gaatattagattggtgtactgtcgcaagtatgtttctgcttcattttctctctccccagaaaag |
3865513 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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