View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2965_high_1 (Length: 450)

Name: NF2965_high_1
Description: NF2965
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2965_high_1
NF2965_high_1
[»] chr5 (2 HSPs)
chr5 (8-132)||(38963037-38963161)
chr5 (178-287)||(35605418-35605527)
[»] chr7 (7 HSPs)
chr7 (178-298)||(9454806-9454926)
chr7 (178-298)||(32197744-32197864)
chr7 (178-298)||(39619629-39619749)
chr7 (178-298)||(41693749-41693869)
chr7 (352-384)||(9454725-9454757)
chr7 (104-132)||(23817009-23817037)
chr7 (178-298)||(31489772-31489892)
[»] chr3 (9 HSPs)
chr3 (178-298)||(43641246-43641366)
chr3 (197-298)||(50563646-50563747)
chr3 (178-298)||(52402959-52403079)
chr3 (184-258)||(20585400-20585474)
chr3 (178-268)||(50563024-50563114)
chr3 (178-251)||(42447670-42447743)
chr3 (178-251)||(46104440-46104513)
chr3 (352-384)||(43641404-43641436)
chr3 (352-384)||(50563562-50563594)
[»] chr8 (5 HSPs)
chr8 (178-298)||(45517797-45517917)
chr8 (29-102)||(19946277-19946352)
chr8 (178-258)||(22534598-22534678)
chr8 (187-295)||(10718285-10718393)
chr8 (178-219)||(4183894-4183935)
[»] chr6 (3 HSPs)
chr6 (178-298)||(17516265-17516385)
chr6 (178-219)||(17000192-17000233)
chr6 (178-219)||(16995555-16995596)
[»] chr1 (9 HSPs)
chr1 (178-298)||(24610022-24610142)
chr1 (178-298)||(24422618-24422738)
chr1 (237-298)||(35911724-35911785)
chr1 (260-298)||(34934583-34934621)
chr1 (178-295)||(27263011-27263128)
chr1 (178-251)||(30722219-30722292)
chr1 (178-298)||(24427205-24427325)
chr1 (178-298)||(35721201-35721321)
chr1 (178-215)||(46074972-46075009)
[»] chr2 (3 HSPs)
chr2 (29-102)||(12820892-12820967)
chr2 (178-295)||(1777572-1777689)
chr2 (178-219)||(25977973-25978014)
[»] chr4 (2 HSPs)
chr4 (178-242)||(3880389-3880453)
chr4 (46-102)||(10078252-10078308)
[»] scaffold0009 (1 HSPs)
scaffold0009 (178-216)||(202682-202720)


Alignment Details
Target: chr5 (Bit Score: 121; Significance: 8e-62; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 121; E-Value: 8e-62
Query Start/End: Original strand, 8 - 132
Target Start/End: Complemental strand, 38963161 - 38963037
Alignment:
Q  8 tagcataggtgctgtagaaataatagtggcagttacatatagggaaatataattatttagaggatatattatttgctttatatgatatgaaacataaaag 107  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38963161 tagcataggtgatgtagaaataatagtggcagttacatatagggaaatataattatttagaggatatattatttgctttatatgatatgaaacataaaag 38963062  T
Q  108 gctaaaatatggttttagtctctgt 132  Q
    |||||||||||||||||||||||||    
T  38963061 gctaaaatatggttttagtctctgt 38963037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 178 - 287
Target Start/End: Complemental strand, 35605527 - 35605418
Alignment:
Q  178 aaaatagtccctggacccattttcttgctgatttggcacattctcgcatatgtggtatgtgctgactgtgtaaacttgtatgtgtggcatccaagtggca 277  Q
    ||||||||| ||| ||||| ||||||||||||||||  |||| |||| ||| ||| | ||||||| ||| ||||||||||   |||||||||| || |||    
T  35605527 aaaatagtctctgaacccactttcttgctgatttggtgcattttcgcttatatggcaggtgctgaatgtctaaacttgtacacgtggcatccaggttgca 35605428  T
Q  278 attattttat 287  Q
    |||| |||||    
T  35605427 attaatttat 35605418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 81; Significance: 6e-38; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 178 - 298
Target Start/End: Complemental strand, 9454926 - 9454806
Alignment:
Q  178 aaaatagtccctggacccattttcttgctgatttggcacattctcgcatatgtggtatgtgctgactgtgtaaacttgtatgtgtggcatccaagtggca 277  Q
    ||||||||||||| ||||| |||||||||||||||||||||| |  |  ||||| || ||||||||||||||||||||||| ||||||||||||||||||    
T  9454926 aaaatagtccctgaacccactttcttgctgatttggcacattttttctcatgtgataggtgctgactgtgtaaacttgtatatgtggcatccaagtggca 9454827  T
Q  278 attattttattttaactaatt 298  Q
    |||||||||||||||||||||    
T  9454826 attattttattttaactaatt 9454806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 178 - 298
Target Start/End: Complemental strand, 32197864 - 32197744
Alignment:
Q  178 aaaatagtccctggacccattttcttgctgatttggcacattctcgcatatgtggtatgtgctgactgtgtaaacttgtatgtgtggcatccaagtggca 277  Q
    |||||||||||||| |||||||| | | ||||||| ||||||   |||||  ||| |  ||||||| ||| |||| ||||  ||||||||||| ||| ||    
T  32197864 aaaatagtccctggtcccattttttcgatgatttgtcacatttatgcatacttggcagatgctgacggtgcaaacatgtacatgtggcatccaggtgaca 32197765  T
Q  278 attattttattttaactaatt 298  Q
    |||||||||||||||||||||    
T  32197764 attattttattttaactaatt 32197744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 178 - 298
Target Start/End: Complemental strand, 39619749 - 39619629
Alignment:
Q  178 aaaatagtccctggacccattttcttgctgatttggcacattctcgcatatgtggtatgtgctgactgtgtaaacttgtatgtgtggcatccaagtggca 277  Q
    |||||||||| ||||| || ||||||  ||||||| ||||||   |||||||||| ||  ||||||| || |||||||||  |||| |||||| |||| |    
T  39619749 aaaatagtccttggactcactttcttaatgatttgtcacatttgtgcatatgtggcattagctgactatgcaaacttgtacatgtgtcatccatgtggta 39619650  T
Q  278 attattttattttaactaatt 298  Q
    ||||||||||||||| |||||    
T  39619649 attattttattttaaataatt 39619629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 178 - 298
Target Start/End: Original strand, 41693749 - 41693869
Alignment:
Q  178 aaaatagtccctggacccattttcttgctgatttggcacattctcgcatatgtggtatgtgctgactgtgtaaacttgtatgtgtggcatccaagtggca 277  Q
    |||||||||||||  || | ||| ||| ||||||| ||||||   |||||||||| ||  |||||| ||  |||||||||  |||| |||||| ||||||    
T  41693749 aaaatagtccctgaccctacttttttgatgatttgtcacatttgtgcatatgtggcattagctgacggtacaaacttgtacatgtgacatccacgtggca 41693848  T
Q  278 attattttattttaactaatt 298  Q
    ||||||||||||||| |||||    
T  41693849 attattttattttaaataatt 41693869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 352 - 384
Target Start/End: Complemental strand, 9454757 - 9454725
Alignment:
Q  352 catttaattttaatttattaaaaacaacaaatc 384  Q
    |||||| ||||||||||||||||||||||||||    
T  9454757 catttatttttaatttattaaaaacaacaaatc 9454725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 104 - 132
Target Start/End: Complemental strand, 23817037 - 23817009
Alignment:
Q  104 aaaggctaaaatatggttttagtctctgt 132  Q
    |||||||||||||||||||||||||||||    
T  23817037 aaaggctaaaatatggttttagtctctgt 23817009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 178 - 298
Target Start/End: Complemental strand, 31489892 - 31489772
Alignment:
Q  178 aaaatagtccctggacccattttcttgctgatttggcacattctcgcatatgtggtatgtgctgactgtgtaaacttgtatgtgtggcatccaagtggca 277  Q
    |||||||||||   ||||| ||||||||||||||| | |||| | || ||||||| || |||| ||| || |||| ||||  ||||||||    ||||||    
T  31489892 aaaatagtccccaaacccactttcttgctgatttgtctcatttttgcctatgtggcatatgctaactctgcaaacctgtacatgtggcattagggtggca 31489793  T
Q  278 attattttattttaactaatt 298  Q
    ||||||| |||||| ||||||    
T  31489792 attatttaattttacctaatt 31489772  T

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Target: chr3 (Bit Score: 77; Significance: 1e-35; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 178 - 298
Target Start/End: Original strand, 43641246 - 43641366
Alignment:
Q  178 aaaatagtccctggacccattttcttgctgatttggcacattctcgcatatgtggtatgtgctgactgtgtaaacttgtatgtgtggcatccaagtggca 277  Q
    |||||||||||||  | || ||||||| |||||||||||||| || |  |||||||| ||||||||||||||||||||||| ||||||||||||||||||    
T  43641246 aaaatagtccctgatctcactttcttgttgatttggcacattttctctcatgtggtaggtgctgactgtgtaaacttgtatatgtggcatccaagtggca 43641345  T
Q  278 attattttattttaactaatt 298  Q
    |||||||||||||||||||||    
T  43641346 attattttattttaactaatt 43641366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 197 - 298
Target Start/End: Complemental strand, 50563747 - 50563646
Alignment:
Q  197 ttttcttgctgatttggcacattctcgcatatgtggtatgtgctgactgtgtaaacttgtatgtgtggcatccaagtggcaattattttattttaactaa 296  Q
    ||||||||||||||||||||||| || |  |||||||| ||||||||||||||||||||||  |||||||| ||||||||||||||||||||||||||||    
T  50563747 ttttcttgctgatttggcacattttctctcatgtggtaggtgctgactgtgtaaacttgtacatgtggcatacaagtggcaattattttattttaactaa 50563648  T
Q  297 tt 298  Q
    ||    
T  50563647 tt 50563646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 178 - 298
Target Start/End: Complemental strand, 52403079 - 52402959
Alignment:
Q  178 aaaatagtccctggacccattttcttgctgatttggcacattctcgcatatgtggtatgtgctgactgtgtaaacttgtatgtgtggcatccaagtggca 277  Q
    |||||||||| |||||||| ||||||| ||||||| ||||||   |||||||||| ||  ||||||| || |||||||||  |||| |||||| |||| |    
T  52403079 aaaatagtccttggacccactttcttgatgatttgtcacatttgtgcatatgtggcattagctgactatgcaaacttgtacatgtgtcatccatgtggta 52402980  T
Q  278 attattttattttaactaatt 298  Q
    ||||||||||||||| |||||    
T  52402979 attattttattttaaataatt 52402959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 184 - 258
Target Start/End: Complemental strand, 20585474 - 20585400
Alignment:
Q  184 gtccctggacccattttcttgctgatttggcacattctcgcatatgtggtatgtgctgactgtgtaaacttgtat 258  Q
    ||||||| ||||| ||||||||||||||| | |||| | || ||||||| |||||||||||||  ||||||||||    
T  20585474 gtccctgaacccactttcttgctgatttgactcatttttgcttatgtggcatgtgctgactgtacaaacttgtat 20585400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 178 - 268
Target Start/End: Original strand, 50563024 - 50563114
Alignment:
Q  178 aaaatagtccctggacccattttcttgctgatttggcacattctcgcatatgtggtatgtgctgactgtgtaaacttgtatgtgtggcatc 268  Q
    ||||||||| || | |||| ||||||| |||||||||||||| | || ||||| | |||| || | |||||||||||||||  ||||||||    
T  50563024 aaaatagtctctagtcccactttcttgttgatttggcacatttttgcttatgtagcatgtcctaattgtgtaaacttgtatacgtggcatc 50563114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 178 - 251
Target Start/End: Complemental strand, 42447743 - 42447670
Alignment:
Q  178 aaaatagtccctggacccattttcttgctgatttggcacattctcgcatatgtggtatgtgctgactgtgtaaa 251  Q
    |||||||||| |||||||| ||||||||||||||| | |||| | || ||||||  |  |||||||||||||||    
T  42447743 aaaatagtccttggacccactttcttgctgatttgtcccatttttgcctatgtgacagatgctgactgtgtaaa 42447670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 178 - 251
Target Start/End: Original strand, 46104440 - 46104513
Alignment:
Q  178 aaaatagtccctggacccattttcttgctgatttggcacattctcgcatatgtggtatgtgctgactgtgtaaa 251  Q
    |||||||||||| | |||| |||  || ||||||||| |||| |||||||||||| |  |||||||||||||||    
T  46104440 aaaatagtccctaggcccactttactgatgatttggcgcattttcgcatatgtggcagatgctgactgtgtaaa 46104513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 352 - 384
Target Start/End: Original strand, 43641404 - 43641436
Alignment:
Q  352 catttaattttaatttattaaaaacaacaaatc 384  Q
    |||||| ||||||||||||||||||||||||||    
T  43641404 catttatttttaatttattaaaaacaacaaatc 43641436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 352 - 384
Target Start/End: Complemental strand, 50563594 - 50563562
Alignment:
Q  352 catttaattttaatttattaaaaacaacaaatc 384  Q
    |||||| ||||||||||||||||||||||||||    
T  50563594 catttatttttaatttattaaaaacaacaaatc 50563562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 73; Significance: 3e-33; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 178 - 298
Target Start/End: Complemental strand, 45517917 - 45517797
Alignment:
Q  178 aaaatagtccctggacccattttcttgctgatttggcacattctcgcatatgtggtatgtgctgactgtgtaaacttgtatgtgtggcatccaagtggca 277  Q
    |||||||||  ||| |||| ||||||||| ||||||| |||| |||| ||||||||| ||||||||||||||||||||||| ||||||||||| |||| |    
T  45517917 aaaatagtctatgggcccaatttcttgctaatttggcgcattttcgcttatgtggtaggtgctgactgtgtaaacttgtatatgtggcatccaggtggaa 45517818  T
Q  278 attattttattttaactaatt 298  Q
    |||||||||||||||||||||    
T  45517817 attattttattttaactaatt 45517797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 29 - 102
Target Start/End: Original strand, 19946277 - 19946352
Alignment:
Q  29 aatagtggcagttacata--tagggaaatataattatttagaggatatattatttgctttatatgatatgaaacat 102  Q
    ||||||||||||||||||  |||||| ||||| |||||||| ||||||| ||||| ||| ||||||||||||||||    
T  19946277 aatagtggcagttacataaatagggagatatagttatttaggggatatactattttcttcatatgatatgaaacat 19946352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 178 - 258
Target Start/End: Complemental strand, 22534678 - 22534598
Alignment:
Q  178 aaaatagtccctggacccattttcttgctgatttggcacattctcgcatatgtggtatgtgctgactgtgtaaacttgtat 258  Q
    |||| ||||| |||||||| ||||||||||||||||| |||| | || ||||||| | |||||||||||  ||||||||||    
T  22534678 aaaaaagtccttggacccactttcttgctgatttggctcatttttgcttatgtggcaagtgctgactgtacaaacttgtat 22534598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 187 - 295
Target Start/End: Complemental strand, 10718393 - 10718285
Alignment:
Q  187 cctggacccattttcttgctgatttggcacattctcgcatatgtggtatgtgctgactgtgtaaacttgtatgtgtggcatccaagtggcaattatttta 286  Q
    |||| ||||| |||| |||||||||||||| ||   ||| | || | || || ||||||||||||| |||||  |||||||| ||||| |||||||||||    
T  10718393 cctgaacccactttcatgctgatttggcacctttaggcagacgtagcatatgttgactgtgtaaacatgtatacgtggcatctaagtgacaattatttta 10718294  T
Q  287 ttttaacta 295  Q
    |||| ||||    
T  10718293 tttttacta 10718285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 178 - 219
Target Start/End: Complemental strand, 4183935 - 4183894
Alignment:
Q  178 aaaatagtccctggacccattttcttgctgatttggcacatt 219  Q
    |||| |||||||||||||| ||||||||| ||||||||||||    
T  4183935 aaaaaagtccctggacccactttcttgctaatttggcacatt 4183894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 45; Significance: 2e-16; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 178 - 298
Target Start/End: Original strand, 17516265 - 17516385
Alignment:
Q  178 aaaatagtccctggacccattttcttgctgatttggcacattctcgcatatgtggtatgtgctgactgtgtaaacttgtatgtgtggcatccaagtggca 277  Q
    |||||||||| |||||||| ||||||| ||||||| ||||||   |||||||||| ||   |||||| || |||||||||  |||| |||||| |||| |    
T  17516265 aaaatagtccttggacccactttcttgatgatttgtcacatttgtgcatatgtggcattaactgactatgcaaacttgtacatgtgtcatccatgtggta 17516364  T
Q  278 attattttattttaactaatt 298  Q
    ||||||||||||||| |||||    
T  17516365 attattttattttaaataatt 17516385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 178 - 219
Target Start/End: Complemental strand, 17000233 - 17000192
Alignment:
Q  178 aaaatagtccctggacccattttcttgctgatttggcacatt 219  Q
    |||| |||||||||||||| ||||||||||||||||||||||    
T  17000233 aaaaaagtccctggacccactttcttgctgatttggcacatt 17000192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 178 - 219
Target Start/End: Original strand, 16995555 - 16995596
Alignment:
Q  178 aaaatagtccctggacccattttcttgctgatttggcacatt 219  Q
    |||| ||||| ||| |||||||||||||||||||||||||||    
T  16995555 aaaaaagtccttggccccattttcttgctgatttggcacatt 16995596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 45; Significance: 2e-16; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 178 - 298
Target Start/End: Original strand, 24610022 - 24610142
Alignment:
Q  178 aaaatagtccctggacccattttcttgctgatttggcacattctcgcatatgtggtatgtgctgactgtgtaaacttgtatgtgtggcatccaagtggca 277  Q
    |||||||||||| | |||| ||| ||| ||||||| ||||||   |||||||||| ||| ||||| |||  |||||||||  ||||||||||| ||||||    
T  24610022 aaaatagtccctcgccccacttttttggtgatttgtcacatttgtgcatatgtggcatgagctgattgtacaaacttgtacatgtggcatccatgtggca 24610121  T
Q  278 attattttattttaactaatt 298  Q
    ||||| ||||||||| |||||    
T  24610122 attatattattttaaataatt 24610142  T

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Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 178 - 298
Target Start/End: Original strand, 24422618 - 24422738
Alignment:
Q  178 aaaatagtccctggacccattttcttgctgatttggcacattctcgcatatgtggtatgtgctgactgtgtaaacttgtatgtgtggcatccaagtggca 277  Q
    |||||||||| | |||||| ||||||||| ||||| | ||||   || ||||||| || |||||||| || |||| ||||  ||||||||||| ||||||    
T  24422618 aaaatagtccttagacccactttcttgctaatttgtctcatttctgcctatgtggcatatgctgactatgcaaacatgtacatgtggcatccaggtggca 24422717  T
Q  278 attattttattttaactaatt 298  Q
    || |||| |||||||||||||    
T  24422718 ataatttaattttaactaatt 24422738  T

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Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 237 - 298
Target Start/End: Complemental strand, 35911785 - 35911724
Alignment:
Q  237 tgctgactgtgtaaacttgtatgtgtggcatccaagtggcaattattttattttaactaatt 298  Q
    ||||||| ||| |||| ||||  ||||||||||| |||||||||||||||||||||||||||    
T  35911785 tgctgacggtgcaaacatgtacatgtggcatccaggtggcaattattttattttaactaatt 35911724  T

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Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 260 - 298
Target Start/End: Complemental strand, 34934621 - 34934583
Alignment:
Q  260 tgtggcatccaagtggcaattattttattttaactaatt 298  Q
    ||||||||||| |||||||||||||||||||||||||||    
T  34934621 tgtggcatccaggtggcaattattttattttaactaatt 34934583  T

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Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 178 - 295
Target Start/End: Original strand, 27263011 - 27263128
Alignment:
Q  178 aaaatagtccctggacccattttcttgctgatttggcacattctcgcatatgtggtatgtgctgactgtgtaaacttgtatgtgtggcatccaagtggca 277  Q
    |||| |||||||| ||||| |||| | ||||||| |||| ||   ||| | |||| || || ||||||||||||| |||||  |||||||| ||||| ||    
T  27263011 aaaacagtccctgaacccactttcatactgattttgcacctttaagcagacgtggcatatgttgactgtgtaaacatgtatacgtggcatctaagtgaca 27263110  T
Q  278 attattttattttaacta 295  Q
    ||||||||||||| ||||    
T  27263111 attattttatttttacta 27263128  T

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Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 178 - 251
Target Start/End: Original strand, 30722219 - 30722292
Alignment:
Q  178 aaaatagtccctggacccattttcttgctgatttggcacattctcgcatatgtggtatgtgctgactgtgtaaa 251  Q
    ||||||||||||||||||| ||||||||||||||| | |||| | || || |||| |  |||||||||||||||    
T  30722219 aaaatagtccctggacccactttcttgctgatttgtctcatttttgcctacgtggcaaatgctgactgtgtaaa 30722292  T

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Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 178 - 298
Target Start/End: Complemental strand, 24427325 - 24427205
Alignment:
Q  178 aaaatagtccctggacccattttcttgctgatttggcacattctcgcatatgtggtatgtgctgactgtgtaaacttgtatgtgtggcatccaagtggca 277  Q
    ||||||||||||| ||||| ||||||| ||||||| | |||| | || ||| ||  || |||||||| || |||| ||||  |||||||||||  |||||    
T  24427325 aaaatagtccctgaacccactttcttggtgatttgtctcatttttgcctatttgaaatatgctgactatgcaaacctgtacatgtggcatccagttggca 24427226  T
Q  278 attattttattttaactaatt 298  Q
    ||||||  |||||| ||||||    
T  24427225 attattcaattttacctaatt 24427205  T

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Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 178 - 298
Target Start/End: Original strand, 35721201 - 35721321
Alignment:
Q  178 aaaatagtccctggacccattttcttgctgatttggcacattctcgcatatgtggtatgtgctgactgtgtaaacttgtatgtgtggcatccaagtggca 277  Q
    |||||||||||||| |||| ||| | | ||||||| ||||||   |||||  ||| |  ||||||| ||| |||| | ||  ||||||||| | ||||||    
T  35721201 aaaatagtccctggtcccactttttcgatgatttgtcacatttatgcatacttggcagatgctgacggtgcaaacatttacatgtggcatctaggtggca 35721300  T
Q  278 attattttattttaactaatt 298  Q
    |||||||||||||||||||||    
T  35721301 attattttattttaactaatt 35721321  T

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Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 178 - 215
Target Start/End: Complemental strand, 46075009 - 46074972
Alignment:
Q  178 aaaatagtccctggacccattttcttgctgatttggca 215  Q
    ||||||||||||||||||| ||||||||| ||||||||    
T  46075009 aaaatagtccctggacccactttcttgcttatttggca 46074972  T

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Target: chr2 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 29 - 102
Target Start/End: Complemental strand, 12820967 - 12820892
Alignment:
Q  29 aatagtggcagttacata--tagggaaatataattatttagaggatatattatttgctttatatgatatgaaacat 102  Q
    ||||||||||||||||||  |||||| ||||| |||||||| ||||||| ||||| ||| ||||||||||||||||    
T  12820967 aatagtggcagttacataaatagggagatatagttatttaggggatatactattttcttcatatgatatgaaacat 12820892  T

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Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 178 - 295
Target Start/End: Original strand, 1777572 - 1777689
Alignment:
Q  178 aaaatagtccctggacccattttcttgctgatttggcacattctcgcatatgtggtatgtgctgactgtgtaaacttgtatgtgtggcatccaagtggca 277  Q
    |||| ||| |||||||||| |||| |||||||||| ||| ||   ||| | |||| || || |||| |||||||| |||||  |||||||| ||||| ||    
T  1777572 aaaacagttcctggacccactttcatgctgatttgccacctttaagcagacgtggcatatgttgacagtgtaaacatgtatacgtggcatctaagtgaca 1777671  T
Q  278 attattttattttaacta 295  Q
    ||||||||||||| ||||    
T  1777672 attattttatttttacta 1777689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 178 - 219
Target Start/End: Original strand, 25977973 - 25978014
Alignment:
Q  178 aaaatagtccctggacccattttcttgctgatttggcacatt 219  Q
    |||| |||||||||||||| ||||||||||||||||||||||    
T  25977973 aaaaaagtccctggacccactttcttgctgatttggcacatt 25978014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 33; Significance: 0.000000003; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 178 - 242
Target Start/End: Complemental strand, 3880453 - 3880389
Alignment:
Q  178 aaaatagtccctggacccattttcttgctgatttggcacattctcgcatatgtggtatgtgctga 242  Q
    |||| ||||||||||||||||||||| |||||||||| |||| | || ||||||| | |||||||    
T  3880453 aaaaaagtccctggacccattttcttactgatttggctcattgttgcttatgtggcaggtgctga 3880389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 46 - 102
Target Start/End: Complemental strand, 10078308 - 10078252
Alignment:
Q  46 atagggaaatataattatttagaggatatattatttgctttatatgatatgaaacat 102  Q
    ||||||| ||| | |||||||| ||||||| ||||| ||||||||||||||||||||    
T  10078308 atagggagataaagttatttaggggatatactattttctttatatgatatgaaacat 10078252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 178 - 216
Target Start/End: Original strand, 202682 - 202720
Alignment:
Q  178 aaaatagtccctggacccattttcttgctgatttggcac 216  Q
    |||||||||||||||| || |||||||||||||||||||    
T  202682 aaaatagtccctggactcactttcttgctgatttggcac 202720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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