View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2965_low_3 (Length: 388)
Name: NF2965_low_3
Description: NF2965
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2965_low_3 |
 | |
|
| [»] chr2 (1 HSPs) |
| |
|
| [»] chr4 (1 HSPs) |
| |
|
Alignment Details
Target: chr5 (Bit Score: 116; Significance: 6e-59; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 116; E-Value: 6e-59
Query Start/End: Original strand, 18 - 197
Target Start/End: Original strand, 38481752 - 38481931
Alignment:
| Q |
18 |
aatagatactccttacacaaatccatccaactatgcacgttgtataatatcatatactttcaatttataaccacttcccctcacggttccaccaattctc |
117 |
Q |
| |
|
||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
38481752 |
aatagatactcctcacacaaatccatccaagtatgcacgttgtataatatcatatactttcaatttataaccacttcccctcacggtttcaccaattctc |
38481851 |
T |
|
| Q |
118 |
ccgaatgtgggatgaaaagttgtcacttgagtcctcatatccacaattctatttcttctccatgtcatcaataactcatc |
197 |
Q |
| |
|
|| |||||||||||| ||||||||||||| | |||||||| ||||||| ||| |||| ||| |||| |||||||||| |
|
|
| T |
38481852 |
cccgatgtgggatgaatagttgtcacttgattgctcatatcaacaattccattccttcctcataccatcgataactcatc |
38481931 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 111; Significance: 6e-56; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 111; E-Value: 6e-56
Query Start/End: Original strand, 242 - 388
Target Start/End: Original strand, 42636361 - 42636507
Alignment:
| Q |
242 |
ttgttagagcaactccagttgtagtattttgactcagtccgccaacatgtcacaacctaaatatcagtttttcatgggttcatttgttggagtccgccaa |
341 |
Q |
| |
|
|||||||||||||| |||| ||||||||||||| ||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
42636361 |
ttgttagagcaactacagtggtagtattttgacccagtccgtcaacatgtcacaacacaaatatcagtttttcatgggttcatttgttggagtctgccaa |
42636460 |
T |
|
| Q |
342 |
gctggagttatcggtacttcaacaagtaacgttgctttctgacacca |
388 |
Q |
| |
|
||||||||||||| ||||||| ||||||||||||||||||||||||| |
|
|
| T |
42636461 |
gctggagttatcgttacttcagcaagtaacgttgctttctgacacca |
42636507 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 108; Significance: 4e-54; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 245 - 388
Target Start/End: Complemental strand, 38553346 - 38553203
Alignment:
| Q |
245 |
ttagagcaactccagttgtagtattttgactcagtccgccaacatgtcacaacctaaatatcagtttttcatgggttcatttgttggagtccgccaagct |
344 |
Q |
| |
|
|||||||||||||| | ||||||||||||| || ||||||| |||||||||||| |||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
38553346 |
ttagagcaactccactggtagtattttgacccaatccgccagcatgtcacaacccaaatatcagtttttcatgagttcatttgttggagtccgccaagct |
38553247 |
T |
|
| Q |
345 |
ggagttatcggtacttcaacaagtaacgttgctttctgacacca |
388 |
Q |
| |
|
|||||||||| ||||||| ||||||||||||||||||||||||| |
|
|
| T |
38553246 |
ggagttatcgttacttcagcaagtaacgttgctttctgacacca |
38553203 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University