View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2964_low_5 (Length: 684)

Name: NF2964_low_5
Description: NF2964
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2964_low_5
NF2964_low_5
[»] chr1 (1 HSPs)
chr1 (18-683)||(49017771-49018435)


Alignment Details
Target: chr1 (Bit Score: 613; Significance: 0; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 613; E-Value: 0
Query Start/End: Original strand, 18 - 683
Target Start/End: Complemental strand, 49018435 - 49017771
Alignment:
Q  18 agtaaaatcacagaatccacatttccattgatcttcctcatcaacataactggcttctctctttccaagccaaaactcaagacaaatcctaatttcattc 117  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49018435 agtaaaatcacagaatccacatttccattgatcttcctcatcaacagaactggcttctctctttccaagccaaaactcaagacaaatcctaatttcattc 49018336  T
Q  118 tttatccaactaccctcatacacaaatttttcttcttccaacagtgagtgatccctctgagattcatatctcaacactagtttgtcattagcacggggta 217  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  49018335 tttatccaactaccctcatacacaaatttttcttcttccaacagtgagtgatccctctgagattcatatctcaacactagtttgtcattagcacggggca 49018236  T
Q  218 gcatcttaacacatattttggtaacaaatcaccacatcagcaagtgtcaatgctgagattccagaatcaacacacgctgttcgtagatctttacataaat 317  Q
    ||| |||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49018235 gcagctta-cacatattttggtaacaaatcaccacatcagcaattgtcaatgctgagattccagaatcaacacacgctgttcgtagatctttacataaat 49018137  T
Q  318 tacgtcgaggatttaactcgaaatattcaaacaatcttttagaagggaagtcacgaacaactaaattgtcccacaaatacttgtaacacattagttgaat 417  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49018136 tacgtcgaggatttaactcgaaatattcaaacaatcttttagaagggaagtcacgaacaactaaattgtcccacaaatacttgtaacacattagttgaat 49018037  T
Q  418 cctcccatttctttcttgtgattctgcaggaactgtatctcagtaacgagtctttgtttcgactaacatcggattatgatcnnnnnnngccttaggcatc 517  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       ||||||||||||    
T  49018036 cctcccatttcttttttgtgattctgcaggaactgtatctcagtaacgagtctttgtttcgactaacatcggattatgatctttttttgccttaggcatc 49017937  T
Q  518 cgaatttcatcaatctttaccaccatccatataccttgtgcaaaatcaaagcttattataggaagctcgcgagttagtccttcgaacaacagttgattca 617  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49017936 cgaatttcatcaatctttcccaccatccatataccttgtgcaaaatcaaagcttattataggaagctcgcgagttagtccttcgaacaacagttgattca 49017837  T
Q  618 caccattgatgaaatcaacaagtttcagtgccatatagtcttcagatgacttcacattcacttcca 683  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49017836 caccattgatgaaatcaacaagtttcagtgccatatagtcttcagatgacttcacattcacttcca 49017771  T

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