View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2966-Insertion-17 (Length: 422)
Name: NF2966-Insertion-17
Description: NF2966
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2966-Insertion-17 |
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Alignment Details
Target: chr1 (Bit Score: 227; Significance: 1e-125; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 41 - 388
Target Start/End: Original strand, 195538 - 195907
Alignment:
| Q |
41 |
gtttgaaaatttcattcaaattacatctttccacatacaaagcagatgctaaattttgtactcctctatagattaaattagttttagttgaacggtgatc |
140 |
Q |
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| T |
195538 |
gtttgaaaatttcactcaaattacatctttccacatacaaaggagatgctaaattttgtactcctctacaaactaaattagttttagttgaacggtgatc |
195637 |
T |
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| Q |
141 |
aa----------------------caagatctttgttggaaccaaattgttccaagtagctctatacaccaggaaatccgctacaactttactttaaaat |
218 |
Q |
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| T |
195638 |
aattagtagtctccacgcaatcaacaaaatctttgttggaaccaaattgttccaagtagctctattcaccgagaaatccactacaactttactttaaaat |
195737 |
T |
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| Q |
219 |
tagatagcaacacacaaacttcttttacgaaacacatatcggcaaaataagggtttcaaatccatatatatttcacattaccttgcaaggtaaggttaga |
318 |
Q |
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| T |
195738 |
tagatagcaacacacaaacttcttttataaaacacatatcggcaaaataagggttccaaacccatatatattccacattaccttgcaaagtaaggttaga |
195837 |
T |
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| Q |
319 |
tagtaaagtcctacactccttcattagctctacctctaggcaaacaagtttattctccagcttcaacatc |
388 |
Q |
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| T |
195838 |
tagtaaagtcctacactccttcattagctctacctccaggcaaacaagtttattctccaacttcaacatc |
195907 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 388 - 422
Target Start/End: Original strand, 195882 - 195916
Alignment:
| Q |
388 |
caagtttattctccaacttcaacatcctcccctct |
422 |
Q |
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| T |
195882 |
caagtttattctccaacttcaacatcctcccctct |
195916 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 49 - 97
Target Start/End: Original strand, 5522544 - 5522592
Alignment:
| Q |
49 |
atttcattcaaattacatctttccacatacaaagcagatgctaaatttt |
97 |
Q |
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| T |
5522544 |
atttcattcaaattacatcatttcatatataaaggagatgctaaatttt |
5522592 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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