View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2966-Insertion-15 (Length: 594)
Name: NF2966-Insertion-15
Description: NF2966
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2966-Insertion-15 |
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Alignment Details
Target: chr3 (Bit Score: 187; Significance: 1e-101; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 2 - 196
Target Start/End: Original strand, 1704226 - 1704420
Alignment:
| Q |
2 |
ccaacaacttctgcagttaccttttgtatcaaggttattacacgccttgatgaacaacaatgtttcaagagggaattgtttccttggtgtttgattgcca |
101 |
Q |
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| T |
1704226 |
ccaataacttctgcagttaccttttgtatcaaggttattacacgccttgatgaacaacaatgtttcaagagggaattgtttccttggtgtttgattgcca |
1704325 |
T |
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| Q |
102 |
ttgatgctatatattttctcaactcacatgtagttggagagataggtgcattgtgtgtgtctatgtgtatatatagatataagaagaagaagaag |
196 |
Q |
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| T |
1704326 |
ttgatgctatatattttctcaactcacatgtagttggagagataggtgcattgtgtgtgtctatgtgtatatatagacataagaagaagaagaag |
1704420 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 186; E-Value: 1e-100
Query Start/End: Original strand, 254 - 563
Target Start/End: Original strand, 1704481 - 1704793
Alignment:
| Q |
254 |
taggtcatttggag--ggagtgatataagagataaggtgatgtctatgttcgactactctactaacattcattataaatt-atttgtcnnnnnnnnnnnn |
350 |
Q |
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| T |
1704481 |
taggtcatttggagagggagtgatataagagataaggtgatgtctatgttcgactactctactaacattcattataaatttatttgtcaaaataaaaata |
1704580 |
T |
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| Q |
351 |
nnnnnctcattataaattttatataatcaattctttcnnnnnnnggtaatatcattatagccacttctacacatttattgttaaaacatagatattttta |
450 |
Q |
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| T |
1704581 |
aaaaattcattataaattttatataatcaattctttctttttttggtaatatcattatagctacttctacacatttatcgttaaaacatagatattttta |
1704680 |
T |
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| Q |
451 |
ttttgtgtgaagctcgtgtttttctaacttcaattttgtttaattcaaaaacgatttcgtgccctaatttctaacatatagttatattaaaagagtagtg |
550 |
Q |
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| T |
1704681 |
ttttgtgtgaagctcgtgtttttctaacttcaattttatttaattcaaaaacaatttcgtgccctaatttctaatgtataattctattaaaagagtagtg |
1704780 |
T |
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| Q |
551 |
tttgcttgaaaca |
563 |
Q |
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| T |
1704781 |
tttgcttgaaaca |
1704793 |
T |
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