View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2964_low_69 (Length: 250)
Name: NF2964_low_69
Description: NF2964
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2964_low_69 |
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Alignment Details
Target: chr7 (Bit Score: 225; Significance: 1e-124; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 1 - 245
Target Start/End: Complemental strand, 8074967 - 8074723
Alignment:
| Q |
1 |
catcaatggaggacctcacaatctttgagactccattatgggatttaattctacaaaatccgactcattccaagctattcaatgatgctatggaaagtga |
100 |
Q |
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| T |
8074967 |
catcaatggaggacctcacaatctttgagactccattatgggatttaattttacaaaatccgactcattccaagttattcaatgatgctatggaaagtga |
8074868 |
T |
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| Q |
101 |
ttctaatatggtgaggtttgcaatgagtgattgcaaatcagtttttgagggcttaacttctttggttgatgttggaggtggaaccggaaacactgttaaa |
200 |
Q |
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| T |
8074867 |
ttctaatatggtgaggtttgcaatgagtgattgcaaatcagtttttgagggcttaacttcgttggttgatgttggaggtggaaccggaaacactgttaaa |
8074768 |
T |
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| Q |
201 |
attatttgtgaggcgtttcctacgttaaaatgtatattcttcgac |
245 |
Q |
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| T |
8074767 |
attatttgtgaggcgtttcctacgttaaaatgtatagtgttcgac |
8074723 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 146; E-Value: 5e-77
Query Start/End: Original strand, 8 - 245
Target Start/End: Complemental strand, 8066525 - 8066288
Alignment:
| Q |
8 |
ggaggacctcacaatctttgagactccattatgggatttaattctacaaaatccgactcattccaagctattcaatgatgctatggaaagtgattctaat |
107 |
Q |
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| T |
8066525 |
ggaggatctcacaatcttcgatactacattatgggatttcatgcaacaaaattcggcttacgcggagttattcaatgatgctatggagagtgactctaat |
8066426 |
T |
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| Q |
108 |
atggtgaggtttgcaatgagtgattgcaaatcagtttttgagggcttaacttctttggttgatgttggaggtggaaccggaaacactgttaaaattattt |
207 |
Q |
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| T |
8066425 |
atgatgaggtttgcaatgagtgattgcaaatcagtttttgagggcataacttctttggttgatgttggaggtggaaccggaaacacggttaaaattattt |
8066326 |
T |
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| Q |
208 |
gtgaggcgtttcctacgttaaaatgtatattcttcgac |
245 |
Q |
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| T |
8066325 |
ctgaggcgtttcctacgttaaaatgtatagtgttcgac |
8066288 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 168 - 235
Target Start/End: Complemental strand, 4177512 - 4177445
Alignment:
| Q |
168 |
gatgttggaggtggaaccggaaacactgttaaaattatttgtgaggcgtttcctacgttaaaatgtat |
235 |
Q |
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| T |
4177512 |
gatgttggtggtggaaatggaaccactggtaaaattatttgtgagacttttcctaagttgaaatgtat |
4177445 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 52; Significance: 6e-21; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 81 - 220
Target Start/End: Complemental strand, 34951456 - 34951317
Alignment:
| Q |
81 |
aatgatgctatggaaagtgattctaatatggtgaggtttgcaatgagtgattgcaaatcagtttttgagggcttaacttctttggttgatgttggaggtg |
180 |
Q |
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| T |
34951456 |
aatgatgctatggaaagtgattctcatgttgtgaggttggctttgagagattgtaattctgtttttgaagggattggttcattggttgatgttggtggtg |
34951357 |
T |
|
| Q |
181 |
gaaccggaaacactgttaaaattatttgtgaggcgtttcc |
220 |
Q |
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| T |
34951356 |
gaactggaaacacagctaagattatttgtgaggcgtttcc |
34951317 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 81 - 220
Target Start/End: Complemental strand, 34946985 - 34946846
Alignment:
| Q |
81 |
aatgatgctatggaaagtgattctaatatggtgaggtttgcaatgagtgattgcaaatcagtttttgagggcttaacttctttggttgatgttggaggtg |
180 |
Q |
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| T |
34946985 |
aatgatgctatggaaagtgattctcatgttgtgaggttggccttgagagattgtaagtctgtttttcaagggattggttcattggttgatgttggtggtg |
34946886 |
T |
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| Q |
181 |
gaaccggaaacactgttaaaattatttgtgaggcgtttcc |
220 |
Q |
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| T |
34946885 |
gaactggaaacacagctaagattatatgtgaggcgtttcc |
34946846 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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