View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2965_high_3 (Length: 339)

Name: NF2965_high_3
Description: NF2965
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2965_high_3
NF2965_high_3
[»] chr8 (17 HSPs)
chr8 (11-339)||(2516862-2517190)
chr8 (24-86)||(10170375-10170437)
chr8 (131-180)||(2515727-2515776)
chr8 (43-94)||(34259803-34259854)
chr8 (157-263)||(2506022-2506128)
chr8 (53-95)||(3066041-3066083)
chr8 (250-306)||(2512635-2512692)
chr8 (55-88)||(25799154-25799187)
chr8 (53-93)||(1979413-1979453)
chr8 (55-89)||(16824392-16824426)
chr8 (57-91)||(31551857-31551891)
chr8 (43-85)||(43534933-43534975)
chr8 (55-88)||(25488801-25488834)
chr8 (43-95)||(6501494-6501546)
chr8 (43-95)||(14496033-14496084)
chr8 (53-89)||(28144067-28144103)
chr8 (53-89)||(29096951-29096987)
[»] chr6 (10 HSPs)
chr6 (53-94)||(34625734-34625775)
chr6 (53-95)||(34598537-34598579)
chr6 (59-94)||(14244051-14244086)
chr6 (56-86)||(6294557-6294587)
chr6 (53-95)||(30781416-30781458)
chr6 (53-91)||(32577482-32577520)
chr6 (53-90)||(4945264-4945301)
chr6 (53-85)||(7564182-7564214)
chr6 (54-94)||(17422274-17422314)
chr6 (43-95)||(24102051-24102103)
[»] chr4 (9 HSPs)
chr4 (53-94)||(32369930-32369971)
chr4 (42-84)||(18783987-18784029)
chr4 (42-95)||(3458172-3458225)
chr4 (52-95)||(26369447-26369490)
chr4 (53-92)||(31277042-31277081)
chr4 (52-94)||(12441788-12441830)
chr4 (53-94)||(843159-843200)
chr4 (57-86)||(2796554-2796583)
chr4 (53-89)||(12710008-12710044)
[»] chr3 (12 HSPs)
chr3 (53-88)||(49636844-49636879)
chr3 (43-94)||(28576716-28576767)
chr3 (53-100)||(32166201-32166248)
chr3 (53-96)||(47542533-47542576)
chr3 (53-86)||(18268023-18268056)
chr3 (43-88)||(21768612-21768657)
chr3 (47-88)||(55053787-55053828)
chr3 (43-95)||(7563206-7563258)
chr3 (48-88)||(31207845-31207885)
chr3 (53-89)||(36301998-36302034)
chr3 (43-87)||(41036776-41036820)
chr3 (70-118)||(55108269-55108317)
[»] chr1 (6 HSPs)
chr1 (46-89)||(26698193-26698236)
chr1 (53-100)||(29230059-29230106)
chr1 (53-87)||(48317604-48317638)
chr1 (53-94)||(1118414-1118455)
chr1 (54-87)||(4769327-4769360)
chr1 (56-93)||(6440870-6440907)
[»] chr2 (13 HSPs)
chr2 (48-94)||(11781576-11781622)
chr2 (53-93)||(14268751-14268791)
chr2 (53-92)||(13252319-13252358)
chr2 (52-94)||(6736490-6736532)
chr2 (53-95)||(8765419-8765461)
chr2 (53-95)||(28341323-28341365)
chr2 (29-86)||(30563417-30563474)
chr2 (41-93)||(31095144-31095197)
chr2 (53-93)||(34687007-34687048)
chr2 (53-93)||(34709419-34709460)
chr2 (43-88)||(39459790-39459835)
chr2 (53-85)||(17427327-17427359)
chr2 (53-93)||(42043215-42043255)
[»] scaffold0147 (1 HSPs)
scaffold0147 (42-95)||(37670-37723)
[»] chr7 (8 HSPs)
chr7 (53-116)||(18750852-18750917)
chr7 (53-94)||(28266474-28266515)
chr7 (58-94)||(31020714-31020750)
chr7 (57-96)||(40826513-40826552)
chr7 (56-88)||(7139462-7139494)
chr7 (54-94)||(13803668-13803708)
chr7 (59-87)||(13859528-13859556)
chr7 (43-95)||(22371078-22371130)
[»] chr5 (3 HSPs)
chr5 (53-84)||(28322251-28322282)
chr5 (53-86)||(9878050-9878083)
chr5 (42-87)||(39828473-39828518)


Alignment Details
Target: chr8 (Bit Score: 325; Significance: 0; HSPs: 17)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 325; E-Value: 0
Query Start/End: Original strand, 11 - 339
Target Start/End: Complemental strand, 2517190 - 2516862
Alignment:
Q  11 caaaggcatgtctggtatctgacaccaacataacacgtgtagttacattcaattaattcattttctcaaattattaccggtgtcattgtcagtgtcgtag 110  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2517190 caaaggcatgtctggtatctgacaccaacataacacgtgtagttacattcaattaattcattttctcaaattattaccggtgtcattgtcagtgtcgtag 2517091  T
Q  111 tgtcgtgtcctgtgtgagtgcttcataggttttgaatttccctaattacaataacaacaatcaaggtctttgctcaatacttatattccgaaagtactgt 210  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2517090 tgtcgtgtcctgtgtgagtgcttcataggttttgaatttccctaattacaataacaacaatcaaggtctttgctcaatacttatattccgaaagtactgt 2516991  T
Q  211 tacattgcaaaattactagaatttgcctaaatatattagaaaatttcaattctacaagtgttacatagttagcctaatcgaagagaattttagcagccag 310  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  2516990 tacattgcaaaattactagaatttgcctaaatatattagaaaatttcaattctacaagtgttacatagttagcctaatcgaagaaaattttagcagccag 2516891  T
Q  311 cagaaacaaacaatagtttcttaattctt 339  Q
    |||||||||||||||||||||||||||||    
T  2516890 cagaaacaaacaatagtttcttaattctt 2516862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 24 - 86
Target Start/End: Original strand, 10170375 - 10170437
Alignment:
Q  24 ggtatctgacaccaacataacacgtgtagttacattcaattaattcattttctcaaattatta 86  Q
    |||||| |||||||||| ||| | ||||||||||||||||||||| |||||||||||||||||    
T  10170375 ggtatcagacaccaacacaacccatgtagttacattcaattaatttattttctcaaattatta 10170437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 131 - 180
Target Start/End: Complemental strand, 2515776 - 2515727
Alignment:
Q  131 cttcataggttttgaatttccctaattacaataacaacaatcaaggtctt 180  Q
    ||||||||||| | ||||||||||||||||||||||||||||||||||||    
T  2515776 cttcataggttctaaatttccctaattacaataacaacaatcaaggtctt 2515727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 43 - 94
Target Start/End: Original strand, 34259803 - 34259854
Alignment:
Q  43 acacgtgtagttacattcaattaattcattttctcaaattattaccggtgtc 94  Q
    |||||| |||||| ||||||||| ||||||||||||||||||||||| ||||    
T  34259803 acacgtctagttatattcaattatttcattttctcaaattattaccgatgtc 34259854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 157 - 263
Target Start/End: Complemental strand, 2506128 - 2506022
Alignment:
Q  157 tacaataacaacaatcaaggtctttgctcaatacttatattccgaaagtactgttacattgcaaaattactagaatttgcctaaatatattagaaaattt 256  Q
    ||||||| ||||||||||||| |||||||| ||  |||||| ||||| |||||| |  |  | ||| |||||||||| |||||| | ||||| |||||||    
T  2506128 tacaatatcaacaatcaaggtttttgctcactagctatattacgaaattactgtaatgtaaccaaaatactagaattagcctaattttattacaaaattt 2506029  T
Q  257 caattct 263  Q
    |||||||    
T  2506028 caattct 2506022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 53 - 95
Target Start/End: Complemental strand, 3066083 - 3066041
Alignment:
Q  53 ttacattcaattaattcattttctcaaattattaccggtgtca 95  Q
    ||||||||||||||| |||||||||||||||||||| ||||||    
T  3066083 ttacattcaattaatccattttctcaaattattacctgtgtca 3066041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 250 - 306
Target Start/End: Complemental strand, 2512692 - 2512635
Alignment:
Q  250 aaaatttcaattctacaagtgtt-acatagttagcctaatcgaagagaattttagcag 306  Q
    ||||||||||||||| || |||| |||||||||||||||| |||||||||| ||||||    
T  2512692 aaaatttcaattctagaaatgtttacatagttagcctaattgaagagaattgtagcag 2512635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 55 - 88
Target Start/End: Complemental strand, 25799187 - 25799154
Alignment:
Q  55 acattcaattaattcattttctcaaattattacc 88  Q
    ||||||||||||||||||||||||||||||||||    
T  25799187 acattcaattaattcattttctcaaattattacc 25799154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 53 - 93
Target Start/End: Complemental strand, 1979453 - 1979413
Alignment:
Q  53 ttacattcaattaattcattttctcaaattattaccggtgt 93  Q
    ||||||| |||||||| ||||||||||||||||||||||||    
T  1979453 ttacatttaattaattaattttctcaaattattaccggtgt 1979413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 55 - 89
Target Start/End: Complemental strand, 16824426 - 16824392
Alignment:
Q  55 acattcaattaattcattttctcaaattattaccg 89  Q
    |||||||| ||||||||||||||||||||||||||    
T  16824426 acattcaaataattcattttctcaaattattaccg 16824392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 57 - 91
Target Start/End: Original strand, 31551857 - 31551891
Alignment:
Q  57 attcaattaattcattttctcaaattattaccggt 91  Q
    |||||||| ||||||||||||||||||||||||||    
T  31551857 attcaatttattcattttctcaaattattaccggt 31551891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 43 - 85
Target Start/End: Complemental strand, 43534975 - 43534933
Alignment:
Q  43 acacgtgtagttacattcaattaattcattttctcaaattatt 85  Q
    |||| ||||||||||||||| || |||||||||||||||||||    
T  43534975 acacatgtagttacattcaaatatttcattttctcaaattatt 43534933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 55 - 88
Target Start/End: Complemental strand, 25488834 - 25488801
Alignment:
Q  55 acattcaattaattcattttctcaaattattacc 88  Q
    ||||||||||||||||||||||||||||| ||||    
T  25488834 acattcaattaattcattttctcaaattaatacc 25488801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 43 - 95
Target Start/End: Complemental strand, 6501546 - 6501494
Alignment:
Q  43 acacgtgtagttacattcaattaattcattttctcaaattattaccggtgtca 95  Q
    |||| ||| |||||||| ||||| |||||| ||||||||||||||| ||||||    
T  6501546 acacatgtggttacatttaattatttcattctctcaaattattaccagtgtca 6501494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 43 - 95
Target Start/End: Original strand, 14496033 - 14496084
Alignment:
Q  43 acacgtgtagttacattcaattaattcattttctcaaattattaccggtgtca 95  Q
    |||| |||||||||||||||| | | ||||||||||||||||||| |||||||    
T  14496033 acacatgtagttacattcaatcact-cattttctcaaattattactggtgtca 14496084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 53 - 89
Target Start/End: Original strand, 28144067 - 28144103
Alignment:
Q  53 ttacattcaattaattcattttctcaaattattaccg 89  Q
    |||||||| ||||||| ||||||||||||||||||||    
T  28144067 ttacattctattaattgattttctcaaattattaccg 28144103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 53 - 89
Target Start/End: Complemental strand, 29096987 - 29096951
Alignment:
Q  53 ttacattcaattaattcattttctcaaattattaccg 89  Q
    |||||||||||||||| ||||||| ||||||||||||    
T  29096987 ttacattcaattaatttattttcttaaattattaccg 29096951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 38; Significance: 0.000000000002; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 53 - 94
Target Start/End: Complemental strand, 34625775 - 34625734
Alignment:
Q  53 ttacattcaattaattcattttctcaaattattaccggtgtc 94  Q
    |||||||||||||||||||||||||||||||||| |||||||    
T  34625775 ttacattcaattaattcattttctcaaattattatcggtgtc 34625734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 53 - 95
Target Start/End: Complemental strand, 34598579 - 34598537
Alignment:
Q  53 ttacattcaattaattcattttctcaaattattaccggtgtca 95  Q
    |||||| ||||||||||||||||||||||||||| ||||||||    
T  34598579 ttacatccaattaattcattttctcaaattattatcggtgtca 34598537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 59 - 94
Target Start/End: Original strand, 14244051 - 14244086
Alignment:
Q  59 tcaattaattcattttctcaaattattaccggtgtc 94  Q
    ||||||||||||||||||||||||| ||||||||||    
T  14244051 tcaattaattcattttctcaaattactaccggtgtc 14244086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 56 - 86
Target Start/End: Original strand, 6294557 - 6294587
Alignment:
Q  56 cattcaattaattcattttctcaaattatta 86  Q
    |||||||||||||||||||||||||||||||    
T  6294557 cattcaattaattcattttctcaaattatta 6294587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 53 - 95
Target Start/End: Original strand, 30781416 - 30781458
Alignment:
Q  53 ttacattcaattaattcattttctcaaattattaccggtgtca 95  Q
    ||||||||| |||||||||||| |||||||| |||||||||||    
T  30781416 ttacattcagttaattcattttatcaaattagtaccggtgtca 30781458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 53 - 91
Target Start/End: Original strand, 32577482 - 32577520
Alignment:
Q  53 ttacattcaattaattcattttctcaaattattaccggt 91  Q
    ||||||||||||||||||||||||||||| || ||||||    
T  32577482 ttacattcaattaattcattttctcaaatcatcaccggt 32577520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 53 - 90
Target Start/End: Complemental strand, 4945301 - 4945264
Alignment:
Q  53 ttacattcaattaattcattttctcaaattattaccgg 90  Q
    ||||||||||||||||||||||||||||  ||||||||    
T  4945301 ttacattcaattaattcattttctcaaacaattaccgg 4945264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 53 - 85
Target Start/End: Original strand, 7564182 - 7564214
Alignment:
Q  53 ttacattcaattaattcattttctcaaattatt 85  Q
    |||||||||||||||| ||||||||||||||||    
T  7564182 ttacattcaattaatttattttctcaaattatt 7564214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 54 - 94
Target Start/End: Original strand, 17422274 - 17422314
Alignment:
Q  54 tacattcaattaattcattttctcaaattattaccggtgtc 94  Q
    ||||||||||||  ||||||||||||||||||| |||||||    
T  17422274 tacattcaattatatcattttctcaaattattatcggtgtc 17422314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 43 - 95
Target Start/End: Original strand, 24102051 - 24102103
Alignment:
Q  43 acacgtgtagttacattcaattaattcattttctcaaattattaccggtgtca 95  Q
    |||||||| ||||||||||| || |||| || |||||||||||||| ||||||    
T  24102051 acacgtgtggttacattcaaatagttcacttactcaaattattaccagtgtca 24102103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 38; Significance: 0.000000000002; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 53 - 94
Target Start/End: Original strand, 32369930 - 32369971
Alignment:
Q  53 ttacattcaattaattcattttctcaaattattaccggtgtc 94  Q
    |||||||||||||||||||||||||||||||||| |||||||    
T  32369930 ttacattcaattaattcattttctcaaattattatcggtgtc 32369971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 42 - 84
Target Start/End: Complemental strand, 18784029 - 18783987
Alignment:
Q  42 aacacgtgtagttacattcaattaattcattttctcaaattat 84  Q
    |||||||||| ||||||||||||| ||||||||||||||||||    
T  18784029 aacacgtgtaattacattcaattacttcattttctcaaattat 18783987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 42 - 95
Target Start/End: Original strand, 3458172 - 3458225
Alignment:
Q  42 aacacgtgtagttacattcaattaattcattttctcaaattattaccggtgtca 95  Q
    ||||||| || ||||||||||||| ||||||||||| | |||||||||||||||    
T  3458172 aacacgtataattacattcaattatttcattttctccatttattaccggtgtca 3458225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 52 - 95
Target Start/End: Original strand, 26369447 - 26369490
Alignment:
Q  52 gttacattcaattaattcattttctcaaattattaccggtgtca 95  Q
    ||||||||||| |||||||||||||||||||| ||||| |||||    
T  26369447 gttacattcaaataattcattttctcaaattactaccgatgtca 26369490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 53 - 92
Target Start/End: Original strand, 31277042 - 31277081
Alignment:
Q  53 ttacattcaattaattcattttctcaaattattaccggtg 92  Q
    ||||||||||||| |||||||||||||||||||| |||||    
T  31277042 ttacattcaattagttcattttctcaaattattatcggtg 31277081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 52 - 94
Target Start/End: Original strand, 12441788 - 12441830
Alignment:
Q  52 gttacattcaattaattcattttctcaaattattaccggtgtc 94  Q
    |||| |||||||| ||||||||||||||| |||||||||||||    
T  12441788 gttagattcaattgattcattttctcaaagtattaccggtgtc 12441830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 53 - 94
Target Start/End: Original strand, 843159 - 843200
Alignment:
Q  53 ttacattcaattaattcattttctcaaattattaccggtgtc 94  Q
    |||| ||||| ||||||||||||||||||||||||| |||||    
T  843159 ttacgttcaaataattcattttctcaaattattaccagtgtc 843200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 57 - 86
Target Start/End: Complemental strand, 2796583 - 2796554
Alignment:
Q  57 attcaattaattcattttctcaaattatta 86  Q
    ||||||||||||||||||||||||||||||    
T  2796583 attcaattaattcattttctcaaattatta 2796554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 53 - 89
Target Start/End: Complemental strand, 12710044 - 12710008
Alignment:
Q  53 ttacattcaattaattcattttctcaaattattaccg 89  Q
    |||| ||||||||||| ||||||||||||||||||||    
T  12710044 ttacgttcaattaatttattttctcaaattattaccg 12710008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 36; Significance: 0.00000000003; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 53 - 88
Target Start/End: Original strand, 49636844 - 49636879
Alignment:
Q  53 ttacattcaattaattcattttctcaaattattacc 88  Q
    ||||||||||||||||||||||||||||||||||||    
T  49636844 ttacattcaattaattcattttctcaaattattacc 49636879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 43 - 94
Target Start/End: Complemental strand, 28576767 - 28576716
Alignment:
Q  43 acacgtgtagttacattcaattaattcattttctcaaattattaccggtgtc 94  Q
    |||| |||| ||||||||||||   |||||||||||||||||||||||||||    
T  28576767 acacatgtaattacattcaattttgtcattttctcaaattattaccggtgtc 28576716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 53 - 100
Target Start/End: Original strand, 32166201 - 32166248
Alignment:
Q  53 ttacattcaattaattcattttctcaaattattaccggtgtcattgtc 100  Q
    |||||||||||||  ||||||||||||||||||||| |||||| ||||    
T  32166201 ttacattcaattatgtcattttctcaaattattaccagtgtcaatgtc 32166248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 53 - 96
Target Start/End: Complemental strand, 47542576 - 47542533
Alignment:
Q  53 ttacattcaattaattcattttctcaaattattaccggtgtcat 96  Q
    |||||||||| || |||||||||||||||||||||| |||||||    
T  47542576 ttacattcaaatagttcattttctcaaattattaccagtgtcat 47542533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 53 - 86
Target Start/End: Original strand, 18268023 - 18268056
Alignment:
Q  53 ttacattcaattaattcattttctcaaattatta 86  Q
    |||| |||||||||||||||||||||||||||||    
T  18268023 ttacgttcaattaattcattttctcaaattatta 18268056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 43 - 88
Target Start/End: Complemental strand, 21768657 - 21768612
Alignment:
Q  43 acacgtgtagttacattcaattaattcattttctcaaattattacc 88  Q
    |||| ||| ||||| ||||| |||||||||||||||||||||||||    
T  21768657 acacatgtggttacgttcaaataattcattttctcaaattattacc 21768612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 47 - 88
Target Start/End: Complemental strand, 55053828 - 55053787
Alignment:
Q  47 gtgtagttacattcaattaattcattttctcaaattattacc 88  Q
    |||||||||||||||  ||||||||||||| |||||||||||    
T  55053828 gtgtagttacattcatataattcattttcttaaattattacc 55053787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 43 - 95
Target Start/End: Original strand, 7563206 - 7563258
Alignment:
Q  43 acacgtgtagttacattcaattaattcattttctcaaattattaccggtgtca 95  Q
    |||||||||| |||||||||||| | ||| ||||||||||||||  |||||||    
T  7563206 acacgtgtagatacattcaattattccatattctcaaattattattggtgtca 7563258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 48 - 88
Target Start/End: Complemental strand, 31207885 - 31207845
Alignment:
Q  48 tgtagttacattcaattaattcattttctcaaattattacc 88  Q
    ||||||||||||||||||  |||||||||||||| ||||||    
T  31207885 tgtagttacattcaattatgtcattttctcaaataattacc 31207845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 53 - 89
Target Start/End: Complemental strand, 36302034 - 36301998
Alignment:
Q  53 ttacattcaattaattcattttctcaaattattaccg 89  Q
    |||||||||||||||| ||||||||| ||||||||||    
T  36302034 ttacattcaattaatttattttctcacattattaccg 36301998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 43 - 87
Target Start/End: Original strand, 41036776 - 41036820
Alignment:
Q  43 acacgtgtagttacattcaattaattcattttctcaaattattac 87  Q
    |||||||| ||||||||||| ||  ||||||||||||||||||||    
T  41036776 acacgtgtggttacattcaactatatcattttctcaaattattac 41036820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 70 - 118
Target Start/End: Original strand, 55108269 - 55108317
Alignment:
Q  70 attttctcaaattattaccggtgtcattgtcagtgtcgtagtgtcgtgt 118  Q
    ||||| |||||||||||||||||||||||||| | |  |||||||||||    
T  55108269 attttatcaaattattaccggtgtcattgtcaatatattagtgtcgtgt 55108317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 36; Significance: 0.00000000003; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 46 - 89
Target Start/End: Original strand, 26698193 - 26698236
Alignment:
Q  46 cgtgtagttacattcaattaattcattttctcaaattattaccg 89  Q
    |||||| |||||||||||||||||||||||||| ||||||||||    
T  26698193 cgtgtaattacattcaattaattcattttctcagattattaccg 26698236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 53 - 100
Target Start/End: Complemental strand, 29230106 - 29230059
Alignment:
Q  53 ttacattcaattaattcattttctcaaattattaccggtgtcattgtc 100  Q
    |||||||||||||  |||||||||||||||||||||||||||| ||||    
T  29230106 ttacattcaattatgtcattttctcaaattattaccggtgtcaatgtc 29230059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 53 - 87
Target Start/End: Complemental strand, 48317638 - 48317604
Alignment:
Q  53 ttacattcaattaattcattttctcaaattattac 87  Q
    ||||||||||||| |||||||||||||||||||||    
T  48317638 ttacattcaattatttcattttctcaaattattac 48317604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 53 - 94
Target Start/End: Original strand, 1118414 - 1118455
Alignment:
Q  53 ttacattcaattaattcattttctcaaattattaccggtgtc 94  Q
    |||||||||||||||||||||| ||||||||| ||| |||||    
T  1118414 ttacattcaattaattcattttttcaaattatcacccgtgtc 1118455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 54 - 87
Target Start/End: Original strand, 4769327 - 4769360
Alignment:
Q  54 tacattcaattaattcattttctcaaattattac 87  Q
    ||||||||||||| ||||||||||||||||||||    
T  4769327 tacattcaattaactcattttctcaaattattac 4769360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 56 - 93
Target Start/End: Original strand, 6440870 - 6440907
Alignment:
Q  56 cattcaattaattcattttctcaaattattaccggtgt 93  Q
    |||||||| |||||||||||||||||||||||| ||||    
T  6440870 cattcaataaattcattttctcaaattattaccagtgt 6440907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 35; Significance: 0.0000000001; HSPs: 13)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 48 - 94
Target Start/End: Original strand, 11781576 - 11781622
Alignment:
Q  48 tgtagttacattcaattaattcattttctcaaattattaccggtgtc 94  Q
    ||||||||||||||| || ||||||||||||||||||||| ||||||    
T  11781576 tgtagttacattcaaatatttcattttctcaaattattactggtgtc 11781622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 53 - 93
Target Start/End: Original strand, 14268751 - 14268791
Alignment:
Q  53 ttacattcaattaattcattttctcaaattattaccggtgt 93  Q
    |||| ||||||||| ||||||||||||||||||||||||||    
T  14268751 ttacgttcaattaagtcattttctcaaattattaccggtgt 14268791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 53 - 92
Target Start/End: Original strand, 13252319 - 13252358
Alignment:
Q  53 ttacattcaattaattcattttctcaaattattaccggtg 92  Q
    |||||||||| ||||||||||||||| |||||||||||||    
T  13252319 ttacattcaactaattcattttctcacattattaccggtg 13252358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 52 - 94
Target Start/End: Complemental strand, 6736532 - 6736490
Alignment:
Q  52 gttacattcaattaattcattttctcaaattattaccggtgtc 94  Q
    |||||||||||||| | ||| ||||||||||||||||||||||    
T  6736532 gttacattcaattattccatattctcaaattattaccggtgtc 6736490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 53 - 95
Target Start/End: Original strand, 8765419 - 8765461
Alignment:
Q  53 ttacattcaattaattcattttctcaaattattaccggtgtca 95  Q
    ||||||||||||||||| |||||| ||||||| ||||||||||    
T  8765419 ttacattcaattaattcgttttcttaaattatcaccggtgtca 8765461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 53 - 95
Target Start/End: Complemental strand, 28341365 - 28341323
Alignment:
Q  53 ttacattcaattaattcattttctcaaattattaccggtgtca 95  Q
    ||||||| |||||||||||||||||||| ||||||||| ||||    
T  28341365 ttacatttaattaattcattttctcaaactattaccggcgtca 28341323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 29 - 86
Target Start/End: Complemental strand, 30563474 - 30563417
Alignment:
Q  29 ctgacaccaacataacacgtgtagttacattcaattaattcattttctcaaattatta 86  Q
    |||||||| ||| ||||| | |||||||||| |||||  |||||||||||||||||||    
T  30563474 ctgacaccgacacaacacctatagttacattgaattatgtcattttctcaaattatta 30563417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 41 - 93
Target Start/End: Complemental strand, 31095197 - 31095144
Alignment:
Q  41 taacacgtgtagttacattcaattaattc-attttctcaaattattaccggtgt 93  Q
    |||||| |||||||| ||||||||| ||| ||||||||||||||||||| ||||    
T  31095197 taacacatgtagttatattcaattacttccattttctcaaattattaccagtgt 31095144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 53 - 93
Target Start/End: Complemental strand, 34687048 - 34687007
Alignment:
Q  53 ttacattcaattaat-tcattttctcaaattattaccggtgt 93  Q
    |||| |||||||||| ||||||||||||||||||||||||||    
T  34687048 ttactttcaattaatatcattttctcaaattattaccggtgt 34687007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 53 - 93
Target Start/End: Complemental strand, 34709460 - 34709419
Alignment:
Q  53 ttacattcaattaat-tcattttctcaaattattaccggtgt 93  Q
    |||| |||||||||| ||||||||||||||||||||||||||    
T  34709460 ttactttcaattaatatcattttctcaaattattaccggtgt 34709419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 43 - 88
Target Start/End: Complemental strand, 39459835 - 39459790
Alignment:
Q  43 acacgtgtagttacattcaattaattcattttctcaaattattacc 88  Q
    ||||||||  ||||||||||||||||||||| || |||||||||||    
T  39459835 acacgtgtgattacattcaattaattcatttccttaaattattacc 39459790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 53 - 85
Target Start/End: Original strand, 17427327 - 17427359
Alignment:
Q  53 ttacattcaattaattcattttctcaaattatt 85  Q
    |||| ||||||||||||||||||||||||||||    
T  17427327 ttaccttcaattaattcattttctcaaattatt 17427359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 53 - 93
Target Start/End: Original strand, 42043215 - 42043255
Alignment:
Q  53 ttacattcaattaattcattttctcaaattattaccggtgt 93  Q
    |||||||||||||||||||||| | ||||||||| ||||||    
T  42043215 ttacattcaattaattcattttattaaattattatcggtgt 42043255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0147 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: scaffold0147
Description:

Target: scaffold0147; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 42 - 95
Target Start/End: Original strand, 37670 - 37723
Alignment:
Q  42 aacacgtgtagttacattcaattaattcattttctcaaattattaccggtgtca 95  Q
    ||||||| || ||||||||||||| ||||||||||| | |||||||||||||||    
T  37670 aacacgtataattacattcaattatttcattttctccatttattaccggtgtca 37723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 34; Significance: 0.0000000005; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 53 - 116
Target Start/End: Complemental strand, 18750917 - 18750852
Alignment:
Q  53 ttacattcaattaattcattttctcaaattattaccggtgtc-at-tgtcagtgtcgtagtgtcgt 116  Q
    |||||||||||||  ||||||||| |||||||||||| |||| || ||||||||||||||||||||    
T  18750917 ttacattcaattatgtcattttcttaaattattaccgttgtcgatgtgtcagtgtcgtagtgtcgt 18750852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 53 - 94
Target Start/End: Complemental strand, 28266515 - 28266474
Alignment:
Q  53 ttacattcaattaattcattttctcaaattattaccggtgtc 94  Q
    |||||| ||||||||| |||||||||||||||||||||||||    
T  28266515 ttacatccaattaatttattttctcaaattattaccggtgtc 28266474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 58 - 94
Target Start/End: Original strand, 31020714 - 31020750
Alignment:
Q  58 ttcaattaattcattttctcaaattattaccggtgtc 94  Q
    ||||||||||||||||||||||||| |||||||||||    
T  31020714 ttcaattaattcattttctcaaattgttaccggtgtc 31020750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 57 - 96
Target Start/End: Complemental strand, 40826552 - 40826513
Alignment:
Q  57 attcaattaattcattttctcaaattattaccggtgtcat 96  Q
    |||||||||||||||||||||||||||| ||| |||||||    
T  40826552 attcaattaattcattttctcaaattatcaccagtgtcat 40826513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 56 - 88
Target Start/End: Original strand, 7139462 - 7139494
Alignment:
Q  56 cattcaattaattcattttctcaaattattacc 88  Q
    ||||||||||||||||||||||||| |||||||    
T  7139462 cattcaattaattcattttctcaaaatattacc 7139494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 54 - 94
Target Start/End: Complemental strand, 13803708 - 13803668
Alignment:
Q  54 tacattcaattaattcattttctcaaattattaccggtgtc 94  Q
    |||| ||||||| |||||||||||||||||||||| |||||    
T  13803708 tacactcaattatttcattttctcaaattattacctgtgtc 13803668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 59 - 87
Target Start/End: Complemental strand, 13859556 - 13859528
Alignment:
Q  59 tcaattaattcattttctcaaattattac 87  Q
    |||||||||||||||||||||||||||||    
T  13859556 tcaattaattcattttctcaaattattac 13859528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 43 - 95
Target Start/End: Complemental strand, 22371130 - 22371078
Alignment:
Q  43 acacgtgtagttacattcaattaattcattttctcaaattattaccggtgtca 95  Q
    |||| |||||||||||||||||| ||| |||||||| |||| |||| ||||||    
T  22371130 acacatgtagttacattcaattatttccttttctcatattaataccagtgtca 22371078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 32; Significance: 0.000000008; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 53 - 84
Target Start/End: Complemental strand, 28322282 - 28322251
Alignment:
Q  53 ttacattcaattaattcattttctcaaattat 84  Q
    ||||||||||||||||||||||||||||||||    
T  28322282 ttacattcaattaattcattttctcaaattat 28322251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 53 - 86
Target Start/End: Original strand, 9878050 - 9878083
Alignment:
Q  53 ttacattcaattaattcattttctcaaattatta 86  Q
    ||||||||||||||||||| ||||||||||||||    
T  9878050 ttacattcaattaattcatattctcaaattatta 9878083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 42 - 87
Target Start/End: Complemental strand, 39828518 - 39828473
Alignment:
Q  42 aacacgtgtagttacattcaattaattcattttctcaaattattac 87  Q
    ||||| ||| |||||||||||||| ||||| |||||||||||||||    
T  39828518 aacacatgtggttacattcaattatttcatattctcaaattattac 39828473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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