View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2964_low_68 (Length: 251)
Name: NF2964_low_68
Description: NF2964
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2964_low_68 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 224; Significance: 1e-123; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 8 - 251
Target Start/End: Complemental strand, 6407456 - 6407213
Alignment:
| Q |
8 |
gagcagagatatgtagcacctacattgtcacataataatagaggtggtttcgacaatggtatatgaagctcttgaagcaaattttgaagccacatgagtt |
107 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6407456 |
gagcagagatatgtagcacctacattgtcacataataatagaggtggtttcgacaatggtatatgaagctcttgaagcaaattttgaagccacatgagtt |
6407357 |
T |
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| Q |
108 |
caacagatgcagtggctacaacacggtattcagcctcggttgatgatcgtgctacagtacgttgttttcgtgatagccaagaaataggattacctccaaa |
207 |
Q |
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| T |
6407356 |
cagcagatgtagtggctacagcacggtattcagcctcagttgatgatcgtgctacagtacgttgtttttgtgatagccaagaaataggattacctccaaa |
6407257 |
T |
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| Q |
208 |
aaagataagatatgctgatgttgaggtgcggtcatccatatttc |
251 |
Q |
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| T |
6407256 |
aaagataagatatgctgatgttgaggtgcggtcatccatatttc |
6407213 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 147; Significance: 1e-77; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 8 - 170
Target Start/End: Original strand, 40094474 - 40094636
Alignment:
| Q |
8 |
gagcagagatatgtagcacctacattgtcacataataatagaggtggtttcgacaatggtatatgaagctcttgaagcaaattttgaagccacatgagtt |
107 |
Q |
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| T |
40094474 |
gagcagagacatgtagcacctacattgtcacataataatagaggtggtttcgacaatggtatatgaagctcttgaagcaaattttgaagccacgtgagtt |
40094573 |
T |
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| Q |
108 |
caacagatgcagtggctacaacacggtattcagcctcggttgatgatcgtgctacagtacgtt |
170 |
Q |
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| T |
40094574 |
cagcagatgcagtggctacagcacggtattcagcctcggttgatgatcgtgctacagtacgtt |
40094636 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 166 - 251
Target Start/End: Original strand, 40112935 - 40113020
Alignment:
| Q |
166 |
acgttgttttcgtgatagccaagaaataggattacctccaaaaaagataagatatgctgatgttgaggtgcggtcatccatatttc |
251 |
Q |
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| T |
40112935 |
acgttgttttcgtgatagccaagaaataggattacctccaaaaaagataagatatgctgatgttgaggtgcggtcatccatatttc |
40113020 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 167 - 249
Target Start/End: Complemental strand, 2662641 - 2662559
Alignment:
| Q |
167 |
cgttgttttcgtgatagccaagaaataggattacctccaaaaaagataagatatgctgatgttgaggtgcggtcatccatatt |
249 |
Q |
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| T |
2662641 |
cgttgtttccttgagagccaagaaataggattacctccaagatatattagatatgcagatgtggaagtacggtcatcgatatt |
2662559 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 182 - 243
Target Start/End: Original strand, 9004766 - 9004827
Alignment:
| Q |
182 |
agccaagaaataggattacctccaaaaaagataagatatgctgatgttgaggtgcggtcatc |
243 |
Q |
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| T |
9004766 |
agccaagagataggattaccaccaaaaaatataagatacgctgaagtggatgtgcgatcatc |
9004827 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 49; Significance: 4e-19; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 116 - 236
Target Start/End: Original strand, 3690402 - 3690522
Alignment:
| Q |
116 |
gcagtggctacaacacggtattcagcctcggttgatgatcgtgctacagtacgttgttttcgtgatagccaagaaataggattacctccaaaaaagataa |
215 |
Q |
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| T |
3690402 |
gcagtggcaactgcacgatattctgcctcagtggatgatcgtgccacggtacgttgtttccttgagagccatgagataggattaccaccaaaaaatataa |
3690501 |
T |
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| Q |
216 |
gatatgctgatgttgaggtgc |
236 |
Q |
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| T |
3690502 |
tatatgctgatgtggaggtgc |
3690522 |
T |
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Target: chr5 (Bit Score: 48; Significance: 2e-18; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 116 - 243
Target Start/End: Complemental strand, 32074185 - 32074058
Alignment:
| Q |
116 |
gcagtggctacaacacggtattcagcctcggttgatgatcgtgctacagtacgttgttttcgtgatagccaagaaataggattacctccaaaaaagataa |
215 |
Q |
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| T |
32074185 |
gcagtggcaactgcacgatattctgcctcaatggatgatcgtgccacggtacgttgtttccttgagagccatgagataggattaccaccaaaaaatataa |
32074086 |
T |
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| Q |
216 |
gatatgctgatgttgaggtgcggtcatc |
243 |
Q |
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| T |
32074085 |
tatatgctgatgtggaggtgcgatcatc |
32074058 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 134 - 249
Target Start/End: Complemental strand, 3019741 - 3019626
Alignment:
| Q |
134 |
tattcagcctcggttgatgatcgtgctacagtacgttgttttcgtgatagccaagaaataggattacctccaaaaaagataagatatgctgatgttgagg |
233 |
Q |
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| T |
3019741 |
tattcagcctcagtggatgacctagcaacggtgcgttgtttccttgagagccaagaaataggattacctccaaaatatattagatatgcagatgtggaag |
3019642 |
T |
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| Q |
234 |
tgcggtcatccatatt |
249 |
Q |
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| T |
3019641 |
tacggtcatcaatatt |
3019626 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 48; Significance: 2e-18; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 116 - 243
Target Start/End: Original strand, 28083395 - 28083522
Alignment:
| Q |
116 |
gcagtggctacaacacggtattcagcctcggttgatgatcgtgctacagtacgttgttttcgtgatagccaagaaataggattacctccaaaaaagataa |
215 |
Q |
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| T |
28083395 |
gcagtggcaactgcacgatattctgcctcattggatgatcgtgccacggtacgttgtttccttgagagccatgagataggattaccaccaaaaaatataa |
28083494 |
T |
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| Q |
216 |
gatatgctgatgttgaggtgcggtcatc |
243 |
Q |
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| T |
28083495 |
tatatgctgatgtggaggtgcgatcatc |
28083522 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 182 - 243
Target Start/End: Original strand, 1109102 - 1109163
Alignment:
| Q |
182 |
agccaagaaataggattacctccaaaaaagataagatatgctgatgttgaggtgcggtcatc |
243 |
Q |
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|||||||| ||||||||||| |||||||| |||||||| ||||| || || ||||| ||||| |
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| T |
1109102 |
agccaagagataggattaccaccaaaaaatataagatacgctgaagtggatgtgcgatcatc |
1109163 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 7 - 189
Target Start/End: Original strand, 653902 - 654083
Alignment:
| Q |
7 |
ggagcagagatatgtagcacctacattgtcacataataatagaggtggtttcgacaatggtatatgaagctcttg-aagcaaattttgaagccacatgag |
105 |
Q |
| |
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||||||||||||||| ||||| || |||||||||| || | |||||||| |||| ||||| | |||| || || ||| | || ||| |||||| || |
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| T |
653902 |
ggagcagagatatgttgcaccaacgttgtcacatagtagcaatggtggttttgacactggtagacgaagttcatgtaagagacttgtga-gccacactag |
654000 |
T |
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| Q |
106 |
ttcaacagatgcagtggctacaacacggtattcagcctcggttgatgatcgtgctacagtacgttgttttcgtgatagccaaga |
189 |
Q |
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|||| ||| ||||||||| || |||||||||||||||| ||||| || ||||||||||| |||||||| ||||||| |||||| |
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| T |
654001 |
ttcagcagttgcagtggccactgcacggtattcagcctcagttgaaga-cgtgctacagtgcgttgtttgcgtgataaccaaga |
654083 |
T |
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