View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2964_low_9 (Length: 649)
Name: NF2964_low_9
Description: NF2964
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2964_low_9 |
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Alignment Details
Target: chr2 (Bit Score: 580; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 580; E-Value: 0
Query Start/End: Original strand, 3 - 638
Target Start/End: Original strand, 39296392 - 39297027
Alignment:
| Q |
3 |
ccggttggttagctcttatccttctatggttattcattcttcttactataagttacgagcctcgttcaaaaacctatcacataaccatttcaaagatgat |
102 |
Q |
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| T |
39296392 |
ccggttggttagctcttatccttctatggtttttcattcttttaacagtaagttgtgagcctagttcaaaaacctatcacataaccatttcaaagatgat |
39296491 |
T |
|
| Q |
103 |
taagaaacaagaatgttggttcactttagctatcacaattctcattatgattccttggttaagtattaaaaaagttcaagttagtgtcacagcaccatca |
202 |
Q |
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|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
39296492 |
taagaaacaagagtgttggttcactttagctatcacaattctcattatgattccttggttaagtattaaaaaagtacaagttagtgtcacagcaccatca |
39296591 |
T |
|
| Q |
203 |
aatcatgcttcaattattaaatttgaaggtggtgttaaagcaggtttattaggtagaattagtccttcaccattagcagaatggcatgcatttggaatca |
302 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||| |||||||||||||||||||||||| |
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| T |
39296592 |
aatcatgcttcaattattaaatttgaaggtggtgttaaagcaggtttattaggtagaataagtccatcaccattatcagaatggcatgcatttggaatca |
39296691 |
T |
|
| Q |
303 |
tatcagatggaaaaaaggatcacatgatgctagctggtgcagttggtgattttacaaaatcattagtttcttcacctcctaaacatctttggattcgttc |
402 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39296692 |
tatcagatggaaaaaaggatcacatgatgctagctggtgcagttggtgattttacaaaatcattagtttcttcacctcctaaacatctttggattcgttc |
39296791 |
T |
|
| Q |
403 |
agttcattttgctggattaccttatctagtgaatttgtatcaaaaagtgcttttagtagcaacaggttctggaatttgtgtgttcctatcatatctcttg |
502 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39296792 |
agttcattttgctggattaccttatctagtgaatttgtatcaaaaagtgcttttagtagcaacaggttctggaatttgtgtgttcctatcatatctcttg |
39296891 |
T |
|
| Q |
503 |
cagaaaagtaaggctgatgtgtatttgatttgggtggctaaagatattgaactgaactttggaaatgagataaaggaaatggtagagaaatatcccaagg |
602 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39296892 |
cagaaaagtaaggctgatgtgtatttgatttgggtggctaaagatattgaactgaactttggaaatgagataaaggaaatggtagagaaatatcccaagg |
39296991 |
T |
|
| Q |
603 |
acaaaattattgttcatgatactgttgtctctggtc |
638 |
Q |
| |
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|||||||||||||||||||||||||||| ||||||| |
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| T |
39296992 |
acaaaattattgttcatgatactgttgtttctggtc |
39297027 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 534; E-Value: 0
Query Start/End: Original strand, 1 - 638
Target Start/End: Original strand, 39289510 - 39290147
Alignment:
| Q |
1 |
ttccggttggttagctcttatccttctatggttattcattcttcttactataagttacgagcctcgttcaaaaacctatcacataaccatttcaaagatg |
100 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||| ||||||||||||||||| ||||||||| ||||||| |
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| T |
39289510 |
ttccggttggttagctcttatccttctatggttattcattcttcttactataagttatgaacctagttcaaaaacctatcacttaaccattttaaagatg |
39289609 |
T |
|
| Q |
101 |
attaagaaacaagaatgttggttcactttagctatcacaattctcattatgattccttggttaagtattaaaaaagttcaagttagtgtcacagcaccat |
200 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
39289610 |
gttaagaaacaagaatgttggttcactttagctatcacaattctcattatgattccttggttaagtattaaaaaagtacaagttagtgtcacagcaccat |
39289709 |
T |
|
| Q |
201 |
caaatcatgcttcaattattaaatttgaaggtggtgttaaagcaggtttattaggtagaattagtccttcaccattagcagaatggcatgcatttggaat |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||| |||||||||||||||||||||| |
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| T |
39289710 |
caaatcatgcttcaattattaaatttgaaggtggtgttaaagcaggtttattaggtagaataagtccatcaccattatcagaatggcatgcatttggaat |
39289809 |
T |
|
| Q |
301 |
catatcagatggaaaaaaggatcacatgatgctagctggtgcagttggtgattttacaaaatcattagtttcttcacctcctaaacatctttggattcgt |
400 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39289810 |
catatcagatggaaaaaaggatcacatgatgctagctggtgcagttggtgattttacaaaatcattagtttcttcacctcctaaacatctttggattcgt |
39289909 |
T |
|
| Q |
401 |
tcagttcattttgctggattaccttatctagtgaatttgtatcaaaaagtgcttttagtagcaacaggttctggaatttgtgtgttcctatcatatctct |
500 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||| ||| | |
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| T |
39289910 |
tcagttcattttgctggattaccttatctagtgaatttgtatcaaaaagtgcttttagtagcaacaggttctgggatttgtgtgttcttatcatttctgt |
39290009 |
T |
|
| Q |
501 |
tgcagaaaagtaaggctgatgtgtatttgatttgggtggctaaagatattgaactgaactttggaaatgagataaaggaaatggtagagaaatatcccaa |
600 |
Q |
| |
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||||||||| |||||||||||||| ||||||||||||||||||||||||||| ||||||||||||| |||||||||||| |||| ||||||||| || | |
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| T |
39290010 |
tgcagaaaaataaggctgatgtgtgcttgatttgggtggctaaagatattgaaatgaactttggaaaagagataaaggaattggtggagaaatattccga |
39290109 |
T |
|
| Q |
601 |
ggacaaaattattgttcatgatactgttgtctctggtc |
638 |
Q |
| |
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||||||||| |||||||||||||||| ||| ||||||| |
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|
| T |
39290110 |
ggacaaaatcattgttcatgatactgctgtttctggtc |
39290147 |
T |
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