View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2966-Insertion-1 (Length: 1105)

Name: NF2966-Insertion-1
Description: NF2966
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2966-Insertion-1
NF2966-Insertion-1
[»] chr3 (10 HSPs)
chr3 (356-1105)||(8102088-8102844)
chr3 (5-215)||(8101730-8101940)
chr3 (526-769)||(40147438-40147681)
chr3 (843-1038)||(40147174-40147370)
chr3 (169-215)||(25775578-25775624)
chr3 (268-307)||(1852600-1852639)
chr3 (280-310)||(3164112-3164142)
chr3 (272-310)||(37077318-37077356)
chr3 (169-215)||(40052383-40052429)
chr3 (169-210)||(25211606-25211647)
[»] chr4 (17 HSPs)
chr4 (576-752)||(7656227-7656403)
chr4 (595-753)||(7606108-7606266)
chr4 (591-753)||(7636932-7637094)
chr4 (591-767)||(7615118-7615294)
chr4 (591-671)||(7628556-7628636)
chr4 (897-1024)||(7615418-7615546)
chr4 (898-1023)||(7655961-7656087)
chr4 (696-766)||(39070932-39071002)
chr4 (897-1029)||(7628789-7628922)
chr4 (898-1029)||(7637236-7637368)
chr4 (169-215)||(18513177-18513223)
chr4 (206-289)||(35157980-35158063)
chr4 (169-222)||(20633535-20633588)
chr4 (169-246)||(22440559-22440635)
chr4 (977-1029)||(7606485-7606537)
chr4 (280-310)||(753014-753044)
chr4 (169-246)||(10499229-10499305)
[»] chr7 (11 HSPs)
chr7 (591-767)||(8936167-8936343)
chr7 (595-753)||(8941826-8941983)
chr7 (591-726)||(8913705-8913840)
chr7 (820-1024)||(8935924-8936129)
chr7 (918-1024)||(8910985-8911092)
chr7 (169-244)||(28155596-28155671)
chr7 (254-308)||(18215229-18215283)
chr7 (254-307)||(37742486-37742539)
chr7 (275-308)||(21139057-21139090)
chr7 (281-310)||(25481844-25481873)
chr7 (169-214)||(35862023-35862068)
[»] chr6 (9 HSPs)
chr6 (599-764)||(6500375-6500540)
chr6 (890-1023)||(6500647-6500781)
chr6 (588-657)||(11968792-11968861)
chr6 (206-308)||(17841584-17841686)
chr6 (183-232)||(21924907-21924956)
chr6 (169-290)||(7938096-7938217)
chr6 (254-309)||(17302517-17302572)
chr6 (169-210)||(5569825-5569866)
chr6 (169-290)||(9027158-9027284)
[»] scaffold0020 (1 HSPs)
scaffold0020 (169-246)||(135265-135347)
[»] chr8 (5 HSPs)
chr8 (254-308)||(36450797-36450851)
chr8 (586-667)||(15196335-15196416)
chr8 (206-305)||(13844591-13844689)
chr8 (709-753)||(15745030-15745074)
chr8 (280-309)||(43737900-43737929)
[»] chr5 (6 HSPs)
chr5 (254-308)||(14674231-14674285)
chr5 (254-311)||(43001759-43001816)
chr5 (274-310)||(7175082-7175118)
chr5 (169-284)||(2436908-2437028)
chr5 (169-215)||(27932306-27932352)
chr5 (280-309)||(39205847-39205876)
[»] chr1 (7 HSPs)
chr1 (206-307)||(46348378-46348479)
chr1 (169-215)||(2218299-2218345)
chr1 (169-215)||(16297223-16297269)
chr1 (169-215)||(46940750-46940796)
chr1 (254-303)||(18556499-18556548)
chr1 (169-210)||(31694641-31694682)
chr1 (254-310)||(37598791-37598848)
[»] chr2 (4 HSPs)
chr2 (169-215)||(10535687-10535733)
chr2 (254-308)||(37558939-37558993)
chr2 (278-308)||(1886955-1886985)
chr2 (169-215)||(11223795-11223841)
[»] scaffold0190 (2 HSPs)
scaffold0190 (586-657)||(4319-4390)
scaffold0190 (696-753)||(4435-4492)
[»] scaffold0004 (1 HSPs)
scaffold0004 (169-216)||(92892-92939)
[»] scaffold0793 (1 HSPs)
scaffold0793 (280-310)||(4964-4994)


Alignment Details
Target: chr3 (Bit Score: 654; Significance: 0; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 654; E-Value: 0
Query Start/End: Original strand, 356 - 1105
Target Start/End: Original strand, 8102088 - 8102844
Alignment:
Q  356 gtagatataggaacacaaatcgattgtagcaacaacgatgaagatgtacataagcaacaaaatcaatagcgttttcccccaaaaaagtttaatttaacaa 455  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||| |||||||||    
T  8102088 gtagatattggaacacaaatcgattgtagcaacaacgatgaagatgtacataagcaacataatcaatagcgttttccccgaaaaaagttttatttaacaa 8102187  T
Q  456 aagaaagactagaacatcgttaatttactacggattacaacacacaaattcaagaatatgaactaaaatagtaccaaaccaattttgcaaattttaaacc 555  Q
    ||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8102188 aagaaagactagaacatcgttaatttattatggattacaacacacaaattcaagaatatgaactaaaatagtaccaaaccaattttgcaaattttaaacc 8102287  T
Q  556 cacgttaattggatacaaagtccatgaaaacaggatcatttcccattgcctccaaaatcttgtgaggaagacatacttgaaggtccatactaccttcttc 655  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8102288 cacgttaattggatacaaagttcatgaaaacaggatcatttcccattgcctccaaaatcttgtgaggaagacatacttgaaggtccatactaccttcttc 8102387  T
Q  656 tattccagcaaatacaacaaacagtccactttgtttatttccactgcgaactgccactggttttccccatccaaaattattgccataaacatcaaacctc 755  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  8102388 tattccagcaaatacagcaaacagtccactttgtttatttccactgcgaactgccactggttttccccatccaaaattattgccataaacatcaaaccac 8102487  T
Q  756 tgggaactgctactagccatcacatgataatcggcaacgttactatcaccaagtctatagatgattggatttctcacccaattctcatagtcattcttca 855  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8102488 tgggaactgctactagccaacacatgataatcggcaacgttactatcaccaagtctatagatgattggatttctcacccaattctcatagtcattcttca 8102587  T
Q  856 acttctcatttgagtgcaaagaaatcgtttcgtgcatcttccaagcacatttaccaagcccgccttcttccaacaactccccaactttcattgcaaccat 955  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  8102588 acttctcatttgagtgcaaacaaatcgtttcgtgcatcttccaagcacatttaccaaacccgccttcttccaacaactccccaactttcattgcaaccat 8102687  T
Q  956 agaagctacaacagcatttcc-aaataatcttccggcaatggtggaacaaacctttgtctaactcctatcccgaccataaaatatgcgttctcttgt-gc 1053  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |     
T  8102688 agaagctacaacagcatttccaaaataatcttccggcaatggtggaacaaacctttgtctaactcctatcccgaccataaaatatgcgttctcttgtggg 8102787  T
Q  1054 tcta--tggtc-gaac-gatcactgagcaccaaaggtgtgc-aaaagtgcttgaagg 1105  Q
    ||||  ||||| |||| |||||||||||||||||||||||| |||||||||||||||    
T  8102788 tctaattggtcggaacggatcactgagcaccaaaggtgtgcaaaaagtgcttgaagg 8102844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 183; E-Value: 2e-98
Query Start/End: Original strand, 5 - 215
Target Start/End: Original strand, 8101730 - 8101940
Alignment:
Q  5 acagaaaatacagcaatgaaatgcagattaagcaatctcagtcaatatcaggagcttctccaaatacaactttctacaaagtaactgtcatcactctctt 104  Q
    |||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  8101730 acagaaaatacagcaatgaagtgcagattaagcaatctcaatcaatatcaggagcttctccaaatacagctttctacaaagtaactgtcatcactctctt 8101829  T
Q  105 cttcatcactgttaacaacataatcagagttagatacactttcatatccagactactgtataccatgaagcacgaacactcctcagattaggcgtgtact 204  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||     
T  8101830 cttcatcactgttaacaacataatcagagttagatacactttcatatccagactactgtatactatgaagcacgaacactcctcagattagacgtgtacc 8101929  T
Q  205 ggtgtccgaca 215  Q
     ||||||||||    
T  8101930 agtgtccgaca 8101940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 116; E-Value: 2e-58
Query Start/End: Original strand, 526 - 769
Target Start/End: Complemental strand, 40147681 - 40147438
Alignment:
Q  526 gtaccaaaccaattttgcaaattttaaacccacgttaattggatacaaagtccatgaaaacaggatcatttcccattgcctccaaaatcttgtgaggaag 625  Q
    |||||||||  ||||||||||  |||||| |||  ||||| || ||||  ||||||||  || | |||||||||||||||||||||||||||||||||||    
T  40147681 gtaccaaactgattttgcaaaccttaaactcacactaattagacacaacatccatgaagtcatggtcatttcccattgcctccaaaatcttgtgaggaag 40147582  T
Q  626 acatacttgaaggtccatactaccttcttctattccagcaaatacaacaaacagtccactttgtttatttccactgcgaactgccactggttttccccat 725  Q
    ||| ||||||| |||||| |||||||||||| ||||||||||||||  || || |||||||  |||||||||||||||||||||||| |||| |||||||    
T  40147581 acacacttgaaagtccatgctaccttcttcttttccagcaaatacagtaatcattccacttattttatttccactgcgaactgccacaggttctccccat 40147482  T
Q  726 ccaaaattattgccataaacatcaaacctctgggaactgctact 769  Q
    ||||||| ||| |||||||||||||||| | ||||| |||||||    
T  40147481 ccaaaatcattaccataaacatcaaaccacggggaattgctact 40147438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 85; E-Value: 6e-40
Query Start/End: Original strand, 843 - 1038
Target Start/End: Complemental strand, 40147370 - 40147174
Alignment:
Q  843 tagtcattcttcaacttctcatttgagtgcaaagaaatcgtttcgtgcatcttccaagcacatttaccaagcccgccttcttccaacaactccccaactt 942  Q
    |||| |||||||||||  |||||||| |||||||||||| ||| ||| |||  |||||||| |||||||||||| || |||||||||||||| ||  |||    
T  40147370 tagtgattcttcaactcttcatttgactgcaaagaaatcattttgtgtatcgcccaagcacctttaccaagcccaccatcttccaacaactctcccgctt 40147271  T
Q  943 tcattgcaaccatagaagctacaacagcatttcc-aaataatcttccggcaatggtggaacaaacctttgtctaactcctatcccgaccataaaata 1038  Q
    |||||| |||| || || || ||||||||||||| ||||||||||| |||||||||||||||||||||  |||| |||||||| |||||||| ||||    
T  40147270 tcattgtaaccctacaaacttcaacagcatttccaaaataatcttcaggcaatggtggaacaaaccttgatctagctcctatcgcgaccatataata 40147174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 169 - 215
Target Start/End: Complemental strand, 25775624 - 25775578
Alignment:
Q  169 atgaagcacgaacactcctcagattaggcgtgtactggtgtccgaca 215  Q
    |||||||||||||||||||| |||||||||||| |||||||| ||||    
T  25775624 atgaagcacgaacactcctcggattaggcgtgtcctggtgtcggaca 25775578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 268 - 307
Target Start/End: Complemental strand, 1852639 - 1852600
Alignment:
Q  268 gtcagcgtgtcagtgtccgtgtctgtatccgtgcttcata 307  Q
    ||||||||||| |||||||| |||||||||||||||||||    
T  1852639 gtcagcgtgtccgtgtccgtatctgtatccgtgcttcata 1852600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 280 - 310
Target Start/End: Original strand, 3164112 - 3164142
Alignment:
Q  280 gtgtccgtgtctgtatccgtgcttcatagat 310  Q
    |||||||||||||||||||||||||||||||    
T  3164112 gtgtccgtgtctgtatccgtgcttcatagat 3164142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 272 - 310
Target Start/End: Complemental strand, 37077356 - 37077318
Alignment:
Q  272 gcgtgtcagtgtccgtgtctgtatccgtgcttcatagat 310  Q
    |||||||| ||||||||||| ||||||||||||||||||    
T  37077356 gcgtgtcactgtccgtgtctttatccgtgcttcatagat 37077318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 169 - 215
Target Start/End: Complemental strand, 40052429 - 40052383
Alignment:
Q  169 atgaagcacgaacactcctcagattaggcgtgtactggtgtccgaca 215  Q
    |||||||||||||||||||| |||||||||||| | |||||| ||||    
T  40052429 atgaagcacgaacactcctcggattaggcgtgtcccggtgtcggaca 40052383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 169 - 210
Target Start/End: Complemental strand, 25211647 - 25211606
Alignment:
Q  169 atgaagcacgaacactcctcagattaggcgtgtactggtgtc 210  Q
    ||||||||| |||||| |||||||||||||||| ||||||||    
T  25211647 atgaagcacaaacacttctcagattaggcgtgtcctggtgtc 25211606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 93; Significance: 1e-44; HSPs: 17)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 93; E-Value: 1e-44
Query Start/End: Original strand, 576 - 752
Target Start/End: Complemental strand, 7656403 - 7656227
Alignment:
Q  576 tccatgaaaacaggatcatttcccattgcctccaaaatcttgtgaggaagacatacttgaaggtccatactaccttcttctattccagcaaatacaacaa 675  Q
    ||||||||  ||||||||||||||||||||||||||||||||| ||||||||| ||||||||||| || ||| |||||||||||||||||||  ||  ||    
T  7656403 tccatgaactcaggatcatttcccattgcctccaaaatcttgtaaggaagacacacttgaaggtcaatgctagcttcttctattccagcaaaggcacaaa 7656304  T
Q  676 acagtccactttgtttatttccactgcgaactgccactggttttccccatccaaaattattgccataaacatcaaac 752  Q
     || |||| ||  |||||||||||| ||||||||||| || |||||||||||||||| ||| |||||||||||||||    
T  7656303 ccattccatttgttttatttccactacgaactgccacaggctttccccatccaaaatcattaccataaacatcaaac 7656227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 79; E-Value: 2e-36
Query Start/End: Original strand, 595 - 753
Target Start/End: Original strand, 7606108 - 7606266
Alignment:
Q  595 ttcccattgcctccaaaatcttgtgaggaagacatacttgaaggtccatactaccttcttctattccagcaaatacaacaaacagtccactttgtttatt 694  Q
    |||||||||||||||||| ||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||   |  | |||| ||  |||||     
T  7606108 ttcccattgcctccaaaaccttgtaaggaagacatacttgaaggtcaatactaccttcttctattccagcaaatacatttacaattccatttattttata 7606207  T
Q  695 tccactgcgaactgccactggttttccccatccaaaattattgccataaacatcaaacc 753  Q
    |||||| |||||||| |  |||||||||||||| |||| ||| ||||||||||||||||    
T  7606208 tccactacgaactgctataggttttccccatccgaaatcattaccataaacatcaaacc 7606266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 75; E-Value: 6e-34
Query Start/End: Original strand, 591 - 753
Target Start/End: Original strand, 7636932 - 7637094
Alignment:
Q  591 tcatttcccattgcctccaaaatcttgtgaggaagacatacttgaaggtccatactaccttcttctattccagcaaatacaacaaacagtccactttgtt 690  Q
    |||||||||||| ||||||||||||   |||||||||| ||||||||||| |||||||||||||||||||| ||||||||   ||  |||||| ||  ||    
T  7636932 tcatttcccattccctccaaaatctcacgaggaagacaaacttgaaggtctatactaccttcttctattccggcaaataccgtaataagtccatttattt 7637031  T
Q  691 tatttccactgcgaactgccactggttttccccatccaaaattattgccataaacatcaaacc 753  Q
    ||| |||||| ||||||||||  || |||||||||||||||| ||| ||||||||||||||||    
T  7637032 tatatccactacgaactgccagaggctttccccatccaaaatcattaccataaacatcaaacc 7637094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 73; E-Value: 9e-33
Query Start/End: Original strand, 591 - 767
Target Start/End: Original strand, 7615118 - 7615294
Alignment:
Q  591 tcatttcccattgcctccaaaatcttgtgaggaagacatacttgaaggtccatactaccttcttctattccagcaaatacaacaaacagtccactttgtt 690  Q
    |||||||||||||||||||||||||  || | |||||| |||||||| || |||||||||||||||||||||||||| ||   ||  |||||| ||  ||    
T  7615118 tcatttcccattgcctccaaaatctcatgtgaaagacaaacttgaagatctatactaccttcttctattccagcaaaaaccgtaataagtccatttcctt 7615217  T
Q  691 tatttccactgcgaactgccactggttttccccatccaaaattattgccataaacatcaaacctctgggaactgcta 767  Q
    ||| |||||| ||||||||||| || |||||||| ||||||| ||| |||||||||||||||| | | |||||||||    
T  7615218 tatatccactacgaactgccacaggctttccccaaccaaaatcattaccataaacatcaaaccacggagaactgcta 7615294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 61; E-Value: 1e-25
Query Start/End: Original strand, 591 - 671
Target Start/End: Original strand, 7628556 - 7628636
Alignment:
Q  591 tcatttcccattgcctccaaaatcttgtgaggaagacatacttgaaggtccatactaccttcttctattccagcaaataca 671  Q
    ||||||||||||||||||||||||| || ||||||||| | ||||||||| ||||||||||||||||||||||||||||||    
T  7628556 tcatttcccattgcctccaaaatctcgtaaggaagacagatttgaaggtcaatactaccttcttctattccagcaaataca 7628636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 897 - 1024
Target Start/End: Original strand, 7615418 - 7615546
Alignment:
Q  897 caagcacatttaccaagcccgccttcttccaacaactccccaactttcattgcaaccatagaagctacaacagcatttcc-aaataatcttccggcaatg 995  Q
    ||||||| ||||| ||| || |||||||||| |||||||||||||||||||  ||||||| ||  || ||  |||||||| ||||||| ||| || ||||    
T  7615418 caagcacctttacaaagtccaccttcttccaccaactccccaactttcattttaaccatacaacttataagtgcatttccaaaataatattctggtaatg 7615517  T
Q  996 gtggaacaaacctttgtctaactcctatc 1024  Q
    ||||||| |||||| ||| ||||||||||    
T  7615518 gtggaactaaccttggtcgaactcctatc 7615546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 43; E-Value: 0.000000000000007
Query Start/End: Original strand, 898 - 1023
Target Start/End: Complemental strand, 7656087 - 7655961
Alignment:
Q  898 aagcacatttaccaagcccgccttcttccaacaactccccaactttcattgcaaccatagaagctacaacagcatttccaaa-taatcttccggcaatgg 996  Q
    |||||| |||||||| ||| ||||| ||||||||||||||||||||||||  || |    || ||| ||  || |||||||| |||||||||||||||||    
T  7656087 aagcacctttaccaatcccaccttcctccaacaactccccaactttcattttaaacccgcaacctataatcgcgtttccaaaataatcttccggcaatgg 7655988  T
Q  997 tggaacaaacctttgtctaactcctat 1023  Q
    ||||||||  ||| |||||||||||||    
T  7655987 tggaacaagtcttggtctaactcctat 7655961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 696 - 766
Target Start/End: Original strand, 39070932 - 39071002
Alignment:
Q  696 ccactgcgaactgccactggttttccccatccaaaattattgccataaacatcaaacctctgggaactgct 766  Q
    ||||| ||||| |||||||| |||||||| ||||||| ||||||| |||||||||||||| | ||||||||    
T  39070932 ccacttcgaaccgccactggctttccccagccaaaatcattgccaaaaacatcaaacctcggagaactgct 39071002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 38; E-Value: 0.000000000007
Query Start/End: Original strand, 897 - 1029
Target Start/End: Original strand, 7628789 - 7628922
Alignment:
Q  897 caagcacatttaccaagcccgccttcttccaacaactccccaactttcattgcaaccatagaagctacaacagcatttccaaa-taatcttccggcaatg 995  Q
    ||||||| ||||| ||| || ||||| |||||||| ||| || ||||||||  ||||||| ||  || ||  ||||||||||| |||||||| || ||||    
T  7628789 caagcacctttacaaagtccaccttcctccaacaattcctcagctttcattttaaccatacaacttataagtgcatttccaaaataatcttctggtaatg 7628888  T
Q  996 gtggaacaaacctttgtctaactcctatcccgac 1029  Q
    |||||| || |||| |||||||||||||| ||||    
T  7628889 gtggaataagccttggtctaactcctatcgcgac 7628922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 898 - 1029
Target Start/End: Original strand, 7637236 - 7637368
Alignment:
Q  898 aagcacatttaccaagcccgccttcttccaacaactccccaactttcattgcaaccatagaagctacaacagcatttccaaa-taatcttccggcaatgg 996  Q
    |||||| ||||| ||| || ||||| |||||||| |||||| ||||||||  ||||||| ||  || ||  ||||||||||| |||||||| || || ||    
T  7637236 aagcacctttacaaagtccaccttcctccaacaattccccagctttcattttaaccatacaacttataagtgcatttccaaaataatcttctggtaacgg 7637335  T
Q  997 tggaacaaacctttgtctaactcctatcccgac 1029  Q
    |||||| |||||| ||| |||||||||| ||||    
T  7637336 tggaactaaccttggtcgaactcctatcacgac 7637368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 169 - 215
Target Start/End: Original strand, 18513177 - 18513223
Alignment:
Q  169 atgaagcacgaacactcctcagattaggcgtgtactggtgtccgaca 215  Q
    |||||||||| |||||||||||||||||||||| |||||||| ||||    
T  18513177 atgaagcacggacactcctcagattaggcgtgtcctggtgtcggaca 18513223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 206 - 289
Target Start/End: Original strand, 35157980 - 35158063
Alignment:
Q  206 gtgtccgacatcgacacatataattactccaaattatgtgannnnnnnaaattattagtagcgtcagcgtgtcagtgtccgtgt 289  Q
    ||||| |||| |||||| ||||||||| | |||||||||||       ||||||||||| ||||| ||||||||||||||||||    
T  35157980 gtgtcagacaccgacacttataattacactaaattatgtgatttttccaaattattagttgcgtcggcgtgtcagtgtccgtgt 35158063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 169 - 222
Target Start/End: Complemental strand, 20633588 - 20633535
Alignment:
Q  169 atgaagcacgaacactcctcagattaggcgtgtactggtgtccgacatcgacac 222  Q
    |||||||||||||||||||  ||||||||||||  |||||||||||| ||||||    
T  20633588 atgaagcacgaacactccttggattaggcgtgtcttggtgtccgacaccgacac 20633535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 169 - 246
Target Start/End: Original strand, 22440559 - 22440635
Alignment:
Q  169 atgaagcacgaacactcctcagattaggcgtgtactggtgtccgacatcgacacatataattactccaaattatgtga 246  Q
    |||||||||| ||||||||| |||||||||||| || ||||| |||| || ||||||||||||| |  ||||||||||    
T  22440559 atgaagcacggacactcctcggattaggcgtgtcctagtgtcggaca-cgtcacatataattacactgaattatgtga 22440635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 977 - 1029
Target Start/End: Original strand, 7606485 - 7606537
Alignment:
Q  977 aaataatcttccggcaatggtggaacaaacctttgtctaactcctatcccgac 1029  Q
    ||||||||||| || |||||||||||||||||| ||| |||||||||| ||||    
T  7606485 aaataatcttctggtaatggtggaacaaaccttggtccaactcctatcacgac 7606537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 280 - 310
Target Start/End: Original strand, 753014 - 753044
Alignment:
Q  280 gtgtccgtgtctgtatccgtgcttcatagat 310  Q
    |||||||||||||||||||||||||||||||    
T  753014 gtgtccgtgtctgtatccgtgcttcatagat 753044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 169 - 246
Target Start/End: Original strand, 10499229 - 10499305
Alignment:
Q  169 atgaagcacgaacactcctcagattaggcgtgtactggtgtccgacatcgacacatataattactccaaattatgtga 246  Q
    |||||||||| ||| ||||| ||||||||||||   || ||||||||  ||||||||||||||| | |||||||||||    
T  10499229 atgaagcacggacaatcctcggattaggcgtgtgtcgg-gtccgacactgacacatataattacactaaattatgtga 10499305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 69; Significance: 2e-30; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 69; E-Value: 2e-30
Query Start/End: Original strand, 591 - 767
Target Start/End: Complemental strand, 8936343 - 8936167
Alignment:
Q  591 tcatttcccattgcctccaaaatcttgtgaggaagacatacttgaaggtccatactaccttcttctattccagcaaatacaacaaacagtccactttgtt 690  Q
    |||||||||||||||||||||||||  |  |||||||| ||||||||||| |||||||||||||||||||| ||||||||   ||  |||||| ||  ||    
T  8936343 tcatttcccattgcctccaaaatctcatatggaagacaaacttgaaggtcaatactaccttcttctattccggcaaatactgtaataagtccatttgctt 8936244  T
Q  691 tatttccactgcgaactgccactggttttccccatccaaaattattgccataaacatcaaacctctgggaactgcta 767  Q
    ||| |||||  ||| |||| || || |||||||||||||||| ||| |||||||||||||||| | | |||||||||    
T  8936243 tatatccaccacgacctgctacaggctttccccatccaaaatcattaccataaacatcaaaccacggagaactgcta 8936167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 67; E-Value: 3e-29
Query Start/End: Original strand, 595 - 753
Target Start/End: Complemental strand, 8941983 - 8941826
Alignment:
Q  595 ttcccattgcctccaaaatcttgtgaggaagacatacttgaaggtccatactaccttcttctattccagcaaatacaacaaacagtccactttgtttatt 694  Q
    |||||||||||||||||| || || ||||||||||||||||||||| ||||||||||||||||||||||||||||||   |  | |||| ||  |||||     
T  8941983 ttcccattgcctccaaaacctcgtaaggaagacatacttgaaggtcaatactaccttcttctattccagcaaatacatttacaattccatttattttata 8941884  T
Q  695 tccactgcgaactgccactggttttccccatccaaaattattgccataaacatcaaacc 753  Q
    |||||| || ||||| |  |||||||||||||| |||| ||| ||||||||||||||||    
T  8941883 tccactacg-actgctataggttttccccatccgaaatcattaccataaacatcaaacc 8941826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 52; E-Value: 3e-20
Query Start/End: Original strand, 591 - 726
Target Start/End: Complemental strand, 8913840 - 8913705
Alignment:
Q  591 tcatttcccattgcctccaaaatcttgtgaggaagacatacttgaaggtccatactaccttcttctattccagcaaatacaacaaacagtccactttgtt 690  Q
    |||||||||||| ||||||||||||   |||||||||| ||||||||||| ||| ||||||||||||||||  |||||||   ||  |||||| ||  ||    
T  8913840 tcatttcccattccctccaaaatctcacgaggaagacaaacttgaaggtctataataccttcttctattccgacaaatactgtaataagtccatttattt 8913741  T
Q  691 tatttccactgcgaactgccactggttttccccatc 726  Q
    ||| |||||| ||||||||||| || ||||||||||    
T  8913740 tatatccactacgaactgccacaggctttccccatc 8913705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 42; E-Value: 0.00000000000003
Query Start/End: Original strand, 820 - 1024
Target Start/End: Complemental strand, 8936129 - 8935924
Alignment:
Q  820 ttggatttctcacccaattctcatagtcattcttcaacttctcatttgagtgcaaagaaatcgtttcgtgcatcttccaagcacatttaccaagcccgcc 919  Q
    |||||||||| | ||||  |||||||| |||||||||||||||||  | ||| |||| |||    | || |||||  ||||||| ||||| ||| || ||    
T  8936129 ttggatttcttaaccaagactcatagtgattcttcaacttctcatcagtgtgtaaagcaattaacttgttcatctcacaagcacctttacaaagtccacc 8936030  T
Q  920 ttcttccaacaactccccaactttcattgcaaccatagaagctacaacagcatttccaaa-taatcttccggcaatggtggaacaaacctttgtctaact 1018  Q
    ||| | ||||||||||||| || |||||  ||||||| ||  || ||| ||||||||||| |||| ||| || ||||||||||| |||||| ||| ||||    
T  8936029 ttccttcaacaactccccagctgtcattttaaccatacaacttataactgcatttccaaaataatattctggtaatggtggaactaaccttggtccaact 8935930  T
Q  1019 cctatc 1024  Q
    ||||||    
T  8935929 cctatc 8935924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 918 - 1024
Target Start/End: Complemental strand, 8911092 - 8910985
Alignment:
Q  918 ccttcttccaacaactccccaactttcattgcaaccatagaagctacaacagcatttcc-aaataatcttccggcaatggtggaacaaacctttgtctaa 1016  Q
    ||||| ||||||| ||||||||||||||||  ||||||| ||  |||||  |||||||| ||||||| ||| || ||||||||||| |||||| ||| ||    
T  8911092 ccttcctccaacagctccccaactttcattttaaccatacaacttacaattgcatttccaaaataatattctggtaatggtggaactaaccttggtccaa 8910993  T
Q  1017 ctcctatc 1024  Q
    ||||||||    
T  8910992 ctcctatc 8910985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 169 - 244
Target Start/End: Complemental strand, 28155671 - 28155596
Alignment:
Q  169 atgaagcacgaacactcctcagattaggcgtgtactggtgtccgacatcgacacatataattactccaaattatgt 244  Q
    |||||||||| ||| ||||  |||||||||||| ||||||||||||| |||||| | ||||||| || ||||||||    
T  28155671 atgaagcacggacattccttggattaggcgtgtcctggtgtccgacaccgacacttgtaattacaccgaattatgt 28155596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 254 - 308
Target Start/End: Original strand, 18215229 - 18215283
Alignment:
Q  254 aaattattagtagcgtcagcgtgtcagtgtccgtgtctgtatccgtgcttcatag 308  Q
    ||||||||||  ||||| |||||| |||||||||||||| |||||||||||||||    
T  18215229 aaattattagctgcgtcggcgtgttagtgtccgtgtctgcatccgtgcttcatag 18215283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 254 - 307
Target Start/End: Complemental strand, 37742539 - 37742486
Alignment:
Q  254 aaattattagtagcgtcagcgtgtcagtgtccgtgtctgtatccgtgcttcata 307  Q
    ||||||||||| | ||| ||||| ||||||||||||||||||||||| ||||||    
T  37742539 aaattattagtggtgtcggcgtggcagtgtccgtgtctgtatccgtgtttcata 37742486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 275 - 308
Target Start/End: Original strand, 21139057 - 21139090
Alignment:
Q  275 tgtcagtgtccgtgtctgtatccgtgcttcatag 308  Q
    |||||||||| |||||||||||||||||||||||    
T  21139057 tgtcagtgtctgtgtctgtatccgtgcttcatag 21139090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 281 - 310
Target Start/End: Complemental strand, 25481873 - 25481844
Alignment:
Q  281 tgtccgtgtctgtatccgtgcttcatagat 310  Q
    ||||||||||||||||||||||||||||||    
T  25481873 tgtccgtgtctgtatccgtgcttcatagat 25481844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 169 - 214
Target Start/End: Complemental strand, 35862068 - 35862023
Alignment:
Q  169 atgaagcacgaacactcctcagattaggcgtgtactggtgtccgac 214  Q
    |||||||||| ||||||||| |||||||||||| || |||||||||    
T  35862068 atgaagcacggacactcctcggattaggcgtgtcctcgtgtccgac 35862023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 66; Significance: 1e-28; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 66; E-Value: 1e-28
Query Start/End: Original strand, 599 - 764
Target Start/End: Original strand, 6500375 - 6500540
Alignment:
Q  599 cattgcctccaaaatcttgtgaggaagacatacttgaaggtccatactaccttcttctattccagcaaatacaacaaacagtccactttgtttatttcca 698  Q
    |||||| |||||| |||||| ||||||||| ||||||||||| |||||||||| |||| ||||||||||||||  || ||  |||  |  ||||||| ||    
T  6500375 cattgcttccaaagtcttgtaaggaagacaaacttgaaggtctatactaccttattcttttccagcaaatacactaaccataccatctattttatttaca 6500474  T
Q  699 ctgcgaactgccactggttttccccatccaaaattattgccataaacatcaaacctctgggaactg 764  Q
    ||||||| |||||| ||||| ||||||||||||| ||| ||||||| |||||||| | ||||||||    
T  6500475 ctgcgaaatgccacgggtttcccccatccaaaatcattaccataaatatcaaaccacggggaactg 6500540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 47; E-Value: 3e-17
Query Start/End: Original strand, 890 - 1023
Target Start/End: Original strand, 6500647 - 6500781
Alignment:
Q  890 catcttccaagcacatttaccaagcccgccttcttccaacaactccccaactttcattgcaaccatagaagctacaacagcatttcc-aaataatcttcc 988  Q
    ||||| |||||||| |||||||| ||||||||||||||||||||| ||| |||||||   |||| || || |||  ||||||||||| ||||||||||      
T  6500647 catctcccaagcacctttaccaatcccgccttcttccaacaactcaccagctttcatgctaaccctacaatctatcacagcatttccaaaataatcttgt 6500746  T
Q  989 ggcaatggtggaacaaacctttgtctaactcctat 1023  Q
    || ||| ||||||||| |||| ||||||| |||||    
T  6500747 ggtaatagtggaacaagccttggtctaacgcctat 6500781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 38; E-Value: 0.000000000007
Query Start/End: Original strand, 588 - 657
Target Start/End: Original strand, 11968792 - 11968861
Alignment:
Q  588 ggatcatttcccattgcctccaaaatcttgtgaggaagacatacttgaaggtccatactaccttcttcta 657  Q
    |||||||||  ||| |||||||||||||||| ||||||||| |||| || ||| ||||||||||||||||    
T  11968792 ggatcatttttcatggcctccaaaatcttgtaaggaagacacacttcaaagtctatactaccttcttcta 11968861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 206 - 308
Target Start/End: Original strand, 17841584 - 17841686
Alignment:
Q  206 gtgtccgacatcgacacatataattactccaaattatgtgannnnnnnaaattattagtagcgtcagcgtgtcagtgtccgtgtctgtatccgtgcttca 305  Q
    |||||||||| || ||| | ||||||| | |||||||||||       ||||||||||  | ||| ||||||||||||||||||| ||||| ||||||||    
T  17841584 gtgtccgacaccgtcacttgtaattacactaaattatgtgattttttcaaattattagctgtgtcggcgtgtcagtgtccgtgtccgtatcagtgcttca 17841683  T
Q  306 tag 308  Q
    |||    
T  17841684 tag 17841686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 183 - 232
Target Start/End: Original strand, 21924907 - 21924956
Alignment:
Q  183 ctcctcagattaggcgtgtactggtgtccgacatcgacacatataattac 232  Q
    |||||| |||||||||||| | ||||||||||| ||||||||||||||||    
T  21924907 ctcctcggattaggcgtgtcccggtgtccgacaccgacacatataattac 21924956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 169 - 290
Target Start/End: Complemental strand, 7938217 - 7938096
Alignment:
Q  169 atgaagcacgaacactcctcagattaggcgtgtactggtgtccgacatcgacacatataattactccaaattatgtgannnnnnnaaattattagtagcg 268  Q
    |||||||||| ||||||||| ||| ||||||||   |||||| |||| |||||| ||||||||| | ||||||| |||       ||||||||||  | |    
T  7938217 atgaagcacggacactcctcggatcaggcgtgtctcggtgtcggacaccgacacttataattacactaaattatatgattttttcaaattattagctgtg 7938118  T
Q  269 tcagcgtgtcagtgtccgtgtc 290  Q
    || |||||||||||||| ||||    
T  7938117 tcggcgtgtcagtgtccatgtc 7938096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 254 - 309
Target Start/End: Complemental strand, 17302572 - 17302517
Alignment:
Q  254 aaattattagtagcgtcagcgtgtcagtgtccgtgtctgtatccgtgcttcataga 309  Q
    ||||||||||| | |||||||||||||||| |||||| ||||| | ||||||||||    
T  17302572 aaattattagttgtgtcagcgtgtcagtgttcgtgtccgtatctgcgcttcataga 17302517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 169 - 210
Target Start/End: Complemental strand, 5569866 - 5569825
Alignment:
Q  169 atgaagcacgaacactcctcagattaggcgtgtactggtgtc 210  Q
    |||||||||| |||||||||||||||||||||| | ||||||    
T  5569866 atgaagcacggacactcctcagattaggcgtgttcaggtgtc 5569825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 169 - 290
Target Start/End: Complemental strand, 9027284 - 9027158
Alignment:
Q  169 atgaagcacgaacactcctcagattaggcgtgtactggtgtc-----cgacatcgacacatataattactccaaattatgtgannnnnnnaaattattag 263  Q
    ||||||||| |||||||||  |||||| ||||| | ||||||     ||||| |||||||||||||||| |  ||||||||||       ||||||||||    
T  9027284 atgaagcacaaacactccttggattagccgtgtcccggtgtcggacacgacaccgacacatataattacacggaattatgtgattatctcaaattattag 9027185  T
Q  264 tagcgtcagcgtgtcagtgtccgtgtc 290  Q
      | ||| |||||||||||||||||||    
T  9027184 cggtgtcggcgtgtcagtgtccgtgtc 9027158  T

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Target: scaffold0020 (Bit Score: 39; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0020
Description:

Target: scaffold0020; HSP #1
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 169 - 246
Target Start/End: Original strand, 135265 - 135347
Alignment:
Q  169 atgaagcacgaacactcctcagattaggcgtgtactggtgtc-----cgacatcgacacatataattactccaaattatgtga 246  Q
    ||||||||||||||| ||||||||||||||||| ||||||||     ||||| |||||||||||||||| |  ||||||||||    
T  135265 atgaagcacgaacacgcctcagattaggcgtgtcctggtgtcggacacgacaccgacacatataattacacagaattatgtga 135347  T

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Target: chr8 (Bit Score: 39; Significance: 0.000000000002; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 254 - 308
Target Start/End: Original strand, 36450797 - 36450851
Alignment:
Q  254 aaattattagtagcgtcagcgtgtcagtgtccgtgtctgtatccgtgcttcatag 308  Q
    ||||||||||| | ||| ||||||||||||||||||| |||||||||||||||||    
T  36450797 aaattattagttgtgtcggcgtgtcagtgtccgtgtccgtatccgtgcttcatag 36450851  T

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Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000007
Query Start/End: Original strand, 586 - 667
Target Start/End: Complemental strand, 15196416 - 15196335
Alignment:
Q  586 caggatcatttcccattgcctccaaaatcttgtgaggaagacatacttgaaggtccatactaccttcttctattccagcaaa 667  Q
    |||| |||||||||||  |||||||||||||||  |||||||| |||| || ||||||||| ||||||||| | ||||||||    
T  15196416 cagggtcatttcccatgacctccaaaatcttgtatggaagacacacttcaaagtccatacttccttcttctttaccagcaaa 15196335  T

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Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 206 - 305
Target Start/End: Original strand, 13844591 - 13844689
Alignment:
Q  206 gtgtccgacatcgacacatataattactccaaattatgtgannnnnnnaaattattagtagcgtcagcgtgtcagtgtccgtgtctgtatccgtgcttca 305  Q
    |||||||||| |||||||||||||||| |  ||||||||||       |||||||||| || ||| ||||||| |||| ||||||||||| |||||||||    
T  13844591 gtgtccgacaccgacacatataattacactcaattatgtgattttctcaaattattagcagtgtcggcgtgtccgtgt-cgtgtctgtattcgtgcttca 13844689  T

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Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 709 - 753
Target Start/End: Complemental strand, 15745074 - 15745030
Alignment:
Q  709 ccactggttttccccatccaaaattattgccataaacatcaaacc 753  Q
    |||| ||||||||||| ||||||| ||||||||||||||||||||    
T  15745074 ccacaggttttccccaaccaaaatcattgccataaacatcaaacc 15745030  T

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Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 280 - 309
Target Start/End: Original strand, 43737900 - 43737929
Alignment:
Q  280 gtgtccgtgtctgtatccgtgcttcataga 309  Q
    ||||||||||||||||||||||||||||||    
T  43737900 gtgtccgtgtctgtatccgtgcttcataga 43737929  T

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Target: chr5 (Bit Score: 39; Significance: 0.000000000002; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 254 - 308
Target Start/End: Complemental strand, 14674285 - 14674231
Alignment:
Q  254 aaattattagtagcgtcagcgtgtcagtgtccgtgtctgtatccgtgcttcatag 308  Q
    ||||||||||  | ||| |||||||||||||||||||||||||||||||||||||    
T  14674285 aaattattagctgtgtcggcgtgtcagtgtccgtgtctgtatccgtgcttcatag 14674231  T

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Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 254 - 311
Target Start/End: Complemental strand, 43001816 - 43001759
Alignment:
Q  254 aaattattagtagcgtcagcgtgtcagtgtccgtgtctgtatccgtgcttcatagatc 311  Q
    |||||||||| || |||  | |||||||||||||||| ||||||||||||||||||||    
T  43001816 aaattattagcagtgtcgacatgtcagtgtccgtgtccgtatccgtgcttcatagatc 43001759  T

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Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 274 - 310
Target Start/End: Original strand, 7175082 - 7175118
Alignment:
Q  274 gtgtcagtgtccgtgtctgtatccgtgcttcatagat 310  Q
    |||||||||||||||||||||||| ||||||||||||    
T  7175082 gtgtcagtgtccgtgtctgtatccatgcttcatagat 7175118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 169 - 284
Target Start/End: Complemental strand, 2437028 - 2436908
Alignment:
Q  169 atgaagcacgaacactcctcagattaggcgtgtactggtgtc-----cgacatcgacacatataattactccaaattatgtgannnnnnnaaattattag 263  Q
    |||||||||||||||||||| ||||||||||||  |||||||     ||||| ||||||||||||| ||  | ||||||||||       ||||||||||    
T  2437028 atgaagcacgaacactcctcggattaggcgtgtcttggtgtcggacacgacaccgacacatataatcacaacgaattatgtgatttttgcaaattattag 2436929  T
Q  264 tagcgtcagcgtgtcagtgtc 284  Q
      | ||| |||||||||||||    
T  2436928 cggtgtcggcgtgtcagtgtc 2436908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 169 - 215
Target Start/End: Complemental strand, 27932352 - 27932306
Alignment:
Q  169 atgaagcacgaacactcctcagattaggcgtgtactggtgtccgaca 215  Q
    ||||||||| ||||||||||  ||||||||||| |||||||||||||    
T  27932352 atgaagcacaaacactcctcgaattaggcgtgtcctggtgtccgaca 27932306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 280 - 309
Target Start/End: Complemental strand, 39205876 - 39205847
Alignment:
Q  280 gtgtccgtgtctgtatccgtgcttcataga 309  Q
    ||||||||||||||||||||||||||||||    
T  39205876 gtgtccgtgtctgtatccgtgcttcataga 39205847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 37; Significance: 0.00000000003; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 206 - 307
Target Start/End: Original strand, 46348378 - 46348479
Alignment:
Q  206 gtgtccgacatcgacacatataattactccaaattatgtgannnnnnnaaattattagtagcgtcagcgtgtcagtgtccgtgtctgtatccgtgcttca 305  Q
    |||||||||| |||||| | ||||||| | ||||||| |||       ||||||||||  | ||| ||||||||||||||||||| ||||||||||||||    
T  46348378 gtgtccgacaccgacacttgtaattacactaaattatatgattttttcaaattattagctgtgtcggcgtgtcagtgtccgtgtccgtatccgtgcttca 46348477  T
Q  306 ta 307  Q
    ||    
T  46348478 ta 46348479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 169 - 215
Target Start/End: Complemental strand, 2218345 - 2218299
Alignment:
Q  169 atgaagcacgaacactcctcagattaggcgtgtactggtgtccgaca 215  Q
    |||||||||| |||||||||||||||||||||| || ||||| ||||    
T  2218345 atgaagcacggacactcctcagattaggcgtgtcctagtgtcggaca 2218299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 169 - 215
Target Start/End: Original strand, 16297223 - 16297269
Alignment:
Q  169 atgaagcacgaacactcctcagattaggcgtgtactggtgtccgaca 215  Q
    |||||||||| ||||||||| |||||||||||| |||||||| ||||    
T  16297223 atgaagcacggacactcctcggattaggcgtgtcctggtgtcggaca 16297269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 169 - 215
Target Start/End: Original strand, 46940750 - 46940796
Alignment:
Q  169 atgaagcacgaacactcctcagattaggcgtgtactggtgtccgaca 215  Q
    |||||||||||||||||||| |||||||||||| | |||||| ||||    
T  46940750 atgaagcacgaacactcctcggattaggcgtgttccggtgtcggaca 46940796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 254 - 303
Target Start/End: Original strand, 18556499 - 18556548
Alignment:
Q  254 aaattattagtagcgtcagcgtgtcagtgtccgtgtctgtatccgtgctt 303  Q
    ||||||||||  | ||| ||||||||||||||||||| ||||||||||||    
T  18556499 aaattattagctgtgtcggcgtgtcagtgtccgtgtccgtatccgtgctt 18556548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 169 - 210
Target Start/End: Original strand, 31694641 - 31694682
Alignment:
Q  169 atgaagcacgaacactcctcagattaggcgtgtactggtgtc 210  Q
    |||||||||| |||||||||||||||||||||| | ||||||    
T  31694641 atgaagcacggacactcctcagattaggcgtgttccggtgtc 31694682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 254 - 310
Target Start/End: Complemental strand, 37598848 - 37598791
Alignment:
Q  254 aaattattagtagcgtcagcgtgtcagtgtcc-gtgtctgtatccgtgcttcatagat 310  Q
    ||||||||||| | ||| |||||||||||||| |||||||| ||||||| ||||||||    
T  37598848 aaattattagttgtgtcggcgtgtcagtgtccggtgtctgtgtccgtgcgtcatagat 37598791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 35; Significance: 0.0000000004; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 169 - 215
Target Start/End: Original strand, 10535687 - 10535733
Alignment:
Q  169 atgaagcacgaacactcctcagattaggcgtgtactggtgtccgaca 215  Q
    |||||||||||||||||||| |||||||||||| |||||||| ||||    
T  10535687 atgaagcacgaacactcctcggattaggcgtgtcctggtgtcagaca 10535733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 254 - 308
Target Start/End: Complemental strand, 37558993 - 37558939
Alignment:
Q  254 aaattattagtagcgtcagcgtgtcagtgtccgtgtctgtatccgtgcttcatag 308  Q
    ||||||||||  | ||| ||||||||||||||||||| |||||||||||||||||    
T  37558993 aaattattagctgtgtcggcgtgtcagtgtccgtgtccgtatccgtgcttcatag 37558939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 278 - 308
Target Start/End: Original strand, 1886955 - 1886985
Alignment:
Q  278 cagtgtccgtgtctgtatccgtgcttcatag 308  Q
    |||||||||||||||||||||||||||||||    
T  1886955 cagtgtccgtgtctgtatccgtgcttcatag 1886985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 169 - 215
Target Start/End: Original strand, 11223795 - 11223841
Alignment:
Q  169 atgaagcacgaacactcctcagattaggcgtgtactggtgtccgaca 215  Q
    |||||||||| |||||||||||||||||||||| | |||||| ||||    
T  11223795 atgaagcacggacactcctcagattaggcgtgtcccggtgtcagaca 11223841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0190 (Bit Score: 32; Significance: 0.00000003; HSPs: 2)
Name: scaffold0190
Description:

Target: scaffold0190; HSP #1
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 586 - 657
Target Start/End: Original strand, 4319 - 4390
Alignment:
Q  586 caggatcatttcccattgcctccaaaatcttgtgaggaagacatacttgaaggtccatactaccttcttcta 657  Q
    ||||||||||||  |||||||||||||| |    |||||||||||||| ||||||||| ||||| |||||||    
T  4319 caggatcatttctaattgcctccaaaatttcacaaggaagacatacttcaaggtccatgctaccatcttcta 4390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0190; HSP #2
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 696 - 753
Target Start/End: Original strand, 4435 - 4492
Alignment:
Q  696 ccactgcgaactgccactggttttccccatccaaaattattgccataaacatcaaacc 753  Q
    ||||| |||||  |||| ||||||||||| ||||||| ||| ||||||||||||||||    
T  4435 ccacttcgaacccccacaggttttccccaaccaaaatcattaccataaacatcaaacc 4492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0004 (Bit Score: 32; Significance: 0.00000003; HSPs: 1)
Name: scaffold0004
Description:

Target: scaffold0004; HSP #1
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 169 - 216
Target Start/End: Complemental strand, 92939 - 92892
Alignment:
Q  169 atgaagcacgaacactcctcagattaggcgtgtactggtgtccgacat 216  Q
    |||||||||| ||||||||| |||||||||||| | ||||||||||||    
T  92939 atgaagcacggacactcctcggattaggcgtgtccaggtgtccgacat 92892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0793 (Bit Score: 31; Significance: 0.0000001; HSPs: 1)
Name: scaffold0793
Description:

Target: scaffold0793; HSP #1
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 280 - 310
Target Start/End: Original strand, 4964 - 4994
Alignment:
Q  280 gtgtccgtgtctgtatccgtgcttcatagat 310  Q
    |||||||||||||||||||||||||||||||    
T  4964 gtgtccgtgtctgtatccgtgcttcatagat 4994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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