View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2965_low_1 (Length: 533)
Name: NF2965_low_1
Description: NF2965
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2965_low_1 |
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Alignment Details
Target: chr1 (Bit Score: 292; Significance: 1e-164; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 292; E-Value: 1e-164
Query Start/End: Original strand, 19 - 361
Target Start/End: Complemental strand, 11881466 - 11881123
Alignment:
| Q |
19 |
aaggagttggtgaaggcttaggcttgtcacattctttgaaatgtttctttgaagcataagcaaatggcttagccttgagcacaacctcgtacttgtcttt |
118 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11881466 |
aaggagttggtgaaggcttaggcttctcacattctttgaaatgtttctttgaagcataagcaaatggcttagccttgagcacaacctcgtacttgtcttt |
11881367 |
T |
|
| Q |
119 |
ggatttcaagtacaactttgttccttgatttagctttgtaggtatattgaagggtgaacccttaggtggagcatatagggcagccttgcacactgtggaa |
218 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
11881366 |
ggatttcaagtacaactttgttccttgatttagctttgtaggtatgttgaagggtgaacccttaggtggagcatatagggcagccttgcacactgtcgaa |
11881267 |
T |
|
| Q |
219 |
ccatatttgacatagtcaaagtccttaactgtgatggcatactttccattgttcttagttttaccataagccttaacgattttgcttccggctttgcatg |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| || |||||||| ||||||||||||| |
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| T |
11881266 |
ccatatttgacatagtcaaagtccttaactgtgatggcatactttccattgttcttagtttttccataagccttgacaattttgctcccggctttgcatg |
11881167 |
T |
|
| Q |
319 |
ttacctcaacaacagcacctgc-cccaaaacaaaattagtttac |
361 |
Q |
| |
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| |||||||||||||| ||||| |||| || ||||||||||||| |
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| T |
11881166 |
tcacctcaacaacagctcctgcacccataataaaattagtttac |
11881123 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 19 - 361
Target Start/End: Complemental strand, 11903966 - 11903623
Alignment:
| Q |
19 |
aaggagttggtgaaggcttaggcttgtcacattctttgaaatgtttctttgaagcataagcaaatggcttagccttgagcacaacctcgtacttgtcttt |
118 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11903966 |
aaggagttggtgaaggcttaggcttctcacattctttgaaatgtttctttgaagcataagcaaatggcttagccttgagcacaacctcgtacttgtcttt |
11903867 |
T |
|
| Q |
119 |
ggatttcaagtacaactttgttccttgatttagctttgtaggtatattgaagggtgaacccttaggtggagcatatagggcagccttgcacactgtggaa |
218 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||| ||||||||||||||| ||| |
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| T |
11903866 |
ggatttcaagtacaactttgttccttgatttagctttgtaggtatgttgaagggtgaacccttaggtggagcataaagggtagccttgcacactgtcgaa |
11903767 |
T |
|
| Q |
219 |
ccatatttgacatagtcaaagtccttaactgtgatggcatactttccattgttcttagttttaccataagccttaacgattttgcttccggctttgcatg |
318 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| || |||||||| ||||||||||||| |
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| T |
11903766 |
ccatatttgacatagtcaaagtccttaactgtgatggcatactttccattgttcttagtttttccataagccttgacaattttgctcccggctttgcatg |
11903667 |
T |
|
| Q |
319 |
ttacctcaacaacagcacctgc-cccaaaacaaaattagtttac |
361 |
Q |
| |
|
| |||||||||||||| ||||| |||| || ||||||||||||| |
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|
| T |
11903666 |
tcacctcaacaacagctcctgcacccataataaaattagtttac |
11903623 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 265; E-Value: 1e-147
Query Start/End: Original strand, 19 - 351
Target Start/End: Complemental strand, 11890832 - 11890500
Alignment:
| Q |
19 |
aaggagttggtgaaggcttaggcttgtcacattctttgaaatgtttctttgaagcataagcaaatggcttagccttgagcacaacctcgtacttgtcttt |
118 |
Q |
| |
|
||||||||||||||||||| | ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
11890832 |
aaggagttggtgaaggcttggacttctcacattctttgaaatgtttctttgaagcataagcaaatggcttagccttgagcacaacctcgtacttgtcttt |
11890733 |
T |
|
| Q |
119 |
ggatttcaagtacaactttgttccttgatttagctttgtaggtatattgaagggtgaacccttaggtggagcatatagggcagccttgcacactgtggaa |
218 |
Q |
| |
|
||||||||||||||| ||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||| ||| |
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| T |
11890732 |
ggatttcaagtacaagtttgttccttggtttagctttgtaggtatgttgaagggtgaacccttaggtggagcataaagggcagccttgcacactgttgaa |
11890633 |
T |
|
| Q |
219 |
ccatatttgacatagtcaaagtccttaactgtgatggcatactttccattgttcttagttttaccataagccttaacgattttgcttccggctttgcatg |
318 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||| | ||||||||| ||||||||||||| |
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|
| T |
11890632 |
ccatatttgacatagtcaaagtccttaactgtgatggcatactttccattgatcttagttttaccgtaagccttgatgattttgctcccggctttgcatg |
11890533 |
T |
|
| Q |
319 |
ttacctcaacaacagcacctgccccaaaacaaa |
351 |
Q |
| |
|
| || |||||||||||||||| |||| |||||| |
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| T |
11890532 |
tcacttcaacaacagcacctgtcccataacaaa |
11890500 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 19 - 338
Target Start/End: Original strand, 52819833 - 52820152
Alignment:
| Q |
19 |
aaggagttggtgaaggcttaggcttgtcacattctttgaaatgtttctttgaagcataagcaaatggcttagccttgagcacaacctcgtacttgtcttt |
118 |
Q |
| |
|
|||||||||||||||||||||| || |||||||||| |||| ||||| |||||||| || ||||||||||||||||||||||| || ||||||||||| |
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| T |
52819833 |
aaggagttggtgaaggcttaggtttttcacattcttcataatgcttcttagaagcatatgcgaatggcttagccttgagcacaacttcatacttgtcttt |
52819932 |
T |
|
| Q |
119 |
ggatttcaagtacaactttgttccttgatttagctttgtaggtatattgaagggtgaacccttaggtggagcatatagggcagccttgcacactgtggaa |
218 |
Q |
| |
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||||| | | ||| | ||||| | ||| ||||| |||||||| |||||||| || | ||||||||||||||||| || |||||||| ||| |
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| T |
52819933 |
agattttaccttcaagtcagttccctcattgagcttagtaggtatgttgaagggagagtctttaggtggagcatatagtttggctttgcacaccacagaa |
52820032 |
T |
|
| Q |
219 |
ccatatttgacatagtcaaagtccttaactgtgatggcatactttccattgttcttagttttaccataagccttaacgattttgcttccggctttgcatg |
318 |
Q |
| |
|
|||||||| ||||||| ||||| || ||||||||||||||||||||| ||||||||||||| |||||||| | ||| || ||||| ||||||||| |
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| T |
52820033 |
ccatattttacatagttaaagtttggaattgtgatggcatactttccattactcttagttttaccgtaagccttgatgatgttccttccagctttgcatt |
52820132 |
T |
|
| Q |
319 |
ttacctcaacaacagcacct |
338 |
Q |
| |
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| |||||||||||||||||| |
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|
| T |
52820133 |
tgacctcaacaacagcacct |
52820152 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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