View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2964_low_52 (Length: 317)
Name: NF2964_low_52
Description: NF2964
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2964_low_52 |
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Alignment Details
Target: chr7 (Bit Score: 284; Significance: 1e-159; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 19 - 306
Target Start/End: Complemental strand, 42175965 - 42175678
Alignment:
| Q |
19 |
gatgtaaccgtagtcatttcccttttacagccagcaccagagacatttgaactttttgacgacattattctactttcagaaggtcaaattgtatatcaag |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42175965 |
gatgtaaccgtagtcatttcccttttacagccagcaccagagacatttgaactttttgacgacattattctactttcagaaggtcaaattgtatatcaag |
42175866 |
T |
|
| Q |
119 |
gtccgcgtgaaaatgtgctagagttcttcgaatacacgggctttaggtgcccagagagaaaatgtgttgctgatttcttacaagaagtaacatccaagaa |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42175865 |
gtccgcgtgaaaatgtgctagagttcttcgaatacacgggctttaggtgcccagagagaaaatgtgttgctgatttcttacaagaagtaacatccaagaa |
42175766 |
T |
|
| Q |
219 |
agaccaacaacaatactggtttagaagagatgaaccttatagatatgtttcagttcctgaattttttgagttctttcattcatctcat |
306 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
42175765 |
agaccaacaacaatactggtttagaagagatgaaccttatagatatgtttcagttcctgaattttttgagttctttcattcatttcat |
42175678 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 35 - 306
Target Start/End: Complemental strand, 42144830 - 42144559
Alignment:
| Q |
35 |
tttcccttttacagccagcaccagagacatttgaactttttgacgacattattctactttcagaaggtcaaattgtatatcaaggtccgcgtgaaaatgt |
134 |
Q |
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|||| ||||||||||||||||||||||||||||| || ||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
42144830 |
tttcgcttttacagccagcaccagagacatttgacctctttgacgacattattcttctttcagaaggtcaaatagtatatcaaggtccgcgtgaaaatgt |
42144731 |
T |
|
| Q |
135 |
gctagagttcttcgaatacacgggctttaggtgcccagagagaaaatgtgttgctgatttcttacaagaagtaacatccaagaaagaccaacaacaatac |
234 |
Q |
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||||||||||||||||||||| ||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
42144730 |
gctagagttcttcgaatacacaggctttaggtgtccagagagaaaaggtgttgctgatttcttacaagaagtaacatccaagaaagatcaacaacaatac |
42144631 |
T |
|
| Q |
235 |
tggtttagaagagatgaaccttatagatatgtttcagttcctgaattttttgagttctttcattcatctcat |
306 |
Q |
| |
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||||||| |||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||| |||| |
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| T |
42144630 |
tggtttaaaagagatgaaccttatagatatgtttcagttcctgaatttgttgatttctttcattcatttcat |
42144559 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 19 - 306
Target Start/End: Complemental strand, 42156793 - 42156506
Alignment:
| Q |
19 |
gatgtaaccgtagtcatttcccttttacagccagcaccagagacatttgaactttttgacgacattattctactttcagaaggtcaaattgtatatcaag |
118 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42156793 |
gatgtaaccgtagtcatttctcttttacagccagcaccagagacatttgaactctttgacgacattattctactttcagaaggtcaaattgtatatcaag |
42156694 |
T |
|
| Q |
119 |
gtccgcgtgaaaatgtgctagagttcttcgaatacacgggctttaggtgcccagagagaaaatgtgttgctgatttcttacaagaagtaacatccaagaa |
218 |
Q |
| |
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| || ||||| || || ||||||||||| |||||||| || |||||||| || ||||||||| | |||||||||||||||||||||||||||||||||| |
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| T |
42156693 |
gaccacgtgagaacgtactagagttctttgaatacacaggttttaggtgtcctgagagaaaagggattgctgatttcttacaagaagtaacatccaagaa |
42156594 |
T |
|
| Q |
219 |
agaccaacaacaatactggtttagaagagatgaaccttatagatatgtttcagttcctgaattttttgagttctttcattcatctcat |
306 |
Q |
| |
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||| ||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||| |||| ||||||||||||| |||| |
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| T |
42156593 |
agatcaacaacaatactggtttaaaatagatgaaccttatagatatgtttcagttcctgaatttgttgatttctttcattcatttcat |
42156506 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 34 - 301
Target Start/End: Complemental strand, 42135698 - 42135431
Alignment:
| Q |
34 |
atttcccttttacagccagcaccagagacatttgaactttttgacgacattattctactttcagaaggtcaaattgtatatcaaggtccgcgtgaaaatg |
133 |
Q |
| |
|
||||| ||| |||| ||||||||||||||||||||||| ||||| |||||||| |||||||||||||||||||||||||| ||||| || || ||||||| |
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| T |
42135698 |
atttctcttctacaaccagcaccagagacatttgaactctttgatgacattatcctactttcagaaggtcaaattgtataccaaggaccacgcgaaaatg |
42135599 |
T |
|
| Q |
134 |
tgctagagttcttcgaatacacgggctttaggtgcccagagagaaaatgtgttgctgatttcttacaagaagtaacatccaagaaagaccaacaacaata |
233 |
Q |
| |
|
|| || |||| || ||| || || || | || || |||||| | || |||||||| |||||||||||||||||||| ||||||||||||||||| |
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| T |
42135598 |
tgttacagttttttgaaaccatcggtttcaaatgtcctccaagaaaaggagtagctgattttttacaagaagtaacatccaaaaaagaccaacaacaata |
42135499 |
T |
|
| Q |
234 |
ctggtttagaagagatgaaccttatagatatgtttcagttcctgaattttttgagttctttcattcat |
301 |
Q |
| |
|
||||||||||||||| ||||||||| ||||||||||||| |||||||| |||| | |||| |||||| |
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| T |
42135498 |
ttggtttagaagagataaaccttataaatatgtttcagtttctgaatttgttgattcctttgattcat |
42135431 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 46 - 92
Target Start/End: Complemental strand, 39577366 - 39577320
Alignment:
| Q |
46 |
cagccagcaccagagacatttgaactttttgacgacattattctact |
92 |
Q |
| |
|
|||||| |||||||||| | ||| ||||||||||||||||||||||| |
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| T |
39577366 |
cagccaccaccagagacttatgatctttttgacgacattattctact |
39577320 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 49 - 134
Target Start/End: Complemental strand, 2900642 - 2900557
Alignment:
| Q |
49 |
ccagcaccagagacatttgaactttttgacgacattattctactttcagaaggtcaaattgtatatcaaggtccgcgtgaaaatgt |
134 |
Q |
| |
|
|||||||||||||| | |||||||||||| ||||||||||| | || || ||||||||||| |||||||| ||||||||| |||| |
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|
| T |
2900642 |
ccagcaccagagacttatgaactttttgatgacattattcttatatccgatggtcaaattgtctatcaaggaccgcgtgaacatgt |
2900557 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 46 - 134
Target Start/End: Original strand, 2874325 - 2874413
Alignment:
| Q |
46 |
cagccagcaccagagacatttgaactttttgacgacattattctactttcagaaggtcaaattgtatatcaaggtccgcgtgaaaatgt |
134 |
Q |
| |
|
||||||||||||||||| | |||||||||||| ||||||||||| | || || ||| ||||||| || ||||| || ||||||||||| |
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| T |
2874325 |
cagccagcaccagagacttatgaactttttgatgacattattcttttatctgatggtgaaattgtttaccaaggacctcgtgaaaatgt |
2874413 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 79 - 180
Target Start/End: Complemental strand, 34144516 - 34144416
Alignment:
| Q |
79 |
gacattattctactttcagaaggtcaaattgtatatcaaggtccgcgtgaaaatgtgctagagttcttcgaatacacgggctttaggtgcccagagagaa |
178 |
Q |
| |
|
|||||||| ||||||| ||||| ||||||||||| |||||||| | |||||||||||| ||||||| ||||||| || ||||| || || ||||||| |
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| T |
34144516 |
gacattatcctacttt-agaagctcaaattgtattccaaggtccacatgaaaatgtgcttcagttctttgaatacataggttttagatgtcccgagagaa |
34144418 |
T |
|
| Q |
179 |
aa |
180 |
Q |
| |
|
|| |
|
|
| T |
34144417 |
aa |
34144416 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 40 - 122
Target Start/End: Complemental strand, 41690575 - 41690493
Alignment:
| Q |
40 |
cttttacagccagcaccagagacatttgaactttttgacgacattattctactttcagaaggtcaaattgtatatcaaggtcc |
122 |
Q |
| |
|
|||||||| || |||||||| |||||||| |||||||| ||||| || |||||||||||||||| ||||| || |||||||| |
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| T |
41690575 |
cttttacaacctgcaccagaaacatttgatctttttgatgacataatcttactttcagaaggtcagattgtctaccaaggtcc |
41690493 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 103 - 207
Target Start/End: Complemental strand, 2163787 - 2163683
Alignment:
| Q |
103 |
caaattgtatatcaaggtccgcgtgaaaatgtgctagagttcttcgaatacacgggctttaggtgcccagagagaaaatgtgttgctgatttcttacaag |
202 |
Q |
| |
|
|||||||| |||||||| || | |||||||| |||||||| ||||| | | ||| || | ||| || || |||||| | ||||||||||||||||||| |
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| T |
2163787 |
caaattgtgtatcaaggaccaagagaaaatgtactagagtttttcgagtcaatgggattcaagtgtcctgaaagaaaaggagttgctgatttcttacaag |
2163688 |
T |
|
| Q |
203 |
aagta |
207 |
Q |
| |
|
||||| |
|
|
| T |
2163687 |
aagta |
2163683 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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