View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2964_low_78 (Length: 220)
Name: NF2964_low_78
Description: NF2964
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2964_low_78 |
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Alignment Details
Target: chr3 (Bit Score: 203; Significance: 1e-111; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 1 - 211
Target Start/End: Original strand, 51035915 - 51036125
Alignment:
| Q |
1 |
atcaaagaatcatgtaagtgatgagtcacaacaaatcttgtaactgacatattcctctcaagtgccaacttctcttaaccaacctccaagggatattcca |
100 |
Q |
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| T |
51035915 |
atcaaagaatcatgtaagtgatgagtcacaacaaatcttgtaactgacatattcctctcaagtgtcaacttctcttaaccaacctccaagggatattcca |
51036014 |
T |
|
| Q |
101 |
gtaattcctatcctagagtagaggggtctgcatcttctctctgtgttagataatctgccaatttaatcaagtcccatacctgccaggtcaaggaataata |
200 |
Q |
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| T |
51036015 |
gtaattcctatcctagagtagaggggtctgcatcttctctctgtgttagataatctgccaatttaatcaagtcccatacctgccaggtcaaggaataata |
51036114 |
T |
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| Q |
201 |
cacaggttctg |
211 |
Q |
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||||| ||||| |
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| T |
51036115 |
cacagtttctg |
51036125 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 87; E-Value: 7e-42
Query Start/End: Original strand, 66 - 200
Target Start/End: Original strand, 51043901 - 51044030
Alignment:
| Q |
66 |
caacttctcttaaccaacctccaagggatattccagtaattcctatcctagagtagaggggtctgcatcttctctctgtgttagataatctgccaattta |
165 |
Q |
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|||||||||| |||||||||||||| |||||||||||||||||||||||||| ||||||| ||||||||||| |||||||||||||||||||||| |
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| T |
51043901 |
caacttctctcaaccaacctccaagtgatattccagtaattcctatcctaga-----ggggtctatatcttctctctctgttagataatctgccaattta |
51043995 |
T |
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| Q |
166 |
atcaagtcccatacctgccaggtcaaggaataata |
200 |
Q |
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||||||||||||||||||||| |||||||| |||| |
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| T |
51043996 |
atcaagtcccatacctgccagatcaaggaacaata |
51044030 |
T |
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