View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2964_low_73 (Length: 239)

Name: NF2964_low_73
Description: NF2964
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2964_low_73
NF2964_low_73
[»] chr7 (6 HSPs)
chr7 (22-188)||(2335929-2336095)
chr7 (20-188)||(2319563-2319732)
chr7 (42-181)||(1087053-1087195)
chr7 (37-181)||(1594547-1594694)
chr7 (17-108)||(3957057-3957148)
chr7 (36-108)||(2327802-2327874)
[»] scaffold0491 (2 HSPs)
scaffold0491 (42-188)||(7777-7923)
scaffold0491 (37-109)||(3232-3304)
[»] chr8 (4 HSPs)
chr8 (37-188)||(18751401-18751555)
chr8 (37-109)||(18741426-18741498)
chr8 (37-109)||(18746390-18746462)
chr8 (37-109)||(18755597-18755669)


Alignment Details
Target: chr7 (Bit Score: 151; Significance: 5e-80; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 151; E-Value: 5e-80
Query Start/End: Original strand, 22 - 188
Target Start/End: Original strand, 2335929 - 2336095
Alignment:
Q  22 aattcattagatctcaaaaaatgaacttgacaaaatatttagtttccaattcctatggtccaaaaatgaggatggtctttcttcttatctggattttcat 121  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2335929 aattcattagatctcaaaaaatgaacttaacaaaatatttagtttccaattcctatggtccaaaaatgaggatggtctttcttcttatctggattttcat 2336028  T
Q  122 tgtaggtacttaatctgccacaatgaaatctcaacttcaaatgaacgcaaatgctataatgaatagt 188  Q
    |||||||||| |||||||||||||||||||||||||||||||| | |||||||||||||||||||||    
T  2336029 tgtaggtactcaatctgccacaatgaaatctcaacttcaaatggaagcaaatgctataatgaatagt 2336095  T

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Target: chr7; HSP #2
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 20 - 188
Target Start/End: Original strand, 2319563 - 2319732
Alignment:
Q  20 gcaattcattagatctcaaaa-aatgaacttgacaaaatatttagtttccaattcctatggtccaaaaatgaggatggtctttcttcttatctggatttt 118  Q
    |||||||||||||||| |||| ||||||||||| |||||| ||||||||||||| ||||||||  |||||| ||||||||||||||||||| |||  |||    
T  2319563 gcaattcattagatctaaaaaaaatgaacttgataaaatacttagtttccaatttctatggtcagaaaatgtggatggtctttcttcttatttggccttt 2319662  T
Q  119 cattgtaggtacttaatctgccacaatgaaatctcaacttcaaatgaacgcaaatgctataatgaatagt 188  Q
    |||||| |||||| |||||||| || ||| |||||||| ||| ||| | |||||||| ||| | ||||||    
T  2319663 cattgtgggtactcaatctgcctcagtgacatctcaacctcatatggaagcaaatgcgatattaaatagt 2319732  T

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Target: chr7; HSP #3
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 42 - 181
Target Start/End: Original strand, 1087053 - 1087195
Alignment:
Q  42 atgaacttgacaaaatatttagtttccaattcctatggtccaaaaatgaggatggtctttcttcttatctggattttcattgtaggtacttaat---ctg 138  Q
    |||||||  ||||||||||||||||| |||| || || |||||||||| |||| | ||||||| |||| || | ||| ||||| || ||| |||   |||    
T  1087053 atgaactacacaaaatatttagtttcaaatttctttgatccaaaaatgtggattgcctttcttattatttgcagtttgattgtgggaactcaatctgctg 1087152  T
Q  139 ccacaatgaaatctcaacttcaaatgaacgcaaatgctataat 181  Q
    |||| |||| |||||||||||||||| | ||||||||||||||    
T  1087153 ccactatgacatctcaacttcaaatggaagcaaatgctataat 1087195  T

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Target: chr7; HSP #4
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 37 - 181
Target Start/End: Original strand, 1594547 - 1594694
Alignment:
Q  37 aaaaaatgaacttgacaaaatatttagtttccaattcctatggtccaaaaatgaggatggtctttcttcttatctggattttcattgtaggtacttaatc 136  Q
    |||| |||||||||| |||||||||| |||| ||||||| |||||||||||||| ||| | |||||||||||| || | | | | ||| || ||| ||||    
T  1594547 aaaatatgaacttgagaaaatatttaatttcaaattcctttggtccaaaaatgatgattgcctttcttcttatttgcagtctgactgtgggaactcaatc 1594646  T
Q  137 tgccacaatgaaatctc---aacttcaaatgaacgcaaatgctataat 181  Q
    ||||| || || |||||   ||||||||||| | |||||||| |||||    
T  1594647 tgccaaaacgacatctcataaacttcaaatggaagcaaatgcaataat 1594694  T

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Target: chr7; HSP #5
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 17 - 108
Target Start/End: Complemental strand, 3957148 - 3957057
Alignment:
Q  17 catgcaattcattagatctcaaaaaatgaacttgacaaaatatttagtttccaattcctatggtccaaaaatgaggatggtctttcttctta 108  Q
    |||||||||||||  ||||||||||||||||||||||||||||||   ||| |||  |||| ||||||||||| ||| | | ||||||||||    
T  3957148 catgcaattcattcaatctcaaaaaatgaacttgacaaaatatttttgttctaatatctatagtccaaaaatgtggaagatttttcttctta 3957057  T

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Target: chr7; HSP #6
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 36 - 108
Target Start/End: Original strand, 2327802 - 2327874
Alignment:
Q  36 caaaaaatgaacttgacaaaatatttagtttccaattcctatggtccaaaaatgaggatggtctttcttctta 108  Q
    ||||||||||||||||||||||||||| || | |||| | ||  |||||||||| || |||||||||||||||    
T  2327802 caaaaaatgaacttgacaaaatatttatttcctaatttcaatattccaaaaatgtgggtggtctttcttctta 2327874  T

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Target: scaffold0491 (Bit Score: 59; Significance: 4e-25; HSPs: 2)
Name: scaffold0491
Description:

Target: scaffold0491; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 42 - 188
Target Start/End: Complemental strand, 7923 - 7777
Alignment:
Q  42 atgaacttgacaaaatatttagtttccaattcctatggtccaaaaatgaggatggtctttcttcttatctggattttcattgtaggtacttaatctgcca 141  Q
    |||| ||||| |||||||||| |||| |||| || ||||||||||||| ||||||||||||||||||| ||   |||  |||  || ||| |||||||||    
T  7923 atgagcttgaaaaaatatttaatttcaaatttctttggtccaaaaatgtggatggtctttcttcttatttgcggtttggttgagggaactcaatctgcca 7824  T
Q  142 caatgaaatctcaacttcaaatgaacgcaaatgctataatgaatagt 188  Q
    |||||| |||||||||||||||| | |||||||||||| | ||||||    
T  7823 caatgacatctcaacttcaaatggaagcaaatgctatattaaatagt 7777  T

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Target: scaffold0491; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 37 - 109
Target Start/End: Complemental strand, 3304 - 3232
Alignment:
Q  37 aaaaaatgaacttgacaaaatatttagtttccaattcctatggtccaaaaatgaggatggtctttcttcttat 109  Q
    |||| |||||||||| ||||||||||||||| |||| || ||||||||||||| |||||||||||||||||||    
T  3304 aaaatatgaacttgataaaatatttagtttcaaatttctttggtccaaaaatgtggatggtctttcttcttat 3232  T

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Target: chr8 (Bit Score: 57; Significance: 6e-24; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 37 - 188
Target Start/End: Complemental strand, 18751555 - 18751401
Alignment:
Q  37 aaaaaatgaacttgacaaaatatttagtttccaattcctatggtccaaaaatgaggatggtctttcttcttatctggattttcattgtaggtacttaatc 136  Q
    |||| |||||||||| ||||||||||||||| |||| || ||||||||||||| ||||||||||||||||||| ||   |||  |||  || ||| ||||    
T  18751555 aaaatatgaacttgataaaatatttagtttcaaatttctttggtccaaaaatgtggatggtctttcttcttatttgcggtttggttgagggaactcaatc 18751456  T
Q  137 tgccacaatgaaatc---tcaacttcaaatgaacgcaaatgctataatgaatagt 188  Q
    ||||||||||| |||   ||||||||||||| | |||||||||||| | ||||||    
T  18751455 tgccacaatgacatctcatcaacttcaaatggaagcaaatgctatattaaatagt 18751401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 37 - 109
Target Start/End: Complemental strand, 18741498 - 18741426
Alignment:
Q  37 aaaaaatgaacttgacaaaatatttagtttccaattcctatggtccaaaaatgaggatggtctttcttcttat 109  Q
    |||| |||||||||| ||||||||||||||| |||| || ||||||||||||| |||||||||||||||||||    
T  18741498 aaaatatgaacttgataaaatatttagtttcaaatttctttggtccaaaaatgtggatggtctttcttcttat 18741426  T

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Target: chr8; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 37 - 109
Target Start/End: Complemental strand, 18746462 - 18746390
Alignment:
Q  37 aaaaaatgaacttgacaaaatatttagtttccaattcctatggtccaaaaatgaggatggtctttcttcttat 109  Q
    |||| |||||||||| ||||||||||||||| |||| || ||||||||||||| |||||||||||||||||||    
T  18746462 aaaatatgaacttgataaaatatttagtttcaaatttctttggtccaaaaatgtggatggtctttcttcttat 18746390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 37 - 109
Target Start/End: Complemental strand, 18755669 - 18755597
Alignment:
Q  37 aaaaaatgaacttgacaaaatatttagtttccaattcctatggtccaaaaatgaggatggtctttcttcttat 109  Q
    |||||| |||||||||||||||||||||||| |||| |  ||||||||| ||| |||  | ||||||||||||    
T  18755669 aaaaaaagaacttgacaaaatatttagtttcaaatttcattggtccaaatatgtggaatgcctttcttcttat 18755597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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