View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2966-Insertion-13 (Length: 620)
Name: NF2966-Insertion-13
Description: NF2966
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2966-Insertion-13 |
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Alignment Details
Target: chr7 (Bit Score: 302; Significance: 1e-169; HSPs: 7)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 302; E-Value: 1e-169
Query Start/End: Original strand, 8 - 333
Target Start/End: Original strand, 28953209 - 28953534
Alignment:
| Q |
8 |
gattgaagctttgataaggaaatggttacaaatatgcactcagaaggatctagaagatcttgagttgcatttttaccaacctggtttcacagttgatttt |
107 |
Q |
| |
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||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28953209 |
gattgaagctttggtaaggaaatggttacaaatatgcactaagaaggatctagaagatcttgagttgcatttttaccaacctggtttcacagttgatttt |
28953308 |
T |
|
| Q |
108 |
aatgttttaaatgcactacccaagttaaaaacactgaaattggttaaatgtgtgatccagtgtccaaacgttcccaatggcttgcgatttctgcaaacgt |
207 |
Q |
| |
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|||||||| ||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
28953309 |
aatgtttttaatgcactatccaagttaaaaacactgaaattggttaaatgtgcgatccagtgtccaaacgttcccaatggcttgcaatttctgcaaacgt |
28953408 |
T |
|
| Q |
208 |
taagtctatgtaacctccacatgactaaagatatgtttgatgtattgattaagcattgtaaaatgcttaaatctattgatttgattaattgctccacaat |
307 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28953409 |
taagtctatgtaacctccacatgactaaagatatgtttgatgtattgattaagcattgtaaaatgcttaaatctattgatttgattaattgctccacaat |
28953508 |
T |
|
| Q |
308 |
taagaaattgaacttaattgctagag |
333 |
Q |
| |
|
|||||||||||||||||||||||||| |
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| T |
28953509 |
taagaaattgaacttaattgctagag |
28953534 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 255; E-Value: 1e-141
Query Start/End: Original strand, 362 - 620
Target Start/End: Original strand, 28953563 - 28953821
Alignment:
| Q |
362 |
tgtagactgtcgagatttgaaagagattgaaattgattcaccaactcttcattcaattttttatcatggaaaattttcaatagttcgaattattcaaggg |
461 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28953563 |
tgtagactgtcgagatttgaaagagattgaaattgattcaccaactcttcattcaattttttatcatggaaaattttcaatagttcgaattattcaaggg |
28953662 |
T |
|
| Q |
462 |
atgcaattgtatgaagctttcttttactttataccttcccaaaactacatcaagtttgatcatttggaagctctagtcaaagatctctctcatgtctccg |
561 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28953663 |
atgcaattgtatgaagctttcttttactttataccttcccaaaactacatgaagtttgatcatttggaagctctagtcaaagatctctctcatgtctccg |
28953762 |
T |
|
| Q |
562 |
ttctcaccactacacctctacttattgaggtatattcttaatctactttgatttacatt |
620 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28953763 |
ttctcaccactacacctctacttattgaggtatattcttaatctactttgatttacatt |
28953821 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 55 - 333
Target Start/End: Original strand, 28839291 - 28839569
Alignment:
| Q |
55 |
atctagaagatcttgagttgcatttttaccaacctggtttcacagttgattttaatgttttaaatgcactacccaagttaaaaacactgaaattggttaa |
154 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||||| ||||| |||| |||||| || ||||| | ||| ||||||||||| ||||| ||||| |
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| T |
28839291 |
atctagaagatcttgagttgcatctttaccaacctggtttcacggttgaatttagtgtttttaacgcacttcacaaattaaaaacactaaaattagttaa |
28839390 |
T |
|
| Q |
155 |
atgtgtgatccagtgtccaaacgttcccaatggcttgcgatttctgcaaacgttaagtctatgtaacctccacatgactaaagatatgtttgatgtattg |
254 |
Q |
| |
|
|||| || |||| | ||||| | ||| |||| |||||||||||| ||||||| ||||||||||| || || |||||||||||||||| ||| |
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| T |
28839391 |
ttgtgcaattcagttaatcgaggttccgagtggtttgcaatttctgcaaacactaagtctgtgtaacctccatattaccgaagatatgtttgatgtgttg |
28839490 |
T |
|
| Q |
255 |
attaagcattgtaaaatgcttaaatctattgatttgattaattgctccacaattaagaaattgaacttaattgctagag |
333 |
Q |
| |
|
||| ||||||||||||||||| || ||||||||||||||| ||||| |||||||| || | ||||||| |||||||| |
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|
| T |
28839491 |
attgagcattgtaaaatgcttgaaattattgatttgattaaatgctctacaattaataatctcaacttaaatgctagag |
28839569 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 93; E-Value: 6e-45
Query Start/End: Original strand, 385 - 593
Target Start/End: Original strand, 28839621 - 28839829
Alignment:
| Q |
385 |
agattgaaattgattcaccaactcttcattcaattttttatcatggaaaattttcaatagttcgaattattcaagggatgcaattgtatgaagctttctt |
484 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||||||||||| |||| | ||||||||| | |||||||| |||||||||| |||||||| |
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|
| T |
28839621 |
agattgaaattgattcaccaactcttcgttcaattttttatcatggaaatttttgtactgttcgaattgctgaagggatgaaattgtatgaggctttctt |
28839720 |
T |
|
| Q |
485 |
ttactttataccttcccaaaactacatcaagtttgatcatttggaagctctagtcaaagatctctctcatgtctccgttctcaccactacacctctactt |
584 |
Q |
| |
|
|||||||||||| ||| | ||||||| | | || |||||||||||||||||||||||||| |||| ||| ||||||| ||||||||||||||| |
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| T |
28839721 |
ttactttataccatccacacactacattcaatccactccgctggaagctctagtcaaagatctctctaatgtttccattctcacaactacacctctactt |
28839820 |
T |
|
| Q |
585 |
attgaggta |
593 |
Q |
| |
|
||||||||| |
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|
| T |
28839821 |
attgaggta |
28839829 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 29 - 332
Target Start/End: Complemental strand, 16903578 - 16903275
Alignment:
| Q |
29 |
atggttacaaatatgcactcagaaggatctagaagatcttgagttgcatttttaccaacctggtttcacagttgattttaatgttttaaatgcactaccc |
128 |
Q |
| |
|
|||||| |||||||||||| |||| |||||||| ||||||||| || |||||||||||||||||||||| |||| | || |||||| | ||||| | | |
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|
| T |
16903578 |
atggttgcaaatatgcactaagaaagatctagaggatcttgagctgtctttttaccaacctggtttcacaattgaatctactgtttttagcgcactgcac |
16903479 |
T |
|
| Q |
129 |
aagttaaaaacactgaaattggttaaatgtgtgatccagtgtccaaacgttcccaatggcttgcgatttctgcaaacgttaagtctatgtaacctccaca |
228 |
Q |
| |
|
|||||||||||| | ||||||| | ||||||||||| ||| ||| | ||||| | ||| |||| |||| |||||| | ||| ||| |||| |||||| |
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|
| T |
16903478 |
aagttaaaaacattaaaattggctcaatgtgtgatcgagttaccagaagttccaagtggtttgcaatttttgcaaaagctaaagctagctaacatccaca |
16903379 |
T |
|
| Q |
229 |
tgactaaagatatgtttgatgtattgattaagcattgtaaaatgcttaaatctattgatttgattaattgctccacaattaagaaattgaacttaattgc |
328 |
Q |
| |
|
| ||| || | |||| || | | |||||| |||||||||| |||||| || |||| ||| ||||||||||| ||||||||||||||||| |||||||| |
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|
| T |
16903378 |
tcactgaaaaaatgtctggtatgttgattgagcattgtaagatgcttgaaatgattgttttaattaattgctctacaattaagaaattgaaattaattgc |
16903279 |
T |
|
| Q |
329 |
taga |
332 |
Q |
| |
|
|||| |
|
|
| T |
16903278 |
taga |
16903275 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 378 - 596
Target Start/End: Complemental strand, 16903229 - 16903011
Alignment:
| Q |
378 |
ttgaaagagattgaaattgattcaccaactcttcattcaattttttatcatggaaaattttcaatagttcgaattattcaagggatgcaattgtatgaag |
477 |
Q |
| |
|
||||||||||||||||| ||||||||||||||| ||| ||||||||||||||||||||| |||| |||||||| |||||||||||||||||| || | |
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|
| T |
16903229 |
ttgaaagagattgaaatcgattcaccaactcttagttccattttttatcatggaaaatttccaattattcgaattgctcaagggatgcaattgtacgatg |
16903130 |
T |
|
| Q |
478 |
ctttcttttactttataccttcccaaaactacatcaagtttgatcatttggaagctctagtcaaagatctctctcatgtctccgttctcaccactacacc |
577 |
Q |
| |
|
|||| ||| ||||| ||| || | | ||||| | | | ||| | |||||||| | ||||||| ||| |||||| | |||||||||||||||| |
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|
| T |
16903129 |
ctttatttcgctttacaccatcaagagaatacatgcaatctactcagctagaagctcttgccaaagatttcttacatgtcagcattctcaccactacacc |
16903030 |
T |
|
| Q |
578 |
tctacttattgaggtatat |
596 |
Q |
| |
|
|| |||||||||||||||| |
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|
| T |
16903029 |
tcaacttattgaggtatat |
16903011 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 13 - 166
Target Start/End: Original strand, 32405749 - 32405889
Alignment:
| Q |
13 |
aagctttgataaggaaatggttacaaatatgcactcagaaggatctagaagatcttgagttgcatttttaccaacctggtttcacagttgattttaatgt |
112 |
Q |
| |
|
|||||||||| | || ||||||||||||||||||||| ||| |||||||||||||||||||||| | ||||| |||||| |||||||| |
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| T |
32405749 |
aagctttgattaagagatggttacaaatatgcactcaaaag---------gatcttgagttgcatttttaccga----gtttcgtagttgaatttaatgt |
32405835 |
T |
|
| Q |
113 |
tttaaatgcactacccaagttaaaaacactgaaattggttaaatgtgtgatcca |
166 |
Q |
| |
|
||| || || | | |||||||||||||| ||||||||| ||||| ||||||| |
|
|
| T |
32405836 |
ttttaacacattgcataagttaaaaacactaaaattggttcaatgtatgatcca |
32405889 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 121; Significance: 1e-61; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 121; E-Value: 1e-61
Query Start/End: Original strand, 373 - 596
Target Start/End: Original strand, 35449004 - 35449227
Alignment:
| Q |
373 |
gagatttgaaagagattgaaattgattcaccaactcttcattcaattttttatcatggaaaattttcaatagttcgaattattcaagggatgcaattgta |
472 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||| ||||||||||||| ||||| |
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| T |
35449004 |
gagatttgaaagagattgaaattgattcaccaactcttcattcaattttttatcatggaaaattttcaacaattcgaattgttcaagggatgcagttgta |
35449103 |
T |
|
| Q |
473 |
tgaagctttcttttactttataccttcccaaaactacat-caagtttgatcatttggaagctctagtcaaagatctctctcatgtctccgttctcaccac |
571 |
Q |
| |
|
||| |||||||||||||||| ||||||| |||| ||||| ||| | | | ||||||||||||||||||||||||||||||||||| |||| |||| |
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|
| T |
35449104 |
tgaggctttcttttactttacaccttccaaaaagtacatacaacctag-tatggtggaagctctagtcaaagatctctctcatgtctccattcttaccat |
35449202 |
T |
|
| Q |
572 |
tacacctctacttattgaggtatat |
596 |
Q |
| |
|
|||||| | |||||||||||||| |
|
|
| T |
35449203 |
cacacctgtgattattgaggtatat |
35449227 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 115; E-Value: 4e-58
Query Start/End: Original strand, 27 - 333
Target Start/End: Original strand, 35448658 - 35448964
Alignment:
| Q |
27 |
aaatggttacaaatatgcactcagaaggatctagaagatcttgagttgcatttttaccaacctggtttcacagttgattttaatgttttaaatgcactac |
126 |
Q |
| |
|
|||||| | ||||||||||| || ||||||||||||||||||||||||||||||| || |||| |||||||| | || | || |||||| || ||||||| |
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|
| T |
35448658 |
aaatggctgcaaatatgcacccaaaaggatctagaagatcttgagttgcattttttcctacctagtttcacaatagaatctagtgtttttaacgcactac |
35448757 |
T |
|
| Q |
127 |
ccaagttaaaaacactgaaattggttaaatgtgtgatccagtgtccaaacgttcccaatggcttgcgatttctgcaaacgttaagtctatgtaacctcca |
226 |
Q |
| |
|
||||||||||||||| |||||| |||||||| ||| |||| ||| | |||| | |||||||| ||||||||| || ||||||| ||||| |||| |
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|
| T |
35448758 |
acaagttaaaaacactaaaattgattaaatgtaagattcagttgccagaggttcttagtggcttgcaatttctgcatactctaagtctgtgtaagctccc |
35448857 |
T |
|
| Q |
227 |
catgactaaagatatgtttgatgtattgattaagcattgtaaaatgcttaaatctattgatttgattaattgctccacaattaagaaattgaacttaatt |
326 |
Q |
| |
|
||| ||| ||| ||||||| ||| ||||| ||||||||||||||||| || ||||||||||||||| ||||| |||||||||||| ||||||||||| |
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|
| T |
35448858 |
catcactgaaggtatgtttcatgcgctgattgagcattgtaaaatgcttgaaagtattgatttgattaaatgctctacaattaagaaactgaacttaatt |
35448957 |
T |
|
| Q |
327 |
gctagag |
333 |
Q |
| |
|
||||||| |
|
|
| T |
35448958 |
gctagag |
35448964 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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