View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2964_low_56 (Length: 309)
Name: NF2964_low_56
Description: NF2964
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2964_low_56 |
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| [»] chr2 (6 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 277; Significance: 1e-155; HSPs: 6)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 1 - 309
Target Start/End: Original strand, 6132682 - 6132990
Alignment:
| Q |
1 |
tcatcatcatcttcaacgcgtggatatttgtatgcttgaatgttgaatttaaaggttttcaatcgagggcaacatcggccaatggcttcaaaagaatgat |
100 |
Q |
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| T |
6132682 |
tcatcatcatcttcaacgcgtggatatttgtatgcttgaatgttaaatttaaaggttttcaatcgagggcaacttcggccaatggcttcaaaagaatgat |
6132781 |
T |
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| Q |
101 |
gagttaggttgctgagtgatatatcaagttcctctaattgaggaagcttttcaacagcttcacaaaattcttgatccgttacgttatagcaacaagcaag |
200 |
Q |
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| T |
6132782 |
gagttaggttgctgagtgatatatcaagttcctctaattgaggaagctattcaacagcttcacaaaattcttgatccgttacgttatagcaacaagcaag |
6132881 |
T |
|
| Q |
201 |
acgaaggcgttgtagatgtcttgcaccgtaaaatgtcaagacagcaagatgagatactgttacatagatatgctaccaaaatccaccatacattgataaa |
300 |
Q |
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| T |
6132882 |
acgaaggcgttgtaaatgtcttgcactgtaaaatgtcaagatagcaagatgagatactgttacatagatatgccaccaaaatccaccatacattgatata |
6132981 |
T |
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| Q |
301 |
ctaactagt |
309 |
Q |
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| T |
6132982 |
ctaactagt |
6132990 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 1 - 281
Target Start/End: Complemental strand, 6053535 - 6053255
Alignment:
| Q |
1 |
tcatcatcatcttcaacgcgtggatatttgtatgcttgaatgttgaatttaaaggttttcaatcgagggcaacatcggccaatggcttcaaaagaatgat |
100 |
Q |
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| T |
6053535 |
tcatcatcatattgaatgtgtggatgtctgtacccttgactgttgaatttcaatgttttcaatcgagggcaacgtcggccaattggttcgaaaagacgat |
6053436 |
T |
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| Q |
101 |
gagttaggttgctgagtgatatatcaagttcctctaattgaggaagcttttcaacagcttcacaaaattcttgatccgttacgttatagcaacaagcaag |
200 |
Q |
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| T |
6053435 |
cggataagttgctgattgatatatcaagttcctctaagcaaggaaacttttcagcagcatcacacaatccttcatctgatatgctccagcaagatgcaag |
6053336 |
T |
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| Q |
201 |
acgaaggcgttgtagatgtcttgcaccgtaaaatgtcaagacagcaagatgagatactgttacatagatatgctaccaaaa |
281 |
Q |
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| T |
6053335 |
acgaaggcgttgtagatgacttgcgctgaaaaatgccaagacaacaagttgagatactgttacacagagatgctatcaaaa |
6053255 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 29 - 233
Target Start/End: Complemental strand, 6043431 - 6043227
Alignment:
| Q |
29 |
tgtatgcttgaatgttgaatttaaaggttttcaatcgagggcaacatcggccaatggcttcaaaagaatgatgagttaggttgctgagtgatatatcaag |
128 |
Q |
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||||| ||| ||||||||||||||||||||||||| ||||||||| ||||||||||||||| |||| | || | | | |||||| || ||||||||| |
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| T |
6043431 |
tgtatccttcaatgttgaatttaaaggttttcaattgagggcaacctcggccaatggcttccaaaggttcattggacaagctgctgattgttatatcaag |
6043332 |
T |
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| Q |
129 |
ttcctctaattgaggaagcttttcaacagcttcacaaaattcttgatccgttacgttatagcaacaagcaagacgaaggcgttgtagatgtcttgcaccg |
228 |
Q |
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| T |
6043331 |
ttcctccagctgaggaagcttttcagcaacttcacacaatccttcatctgttacgccatagcaacataaaagacgaaggcgtcgtacttgacttgcactg |
6043232 |
T |
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| Q |
229 |
taaaa |
233 |
Q |
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||||| |
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| T |
6043231 |
taaaa |
6043227 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 119 - 249
Target Start/End: Complemental strand, 6037895 - 6037765
Alignment:
| Q |
119 |
atatatcaagttcctctaattgaggaagcttttcaacagcttcacaaaattcttgatccgttacgttatagcaacaagcaagacgaaggcgttgtagatg |
218 |
Q |
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||||||||||||||||||| |||| || |||||| || ||||||| ||| ||| ||| ||||| |||||||||| |||||| |||||||| ||||||| |
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| T |
6037895 |
atatatcaagttcctctaagtgagaaaatttttcagcaacttcacacaatacttcatctgttaccctatagcaacatgcaagatgaaggcgtcgtagatg |
6037796 |
T |
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| Q |
219 |
tcttgcaccgtaaaatgtcaagacagcaaga |
249 |
Q |
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||||||| |||||||| ||| ||| ||||| |
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| T |
6037795 |
acttgcactgtaaaatggcaaaacaacaaga |
6037765 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 39 - 243
Target Start/End: Complemental strand, 6046722 - 6046518
Alignment:
| Q |
39 |
aatgttgaatttaaaggttttcaatcgagggcaacatcggccaatggcttcaaaagaatgatgagttaggttgctgagtgatatatcaagttcctctaat |
138 |
Q |
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| T |
6046722 |
aatgttgaatttgaaggttttcaactgaggacaacatcggccaatagcttctagaggatcattggataagctgtggattgtaatatcaagttcctccaag |
6046623 |
T |
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| Q |
139 |
tgaggaagcttttcaacagcttcacaaaattcttgatccgttacgttatagcaacaagcaagacgaaggcgttgtagatgtcttgcaccgtaaaatgtca |
238 |
Q |
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|||| ||||||| || || ||||||| ||| ||| ||| || || || ||||||| |||||| |||||||| ||||| |||||| ||||||||||| |
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| T |
6046622 |
tgagaaagctttccagcaacttcacacaatccttcatctgtcacattgtagcaacctaaaagacggaggcgttgaagatgatttgcactgtaaaatgtca |
6046523 |
T |
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| Q |
239 |
agaca |
243 |
Q |
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||||| |
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| T |
6046522 |
agaca |
6046518 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 44 - 83
Target Start/End: Complemental strand, 6037970 - 6037931
Alignment:
| Q |
44 |
tgaatttaaaggttttcaatcgagggcaacatcggccaat |
83 |
Q |
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| T |
6037970 |
tgaattcaagggttttcaatcgagggcaacatcggccaat |
6037931 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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