View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2966-Insertion-20 (Length: 434)
Name: NF2966-Insertion-20
Description: NF2966
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2966-Insertion-20 |
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Alignment Details
Target: chr1 (Bit Score: 192; Significance: 1e-104; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 7 - 264
Target Start/End: Original strand, 45469164 - 45469418
Alignment:
| Q |
7 |
acaaacttggtgtgttattcagatttgaaaacagccattaatttaatctttgcgacggttaatgattgacaccattatgccttgatcatttggaataatc |
106 |
Q |
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| T |
45469164 |
acaaacttggtgtgttattcagatttgaaaacaaccattaatttaatctttgcgacggttaatgattgacaccattatgccctgattattcggaatattc |
45469263 |
T |
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| Q |
107 |
aggagctcatggcaagggattgacaggttcgtgttttgcatactctaagagagagaaatgcgtgtgcagattatttagctaaatttggtgcagacagcca |
206 |
Q |
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| T |
45469264 |
aggagctcct---aagggattggcaggttcgtgttttgcatactctaagagagggaaatgcgtgtgcagattatttagctaaacttggtgcaggtagcca |
45469360 |
T |
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| Q |
207 |
tgagtctttctggtccatcgagtaccctcctactggaatcaacctgctcctactagct |
264 |
Q |
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| T |
45469361 |
tgagtctttctggtccatcaagtaccctcctgctggaatcaacctgctcctactagct |
45469418 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 357 - 434
Target Start/End: Original strand, 45469516 - 45469593
Alignment:
| Q |
357 |
catatttgcatatgtttggatccaagttgtaaagttgtaactcgagatctacttaaatggttgagctcgcataacata |
434 |
Q |
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| T |
45469516 |
catatctgcatatgtttggatctaagttgtaaagttgtaactcgagatctacttaaatggttgagcttgcataacata |
45469593 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 158; Significance: 6e-84; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 158; E-Value: 6e-84
Query Start/End: Original strand, 7 - 264
Target Start/End: Complemental strand, 49899209 - 49898952
Alignment:
| Q |
7 |
acaaacttggtgtgttattcagatttgaaaacagccattaatttaatctttgcgacggttaatgattgacaccattatgccttgatcatttggaataatc |
106 |
Q |
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| T |
49899209 |
acaaacttggtgtgttattcagattcgaaagcagccattaatttaatctttgcgacggttaatgattgacaccattatgccccgattattcggaatattc |
49899110 |
T |
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| Q |
107 |
aggagctcatggcaagggattgacaggttcgtgttttgcatactctaagagagagaaatgcgtgtgcagattatttagctaaatttggtgcagacagcca |
206 |
Q |
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|||||||| ||||||||||||| || |||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||| ||||| |
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| T |
49899109 |
aggagctcctggcaagggattggcaagttcgtgttttgcatactctaagagatggaaatgcgtgtgcagattatttagctaaacttggtgcaggaagcca |
49899010 |
T |
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| Q |
207 |
tgagtctttctggtccatcgagtaccctcctactggaatcaacctgctcctactagct |
264 |
Q |
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| T |
49899009 |
tgagtccttctaatccattgagcacccgcctgctgaaattaacccgctcctactagct |
49898952 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 124 - 183
Target Start/End: Original strand, 36373509 - 36373568
Alignment:
| Q |
124 |
gattgacaggttcgtgttttgcatactctaagagagagaaatgcgtgtgcagattattta |
183 |
Q |
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| T |
36373509 |
gattgacagattcgtgttttgcatactctaagggagggaaatgcgtgtgcagattattta |
36373568 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 66 - 154
Target Start/End: Original strand, 36373409 - 36373497
Alignment:
| Q |
66 |
taatgattgacaccattatgccttgatcatttggaataatcaggagctcatggcaagggattgacaggttcgtgttttgcatactctaa |
154 |
Q |
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| T |
36373409 |
taatcattgacaccattatgacccaattattcggaatattcaggagctcccggcaagggattgacagattcgtgttttgcatactctaa |
36373497 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 89; Significance: 9e-43; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 89; E-Value: 9e-43
Query Start/End: Original strand, 125 - 288
Target Start/End: Complemental strand, 9057255 - 9057092
Alignment:
| Q |
125 |
attgacaggttcgtgttttgcatactctaagagagagaaatgcgtgtgcagattatttagctaaatttggtgcagacagccatgagtctttctggtccat |
224 |
Q |
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|||| |||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||| ||| ||||| ||||||||||| ||||||||||| |
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| T |
9057255 |
attggcaggtttatgttttgcatactctaagagagggaaatgcgtgtgcagattatttagctaaacttgatgcagggagccatgagtccttctggtccat |
9057156 |
T |
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| Q |
225 |
cgagtaccctcctactggaatcaacctgct-cctactagctagtgggaccttcttttctagatag |
288 |
Q |
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| T |
9057155 |
cgagcacccgcctgctggaatcaacctgctagctgat-gctagtgggaccttcttttctagatag |
9057092 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 52; Significance: 1e-20; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 116 - 287
Target Start/End: Original strand, 35362301 - 35362480
Alignment:
| Q |
116 |
tggcaagggattgacaggttcgtgttttgcatactctaagagagagaaatgcgtgtgcagattatttagcta---aatttggtgcagacagccatgagtc |
212 |
Q |
| |
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||||||||||| | ||||||| ||||||| | |||||||| || ||||||||||| || |||||||||||| |||||||||||| |||| |||||| |
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| T |
35362301 |
tggcaagggatcggcaggttcatgttttgtacactctaaggaagggaaatgcgtgttcaaattatttagctaattaatttggtgcaggcagctttgagtc |
35362400 |
T |
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| Q |
213 |
tttctggtccatcgagtaccctcctactggaatcaacctgctcctactagc------tagtgggaccttcttttctagata |
287 |
Q |
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| T |
35362401 |
cttctgatccatcgagcatcc-catgctggaatcaacctactccgactagctgatgttagtgggaccttcttttctagata |
35362480 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 206 - 288
Target Start/End: Complemental strand, 7503553 - 7503465
Alignment:
| Q |
206 |
atgagtctttctggtccatcgagtaccctcctactggaatcaacctgctcctacta------gctagtgggaccttcttttctagatag |
288 |
Q |
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||||||| ||||||||||||||| |||| | | |||||||||| |||||||||||| ||||||||||||||||||||||||||| |
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| T |
7503553 |
atgagtccttctggtccatcgagcacccgcttgctggaatcaatctgctcctactagctgatgctagtgggaccttcttttctagatag |
7503465 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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