View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2964_low_72 (Length: 239)
Name: NF2964_low_72
Description: NF2964
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2964_low_72 |
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Alignment Details
Target: chr3 (Bit Score: 180; Significance: 2e-97; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 180; E-Value: 2e-97
Query Start/End: Original strand, 1 - 228
Target Start/End: Original strand, 36323252 - 36323474
Alignment:
| Q |
1 |
aagacatcaatccaatggtttaatttgccaaatatctgatttaagccttcaaattttgttttgagctaaatttgacaatcatacaatggtccttagcttg |
100 |
Q |
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| T |
36323252 |
aagacctcaatccaatggtttaatttgccaaatatctgatttaagccttcaaattttgttttgagctaaatttgacaataatacaatggtcctt-----g |
36323346 |
T |
|
| Q |
101 |
aatgctgaattaggggaatggattctctgaattgtaatttacacgtgagagagtaaagtgtgatctatcactattcaaatcttgcttcatctaatgttat |
200 |
Q |
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| T |
36323347 |
aatgctgaattagaggaatggattctctgaagtgtaatttacacttgagagagtaaagtgtgatctatcactattcaaatcttacttcatctaatgttat |
36323446 |
T |
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| Q |
201 |
tcccctgaattagctacttcggattcat |
228 |
Q |
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||| |||||||||||||||||||||||| |
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| T |
36323447 |
tcctctgaattagctacttcggattcat |
36323474 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 7 - 94
Target Start/End: Original strand, 36303259 - 36303344
Alignment:
| Q |
7 |
tcaatccaatggtttaatttgccaaatatctgatttaagccttcaaattttgttttgagctaaatttgacaatcatacaatggtcctt |
94 |
Q |
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| T |
36303259 |
tcaatctaatggtttaatttgccaaatatgtgatttaagccatctaattttg--ttgagctaaattttaccatcatacaatggtcctt |
36303344 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 114 - 166
Target Start/End: Complemental strand, 3229156 - 3229104
Alignment:
| Q |
114 |
gggaatggattctctgaattgtaatttacacgtgagagagtaaagtgtgatct |
166 |
Q |
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| T |
3229156 |
gggaatggatcctctcatgtgtaatttacacatgagagaataaagtgtgatct |
3229104 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 116 - 180
Target Start/End: Original strand, 49655309 - 49655373
Alignment:
| Q |
116 |
gaatggattctctgaattgtaatttacacgtgagagagtaaagtgtgatctatcactattcaaat |
180 |
Q |
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| T |
49655309 |
gaatggattctcacagatgtaatttacacataagagagtaaagtgtcatctctcaccattcaaat |
49655373 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 133 - 177
Target Start/End: Original strand, 38656220 - 38656264
Alignment:
| Q |
133 |
tgtaatttacacgtgagagagtaaagtgtgatctatcactattca |
177 |
Q |
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| T |
38656220 |
tgtaatttacacgtgagagagtaaagtctgattcatcacaattca |
38656264 |
T |
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