View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2964_low_46 (Length: 353)

Name: NF2964_low_46
Description: NF2964
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2964_low_46
NF2964_low_46
[»] chr5 (2 HSPs)
chr5 (166-204)||(38685296-38685334)
chr5 (171-204)||(10948766-10948799)
[»] chr4 (1 HSPs)
chr4 (159-199)||(18814805-18814845)
[»] chr6 (1 HSPs)
chr6 (161-198)||(24105283-24105320)
[»] chr3 (1 HSPs)
chr3 (165-202)||(2304055-2304092)


Alignment Details
Target: chr5 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 166 - 204
Target Start/End: Original strand, 38685296 - 38685334
Alignment:
Q  166 catgacactgacacatgtggttatattcaattacttcca 204  Q
    ||||||||||||||||||||||| |||||||||||||||    
T  38685296 catgacactgacacatgtggttacattcaattacttcca 38685334  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 171 - 204
Target Start/End: Original strand, 10948766 - 10948799
Alignment:
Q  171 cactgacacatgtggttatattcaattacttcca 204  Q
    |||| |||||||||||||||||||||||||||||    
T  10948766 cactaacacatgtggttatattcaattacttcca 10948799  T

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Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 159 - 199
Target Start/End: Original strand, 18814805 - 18814845
Alignment:
Q  159 acaccaacatgacactgacacatgtggttatattcaattac 199  Q
    ||||||||| |||||| ||||||||||||||||||||||||    
T  18814805 acaccaacacgacactaacacatgtggttatattcaattac 18814845  T

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Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 161 - 198
Target Start/End: Original strand, 24105283 - 24105320
Alignment:
Q  161 accaacatgacactgacacatgtggttatattcaatta 198  Q
    ||||||||||||||||||||| || |||||||||||||    
T  24105283 accaacatgacactgacacatttgattatattcaatta 24105320  T

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Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 165 - 202
Target Start/End: Original strand, 2304055 - 2304092
Alignment:
Q  165 acatgacactgacacatgtggttatattcaattacttc 202  Q
    |||||| |||||||||||||||||| ||||||||||||    
T  2304055 acatgatactgacacatgtggttatgttcaattacttc 2304092  T

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