View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2966-Insertion-11 (Length: 635)
Name: NF2966-Insertion-11
Description: NF2966
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2966-Insertion-11 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 348; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 348; E-Value: 0
Query Start/End: Original strand, 8 - 635
Target Start/End: Complemental strand, 27680982 - 27680367
Alignment:
| Q |
8 |
ccgtagacttgaactttgttcctacatgacatgatcaactcaaccagacaatcaccatctattctgattaattgttcaactagttgacaacatgaaaaaa |
107 |
Q |
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|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
27680982 |
ccgtagacttgaactttgctcctacatgacatgatcaactcaaccagacaatcaccatctattctgattaattgttcaacttgttgacaacatgaaaaaa |
27680883 |
T |
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| Q |
108 |
ccaaaacctttgtccctcatcccttgaatagatagagatagaatggcaaaagcttttggtgtcctctctcagagtcaagaattaggagtttacattgacc |
207 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||| |||||| |
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| T |
27680882 |
ccaaaacctttgtccctcatcccttgaatagatagagatagaatggcaaaagcttttagtgtcctctctc-gagtcaagaattaggagtttatattgact |
27680784 |
T |
|
| Q |
208 |
gatcaatatgcttataaagaaaaaatagcccataatgaaaag-nnnnnnnnngagttggtaatttaaatttaggataggctacaaggtagatgaatgnnn |
306 |
Q |
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||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
27680783 |
aatcaatatgcttataaagaaaaaatagcccataatgaaaagaaaaaaaaaagagttggtaatttaaatttagaataggctacaaggtagatgaatg--t |
27680686 |
T |
|
| Q |
307 |
nnnnnnngttaaccttatgatttttaagagaagagatctgataatttaaaattcggctgttagtatataatctagatgaatgannnnnnnnnnnnnnnga |
406 |
Q |
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||||||||| |||||||||||||||||||||| |||||||||||||||| ||| ||||||||||| |||||||||| || |
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| T |
27680685 |
tttttttgttaaccttctgatttttaagagaagagatctaataatttaaaattcggttgtaagtatataatccagatgaatga----tttttttttttga |
27680590 |
T |
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| Q |
407 |
agggtactaactaattagnnnnnnnnnnnngtcaaaaaactaatattccttgtaaaaaatttgaaattcatattacatnnnnnnnnnnnnnnnnttgaaa |
506 |
Q |
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| T |
27680589 |
agggtactaactaattag-----tttttttgtcaaaaaattaatattccttgtaaaaaatttgaaattcatattacat--aaaaaaaaaaaaaattgaaa |
27680497 |
T |
|
| Q |
507 |
tttaagtgagtag-ttaatttatttattccactactgttggtactggtgaccacaactattttctatttggaaaacatgacctgtcagaatcttgtcata |
605 |
Q |
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| T |
27680496 |
tttaagtgagtagtttaatttatttattccactactgttggtactggtgaccacaactattttctatttggaaaacatgacctgtcagaatcttgtcata |
27680397 |
T |
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| Q |
606 |
cttggtggaggcaatctttgtttagacata |
635 |
Q |
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| T |
27680396 |
cttggtggaggcaatctttgtttagacata |
27680367 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 72; Significance: 2e-32; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 10 - 220
Target Start/End: Original strand, 34660570 - 34660773
Alignment:
| Q |
10 |
gtagacttgaactttgttcctacatgacatgatcaactcaaccagacaatcaccatctattctgattaattgttcaactagttgacaacatgaaaaaacc |
109 |
Q |
| |
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|||||||||||| |||||| |||||||| ||||||| || | ||| ||||| ||||||||| ||||| |||||||| ||||||||||||||||||| |
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| T |
34660570 |
gtagacttgaaccttgttcttacatgacctgatcaattcgatcaggcaatcgccatctattttgatt----gttcaactctttgacaacatgaaaaaacc |
34660665 |
T |
|
| Q |
110 |
aaaacctttgtccctcatcccttgaatagatagagatagaatggcaaaagcttttggtgtcctctctcagagtcaagaattaggagtttacattgaccga |
209 |
Q |
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||||||| |||||| |||||||||||||| ||| ||| ||| |||| | || |||||||||||||| ||||||||||||||| | |||||||| |
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| T |
34660666 |
aaaacctctgtcccccatcccttgaatagctagggatggaaaggcagaggcctttggtgtcctctc---cagtcaagaattaggacctgacattgactag |
34660762 |
T |
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| Q |
210 |
tcaatatgctt |
220 |
Q |
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||||||||||| |
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| T |
34660763 |
tcaatatgctt |
34660773 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 39 - 138
Target Start/End: Original strand, 2234571 - 2234666
Alignment:
| Q |
39 |
tgatcaactcaaccagacaatcaccatctattctgattaattgttcaactagttgacaacatgaaaaaaccaaaacctttgtccctcatcccttgaatag |
138 |
Q |
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||||||| || | ||||||||| ||||||||| ||||| |||||||| |||||||||||||||||||||||||| |||||| |||||||||||||| |
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| T |
2234571 |
tgatcaattcgatcagacaatcgccatctattttgatt----gttcaactctttgacaacatgaaaaaaccaaaacctctgtcccccatcccttgaatag |
2234666 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 69; Significance: 1e-30; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 10 - 175
Target Start/End: Original strand, 21891140 - 21891301
Alignment:
| Q |
10 |
gtagacttgaactttgttcctacatgacatgatcaactcaaccagacaatcaccatctattctgattaattgttcaactagttgacaacatgaaaaaacc |
109 |
Q |
| |
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|||||||||||| |||||| |||||||| ||||||| || | ||| |||| ||||||||| ||||| |||||||| |||||||||| |||||||| |
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| T |
21891140 |
gtagacttgaaccttgttcttacatgacctgatcaattcgatcaggcaattgccatctattttgatt----gttcaactctttgacaacataaaaaaacc |
21891235 |
T |
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| Q |
110 |
aaaacctttgtccctcatcccttgaatagatagagatagaatggcaaaagcttttggtgtcctctc |
175 |
Q |
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|||||||||||||| |||||||||||||| ||||||| ||| |||| | || |||||||||||||| |
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| T |
21891236 |
aaaacctttgtcccccatcccttgaatagttagagatggaagggcagaggcctttggtgtcctctc |
21891301 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 64; Significance: 1e-27; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 10 - 220
Target Start/End: Original strand, 495569 - 495767
Alignment:
| Q |
10 |
gtagacttgaactttgttcctacatgacatgatcaactcaaccagacaatcaccatctattctgattaattgttcaactagttgacaacatgaaaaaacc |
109 |
Q |
| |
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|||||||||||| |||||| |||||||| ||||||| || | ||| ||||| ||||||||| ||||| |||||||| ||||||||||||||||||| |
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| T |
495569 |
gtagacttgaaccttgttcttacatgacctgatcaattcgatcaggcaatcgccatctattttgatt----gttcaactctttgacaacatgaaaaaacc |
495664 |
T |
|
| Q |
110 |
aaaacctttgtccctcatcccttgaatagatagagatagaatggcaaaagcttttggtgtcctctctcagagtcaagaattaggagtttacattgaccga |
209 |
Q |
| |
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||||||| |||||| |||||||||||||| ||| ||| |||| | || |||||||||||||| ||||||||||||||| | ||||||||| |
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| T |
495665 |
aaaacctctgtcccccatcccttgaatagctag-----gaagggcagaggcctttggtgtcctctc---cagtcaagaattaggacctgacattgaccag |
495756 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 10 - 220
Target Start/End: Original strand, 18193230 - 18193428
Alignment:
| Q |
10 |
gtagacttgaactttgttcctacatgacatgatcaactcaaccagacaatcaccatctattctgattaattgttcaactagttgacaacatgaaaaaacc |
109 |
Q |
| |
|
|||||||||||| |||||| |||||||| ||||||| || | ||| ||||| ||||||||| ||||| |||||||| ||||||||||||||||||| |
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| T |
18193230 |
gtagacttgaaccttgttcttacatgacctgatcaattcgatcaggcaatcgccatctattttgatt----gttcaactctttgacaacatgaaaaaacc |
18193325 |
T |
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| Q |
110 |
aaaacctttgtccctcatcccttgaatagatagagatagaatggcaaaagcttttggtgtcctctctcagagtcaagaattaggagtttacattgaccga |
209 |
Q |
| |
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||||||| |||||| |||||||||||||| ||| ||| |||| | || |||||||||||||| ||||||||||||||| | ||||||||| |
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| T |
18193326 |
aaaacctctgtcccccatcccttgaatagctag-----gaagggcagaggcctttggtgtcctctc---cagtcaagaattaggacctgacattgaccag |
18193417 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 10 - 220
Target Start/End: Complemental strand, 46151706 - 46151504
Alignment:
| Q |
10 |
gtagacttgaactttgttcctacatgacatgatcaactcaaccagacaatcaccatctattctgattaattgttcaactagttgacaacatgaaaaaacc |
109 |
Q |
| |
|
|||||||||||| || ||| |||||||| ||||||| || | ||| ||||| ||||||||| ||||| |||||||| |||||||||| |||||||| |
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| T |
46151706 |
gtagacttgaacctttttcttacatgacctgatcaattcgatcaggcaatcgccatctattttgatt----gttcaactctttgacaacat-aaaaaacc |
46151612 |
T |
|
| Q |
110 |
aaaacctttgtccctcatcccttgaatagatagagatagaatggcaaaagcttttggtgtcctctctcagagtcaagaattaggagtttacattgaccga |
209 |
Q |
| |
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||||| |||||||| |||||||||||||| ||| ||| ||| || ||| || |||||||||||||| ||||||||||||||| | |||| ||| | |
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| T |
46151611 |
aaaacatttgtcccccatcccttgaatagctagggatggaagggaaaatgcctttggtgtcctctc---cagtcaagaattaggacctgacatcgactaa |
46151515 |
T |
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| Q |
210 |
tcaatatgctt |
220 |
Q |
| |
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||||||||||| |
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| T |
46151514 |
tcaatatgctt |
46151504 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 78 - 138
Target Start/End: Original strand, 3171615 - 3171674
Alignment:
| Q |
78 |
attgttcaactagttgacaacatgaaaaaaccaaaacctttgtccctcatcccttgaatag |
138 |
Q |
| |
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||||||||||| |||||||||||||||| ||||||| |||||||| | |||||||||||| |
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| T |
3171615 |
attgttcaactctttgacaacatgaaaaatccaaaacttttgtccc-cgtcccttgaatag |
3171674 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 64; Significance: 1e-27; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 10 - 138
Target Start/End: Complemental strand, 48919939 - 48919815
Alignment:
| Q |
10 |
gtagacttgaactttgttcctacatgacatgatcaactcaaccagacaatcaccatctattctgattaattgttcaactagttgacaacatgaaaaaacc |
109 |
Q |
| |
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|||||||||||| |||||| |||||||| ||||||| || | ||| ||||||||||||||| ||||| |||||||| ||||||||||||||||||| |
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| T |
48919939 |
gtagacttgaaccttgttcttacatgacctgatcaattcgatcaggcaatcaccatctattttgatt----gttcaactctttgacaacatgaaaaaacc |
48919844 |
T |
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| Q |
110 |
aaaacctttgtccctcatcccttgaatag |
138 |
Q |
| |
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||||||| |||||| |||||||||||||| |
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| T |
48919843 |
aaaacctctgtcccccatcccttgaatag |
48919815 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 36; Significance: 0.00000000006; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 91 - 138
Target Start/End: Original strand, 21351936 - 21351982
Alignment:
| Q |
91 |
ttgacaacatgaaaaaaccaaaacctttgtccctcatcccttgaatag |
138 |
Q |
| |
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|||||||||||||||||||||||||| |||||| |||||||||||||| |
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| T |
21351936 |
ttgacaacatgaaaaaaccaaaacctctgtccc-catcccttgaatag |
21351982 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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