View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2966-Insertion-16 (Length: 409)
Name: NF2966-Insertion-16
Description: NF2966
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2966-Insertion-16 |
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| [»] chr2 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 333; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 333; E-Value: 0
Query Start/End: Original strand, 37 - 409
Target Start/End: Complemental strand, 9161998 - 9161628
Alignment:
| Q |
37 |
aatatgtaatacccagtgattgattgtgttggaagatgccatgatgagtttggtatcaattatggtgagttgttgaccatttatgagtttgccattctcg |
136 |
Q |
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| T |
9161998 |
aatatgtaatacccagtgattgattgtgttggaagatgccatgatgagtttggtatcaattatggtgagttgttgaccattt--gagtttgccattctcg |
9161901 |
T |
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| Q |
137 |
acaaaagagattcagagtgttttattggagatggagatggtgttacactaatgcatttgcataaacagcttaaaccagttaatttcttgnnnnnnngcat |
236 |
Q |
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| T |
9161900 |
acaaaagagattcagagtgttttattggagatggagatggtgttacactaatgcatttgcataaacagcttaaaccagttaatttcttgaaaaaaagcat |
9161801 |
T |
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| Q |
237 |
gcagtttctacccctatacccacagtctctaatagtgcaaacctcctcgctttaagaagcataagaactgctcagagtcatggaatcatttcacaataga |
336 |
Q |
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| T |
9161800 |
gcagtttctacccctatacccacagtctctaatagtgcaaacctcctcgctttaagaagcataagaactgctcagagtcatggaatcatttcacaataga |
9161701 |
T |
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| Q |
337 |
catggaaaagaaatctgcatgcaactattgtgatggaaaatgaagtatgataatgcaactaattctatgtgtg |
409 |
Q |
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| T |
9161700 |
catagaaaagaaatctgcatgcaactattgtgatggaaaatgaagtatgataatgcaactagttctatgtgtg |
9161628 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 147 - 225
Target Start/End: Complemental strand, 9149078 - 9149001
Alignment:
| Q |
147 |
ttcagagtgttttattggagatggagatggtgttacactaatgcatttgcataaacagcttaaaccagttaatttcttg |
225 |
Q |
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| T |
9149078 |
ttcagagtgttgtattagacacggagatggtgttacactaatcca-ttgcatagacaacttataccagttaattccttg |
9149001 |
T |
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