View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2966-Insertion-12 (Length: 602)
Name: NF2966-Insertion-12
Description: NF2966
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2966-Insertion-12 |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 427; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 427; E-Value: 0
Query Start/End: Original strand, 8 - 602
Target Start/End: Complemental strand, 28129531 - 28128936
Alignment:
| Q |
8 |
aaaagctggtgtgtatgccccaattacatggttacnnnnnnnnnnnnnnnnntttcatgacaccaagttatgtactacgaagtattgatatagatacaaa |
107 |
Q |
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| T |
28129531 |
aaaagctggtgtgtatgccccaattacatggttacaaaaaagatataaaaaatttcatgacaccaagttatgtactatgaagtattgatatagatacaaa |
28129432 |
T |
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| Q |
108 |
ccctatacaccacactaacaataattatttnnnnnnngaagtaattgaatttaactacatgtgttgagtcggacactgatagatgtcgaacaatggacac |
207 |
Q |
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| T |
28129431 |
ccctagacaccacactaacaataattatttaaaaaaaaaagtaattaaatttaaatacatgtgccgagtcggacactgatagatgtccaacaatggacac |
28129332 |
T |
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| Q |
208 |
actcacacactatctatctgaagtgtccatgatatactacatatat--gtatagtaaagaagaagtggaagaacttaagtccctcnnnnnnnnnnggtag |
305 |
Q |
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| T |
28129331 |
actcacacaatatctatctgaagtgtccatgatatactacatatatatgtatagtaaagaagaagtagaagaacttaagtctctcaaaaaaaaa-ggtag |
28129233 |
T |
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| Q |
306 |
aagaacttaatgaagttgtatataaaaatcggcttaaaaatagaatgtaatttcagagtgacacaaatgacatttgtgatatgctaactttgatattggt |
405 |
Q |
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| T |
28129232 |
aagaacttaatgaagttgtatataaaaatcggcttaaaaatagaatgtaatttcagagtgacacaaatgacatttgtgatatgctaactttgatattggt |
28129133 |
T |
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| Q |
406 |
tgatttttaatttaagtatagtattactgattagtaacatgttattgcagaatccttatgtggagtctaagagtccatgtgggtctagctttagatctgc |
505 |
Q |
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| T |
28129132 |
tgatttttaatttaagtatagtattactgattagtaacatgttattgcagaatccttatgtggagtctaagagtccatgtgggtctagctttggatctgc |
28129033 |
T |
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| Q |
506 |
aatttcagtggcaacaaacatggttacagtttcattagggacagaaactgatggctccatcatctgtccagctgatcacaattcagtagtgggaatc |
602 |
Q |
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| T |
28129032 |
aatttcagtggcaacaaacatggttacagtttcattagggacagaaactgatggctccattatctgtccagctgatcacaattcagtagtgggaatc |
28128936 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 451 - 598
Target Start/End: Complemental strand, 28110580 - 28110433
Alignment:
| Q |
451 |
tgcagaatccttatgtggagtctaagagtccatgtgggtctagctttagatctgcaatttcagtggcaacaaacatggttacagtttcattagggacaga |
550 |
Q |
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| T |
28110580 |
tgcagaacccttatgtggaatccgaaagtccatgcacgtctagctttggataagccatttcagtggcaactaacatggttgcagtttctttggggacaga |
28110481 |
T |
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| Q |
551 |
aactgatggctccatcatctgtccagctgatcacaattcagtagtggg |
598 |
Q |
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| T |
28110480 |
aactcatggctccattatctgtccagctgatcacaactcagtagtggg |
28110433 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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