View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2964_low_49 (Length: 337)
Name: NF2964_low_49
Description: NF2964
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2964_low_49 |
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Alignment Details
Target: chr1 (Bit Score: 314; Significance: 1e-177; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 314; E-Value: 1e-177
Query Start/End: Original strand, 1 - 326
Target Start/End: Complemental strand, 9470864 - 9470539
Alignment:
| Q |
1 |
cgtgtatcgctcatcagtggttctactcaggcacctagtttcttctgtacgaagcatataaagctaataacatcacatacaaatggaattcgcccgtaca |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
9470864 |
cgtgtatcgctcatcagtggttctactcaggcacctagtttcttctgtacgaagcatataaagctaataacatcacatacaaattgaattcgcccgtaca |
9470765 |
T |
|
| Q |
101 |
aatacgggaacaaccaaaaatatcattcacagtacagtagcattatactatatctaattcatatgaatctcaggtcagcaacaagtttagttatgtacat |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
9470764 |
aatacgggaacaaccaaaaatatcattcacagtacagtagcattatactatatctaattcatatgaatctcaggtcagcaacaagtttagttatgtacat |
9470665 |
T |
|
| Q |
201 |
agcaacaagttttcaaggccatttcgtgaatgtgtatagatagatagatagaaatcagtaattttccctaagtgcaatttcagttctgtgaatgatagag |
300 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||| |
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| T |
9470664 |
agcaacaagttttcaaggccatttcgtgaatgtgtatagatagatagatagaaatcagtaattttccctaagtgcaatttcaattctatgaatgatagag |
9470565 |
T |
|
| Q |
301 |
tatatactaaccattgcaactgaatt |
326 |
Q |
| |
|
|||||||||||||||||||||||||| |
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|
| T |
9470564 |
tatatactaaccattgcaactgaatt |
9470539 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 69 - 178
Target Start/End: Complemental strand, 53692925 - 53692821
Alignment:
| Q |
69 |
aacatcacatacaaatggaattcgcccgtacaaatacgggaacaaccaaaaatatcattcacagtacagtagcattatactatatctaattcatatgaat |
168 |
Q |
| |
|
||||||||| |||||| ||||||||| |||||||||| ||||||||||||| ||| ||| |||||||||||||||||||||||||||||| |||| |
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| T |
53692925 |
aacatcacacacaaattgaattcgcctgtacaaatacaggaacaaccaaaagaatccttc-----acagtagcattatactatatctaattcataagaat |
53692831 |
T |
|
| Q |
169 |
ctcaggtcag |
178 |
Q |
| |
|
|||||||||| |
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|
| T |
53692830 |
ctcaggtcag |
53692821 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 286 - 326
Target Start/End: Complemental strand, 40375691 - 40375651
Alignment:
| Q |
286 |
ctgtgaatgatagagtatatactaaccattgcaactgaatt |
326 |
Q |
| |
|
|||||| ||||||||||||||||||||||| |||||||||| |
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|
| T |
40375691 |
ctgtgactgatagagtatatactaaccattacaactgaatt |
40375651 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 293 - 326
Target Start/End: Original strand, 653570 - 653603
Alignment:
| Q |
293 |
tgatagagtatatactaaccattgcaactgaatt |
326 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||| |
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|
| T |
653570 |
tgattgagtatatactaaccattgcaactgaatt |
653603 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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