View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2966-Insertion-21 (Length: 468)

Name: NF2966-Insertion-21
Description: NF2966
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2966-Insertion-21
NF2966-Insertion-21
[»] chr5 (4 HSPs)
chr5 (8-211)||(40797519-40797722)
chr5 (234-370)||(40797405-40797528)
chr5 (162-211)||(41612842-41612891)
chr5 (398-427)||(40797353-40797382)
[»] chr6 (5 HSPs)
chr6 (8-194)||(8848894-8849080)
chr6 (166-211)||(23158121-23158166)
chr6 (166-211)||(18763106-18763151)
chr6 (166-211)||(20014730-20014775)
chr6 (160-211)||(31575107-31575158)
[»] scaffold0022 (1 HSPs)
scaffold0022 (7-211)||(152759-152963)
[»] chr7 (7 HSPs)
chr7 (7-211)||(39700514-39700719)
chr7 (246-291)||(6015836-6015881)
chr7 (160-211)||(27260683-27260734)
chr7 (160-211)||(45623325-45623376)
chr7 (166-211)||(9334209-9334255)
chr7 (214-247)||(45623307-45623340)
chr7 (160-211)||(26643043-26643095)
[»] chr4 (4 HSPs)
chr4 (110-211)||(43591268-43591368)
chr4 (160-211)||(581746-581797)
chr4 (162-211)||(581439-581488)
chr4 (214-247)||(43592211-43592244)
[»] chr2 (2 HSPs)
chr2 (139-207)||(28381778-28381846)
chr2 (248-288)||(5668242-5668282)
[»] chr8 (2 HSPs)
chr8 (148-211)||(22928113-22928177)
chr8 (248-281)||(11405927-11405960)
[»] chr3 (2 HSPs)
chr3 (155-206)||(22159166-22159218)
chr3 (160-211)||(6509911-6509962)
[»] chr1 (2 HSPs)
chr1 (246-281)||(12252568-12252603)
chr1 (147-211)||(15718776-15718841)


Alignment Details
Target: chr5 (Bit Score: 180; Significance: 5e-97; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 180; E-Value: 5e-97
Query Start/End: Original strand, 8 - 211
Target Start/End: Complemental strand, 40797722 - 40797519
Alignment:
Q  8 ttgatgatcgtaactcctctctttcgccctatttctctcagtcataaaagacatacggtttacagaagaaggatttgaggggagttttcaaactgatgtt 107  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||    
T  40797722 ttgatgatcgtaactcctctctttcgccctatttctctcagtcataaaagacatacggtttacagaagaaggatttgaagggagttttcaaactgttgtt 40797623  T
Q  108 cagttttaactggcaaattgggaaattctcataaaagaagaagggtaatttgggaaagaaaataggctacaccaaacaaaagttttctctttattaatag 207  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||| ||||||||||||||||||||||     
T  40797622 cagttttaactggcaaattgggaaattctcataaaagaagaagggtaatttgggaaagaaaataggctacgctaaataaaagttttctctttattaataa 40797523  T
Q  208 gtat 211  Q
    ||||    
T  40797522 gtat 40797519  T

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Target: chr5; HSP #2
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 234 - 370
Target Start/End: Complemental strand, 40797528 - 40797405
Alignment:
Q  234 taataggtatagatgataaacaactttgaccccacttattgaaatttcggaatccatcgttctggtactttctttgtactattgtttaaggagtttaatt 333  Q
    ||||| ||||||||||||||| ||||||||||||||||||||||||||||||||| ||             | |  ||||||||||||||||||||||||    
T  40797528 taataagtatagatgataaaccactttgaccccacttattgaaatttcggaatccgtc-------------cctgatactattgtttaaggagtttaatt 40797442  T
Q  334 agtgttggtgtttgagcatttgaccttttttgaaagg 370  Q
    |||||||||||||||||||||||||||||||||||||    
T  40797441 agtgttggtgtttgagcatttgaccttttttgaaagg 40797405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 162 - 211
Target Start/End: Complemental strand, 41612891 - 41612842
Alignment:
Q  162 aaagaaaataggctacaccaaacaaaagttttctctttattaataggtat 211  Q
    ||||||||||||||||||||||| ||||| ||  ||||||||||||||||    
T  41612891 aaagaaaataggctacaccaaaccaaagtattgcctttattaataggtat 41612842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 398 - 427
Target Start/End: Complemental strand, 40797382 - 40797353
Alignment:
Q  398 ggttattaatttattccattggatacttat 427  Q
    ||||||||||||||||||||||||||||||    
T  40797382 ggttattaatttattccattggatacttat 40797353  T

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Target: chr6 (Bit Score: 167; Significance: 3e-89; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 167; E-Value: 3e-89
Query Start/End: Original strand, 8 - 194
Target Start/End: Original strand, 8848894 - 8849080
Alignment:
Q  8 ttgatgatcgtaactcctctctttcgccctatttctctcagtcataaaagacatacggtttacagaagaaggatttgaggggagttttcaaactgatgtt 107  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||    
T  8848894 ttgatgatcgtaactcctctctttcgccctatttctctcagtcataaaagacatacggtttacaaaagaaggatttgaggggagttttcaaactgttgtt 8848993  T
Q  108 cagttttaactggcaaattgggaaattctcataaaagaagaagggtaatttgggaaagaaaataggctacaccaaacaaaagttttc 194  Q
    |||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||| |||||||||||||||||||||||||    
T  8848994 cagttttaactggcaaattgggaaattctcataaaaaaagaaggataatttgggaaagaaattaggctacaccaaacaaaagttttc 8849080  T

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Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 166 - 211
Target Start/End: Complemental strand, 23158166 - 23158121
Alignment:
Q  166 aaaataggctacaccaaacaaaagttttctctttattaataggtat 211  Q
    ||||||||||||||||||||||||| || |||||||||||||||||    
T  23158166 aaaataggctacaccaaacaaaagtattgtctttattaataggtat 23158121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 166 - 211
Target Start/End: Complemental strand, 18763151 - 18763106
Alignment:
Q  166 aaaataggctacaccaaacaaaagttttctctttattaataggtat 211  Q
    |||||||||||||||||||||||||  | |||||||||||||||||    
T  18763151 aaaataggctacaccaaacaaaagtactgtctttattaataggtat 18763106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 166 - 211
Target Start/End: Complemental strand, 20014775 - 20014730
Alignment:
Q  166 aaaataggctacaccaaacaaaagttttctctttattaataggtat 211  Q
    ||||||||||||||||||||||||| ||  ||||||||||||||||    
T  20014775 aaaataggctacaccaaacaaaagtattgcctttattaataggtat 20014730  T

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Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 160 - 211
Target Start/End: Original strand, 31575107 - 31575158
Alignment:
Q  160 ggaaagaaaataggctacaccaaacaaaagttttctctttattaataggtat 211  Q
    ||||||||||||||||||| ||||| ||||| ||  ||||||||||||||||    
T  31575107 ggaaagaaaataggctacatcaaaccaaagtattgcctttattaataggtat 31575158  T

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Target: scaffold0022 (Bit Score: 113; Significance: 5e-57; HSPs: 1)
Name: scaffold0022
Description:

Target: scaffold0022; HSP #1
Raw Score: 113; E-Value: 5e-57
Query Start/End: Original strand, 7 - 211
Target Start/End: Original strand, 152759 - 152963
Alignment:
Q  7 attgatgatcgtaactcctctctttcgccctatttctctcagtcataaaagacatacggtttacagaagaaggatttgaggggagttttcaaactgatgt 106  Q
    ||||||||||||||||||||||||||  |||||||||||| |||||||||||| | |||||||||  ||   || ||| ||||||||| ||||||| | |    
T  152759 attgatgatcgtaactcctctctttcaacctatttctctcggtcataaaagacttgcggtttacaacaggtagaattggggggagtttccaaactgtttt 152858  T
Q  107 tcagttttaactggcaaattgggaaattctcataaaagaagaagggtaatttgggaaagaaaataggctacaccaaacaaaagttttctctttattaata 206  Q
    ||| ||||||| ||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||| ||||||| |||||  |||||||||||    
T  152859 tcaattttaacgggcaaattgggaaattctcataaaaaaagaagggtaatttaggaaagaaaataggctacacgaaacaaatgttttgcctttattaata 152958  T
Q  207 ggtat 211  Q
    |||||    
T  152959 ggtat 152963  T

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Target: chr7 (Bit Score: 110; Significance: 3e-55; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 7 - 211
Target Start/End: Complemental strand, 39700719 - 39700514
Alignment:
Q  7 attgatgatcgtaactcc-tctctttcgccctatttctctcagtcataaaagacatacggtttacagaagaaggatttgaggggagttttcaaactgatg 105  Q
    |||||||||||||||||| ||||||||  |||||||||||| |||||||||||| | |||||||||  ||   || ||| ||||||||| ||||||| |     
T  39700719 attgatgatcgtaactccatctctttcaacctatttctctcggtcataaaagacttgcggtttacaacaggtagaattggggggagtttccaaactgttt 39700620  T
Q  106 ttcagttttaactggcaaattgggaaattctcataaaagaagaagggtaatttgggaaagaaaataggctacaccaaacaaaagttttctctttattaat 205  Q
    |||| |||| || ||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||  ||||||||||    
T  39700619 ttcaattttgacgggcaaattgggaaattctcataaaaaaagaagggtaatttaggaaagaaaataggctacaccaaacaaaagttttacctttattaat 39700520  T
Q  206 aggtat 211  Q
    ||||||    
T  39700519 aggtat 39700514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 246 - 291
Target Start/End: Original strand, 6015836 - 6015881
Alignment:
Q  246 atgataaacaactttgaccccacttattgaaatttcggaatccatc 291  Q
    ||||||||||| |||||||||||||||||||||||| | |||||||    
T  6015836 atgataaacaattttgaccccacttattgaaatttctggatccatc 6015881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 160 - 211
Target Start/End: Original strand, 27260683 - 27260734
Alignment:
Q  160 ggaaagaaaataggctacaccaaacaaaagttttctctttattaataggtat 211  Q
    ||||| ||||||||||||||||||   |||||||| ||||||||||||||||    
T  27260683 ggaaaaaaaataggctacaccaaaactaagttttccctttattaataggtat 27260734  T

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Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 160 - 211
Target Start/End: Complemental strand, 45623376 - 45623325
Alignment:
Q  160 ggaaagaaaataggctacaccaaacaaaagttttctctttattaataggtat 211  Q
    ||||||||||||||||||||||||  ||||| ||  ||||||||||||||||    
T  45623376 ggaaagaaaataggctacaccaaaagaaagtattgcctttattaataggtat 45623325  T

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Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 166 - 211
Target Start/End: Original strand, 9334209 - 9334255
Alignment:
Q  166 aaaataggctacaccaaacaaaa-gttttctctttattaataggtat 211  Q
    ||||||||||||||||||||||| |||||  ||||||||||||||||    
T  9334209 aaaataggctacaccaaacaaaatgttttgcctttattaataggtat 9334255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 214 - 247
Target Start/End: Complemental strand, 45623340 - 45623307
Alignment:
Q  214 ctttattaataggtatagaataataggtatagat 247  Q
    ||||||||||||||||||| ||||||||||||||    
T  45623340 ctttattaataggtatagattaataggtatagat 45623307  T

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Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 160 - 211
Target Start/End: Complemental strand, 26643095 - 26643043
Alignment:
Q  160 ggaaagaaaataggctacacc-aaacaaaagttttctctttattaataggtat 211  Q
    ||||||||||||||||||||| ||| |||||| ||  ||||||||||||||||    
T  26643095 ggaaagaaaataggctacaccaaaagaaaagtattgcctttattaataggtat 26643043  T

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Target: chr4 (Bit Score: 78; Significance: 4e-36; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 110 - 211
Target Start/End: Complemental strand, 43591368 - 43591268
Alignment:
Q  110 gttttaactggcaaattgggaaattctcataaaagaagaagggtaatttgggaaagaaaataggctacaccaaacaaaagttttctctttattaataggt 209  Q
    ||||||| ||||| ||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  43591368 gttttaattggcatattggaaaattctcataaaa-aagaagggtaatttgggaaagaaaataggctacaccaaacaaaagttttccctttattaataggt 43591270  T
Q  210 at 211  Q
    ||    
T  43591269 at 43591268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 160 - 211
Target Start/End: Complemental strand, 581797 - 581746
Alignment:
Q  160 ggaaagaaaataggctacaccaaacaaaagttttctctttattaataggtat 211  Q
    ||||||||||||||||||||||||  ||||| || |||||||||||||||||    
T  581797 ggaaagaaaataggctacaccaaattaaagtattgtctttattaataggtat 581746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 162 - 211
Target Start/End: Complemental strand, 581488 - 581439
Alignment:
Q  162 aaagaaaataggctacaccaaacaaaagttttctctttattaataggtat 211  Q
    ||||||||||||||||||||||| ||||| ||  ||||||||||||||||    
T  581488 aaagaaaataggctacaccaaactaaagtattgcctttattaataggtat 581439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 214 - 247
Target Start/End: Complemental strand, 43592244 - 43592211
Alignment:
Q  214 ctttattaataggtatagaataataggtatagat 247  Q
    ||||||||||||||||||| ||||||||||||||    
T  43592244 ctttattaataggtatagattaataggtatagat 43592211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 37; Significance: 0.00000000001; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 139 - 207
Target Start/End: Complemental strand, 28381846 - 28381778
Alignment:
Q  139 taaaagaagaagggtaatttgggaaagaaaataggctacaccaaacaaaagttttctctttattaatag 207  Q
    |||||||| ||||||||  ||||||||||| ||||||||||||||   |||||||| ||||||||||||    
T  28381846 taaaagaataagggtaaaatgggaaagaaagtaggctacaccaaaactaagttttccctttattaatag 28381778  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 248 - 288
Target Start/End: Original strand, 5668242 - 5668282
Alignment:
Q  248 gataaacaactttgaccccacttattgaaatttcggaatcc 288  Q
    |||||||||  ||||||||||||||||||||||| ||||||    
T  5668242 gataaacaatattgaccccacttattgaaatttctgaatcc 5668282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 33; Significance: 0.000000003; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 148 - 211
Target Start/End: Complemental strand, 22928177 - 22928113
Alignment:
Q  148 aagggtaatttgggaaag-aaaataggctacaccaaacaaaagttttctctttattaataggtat 211  Q
    ||||||||||| |||| | |||| ||||||||||||||| | ||||| |||||||||||||||||    
T  22928177 aagggtaattttggaatggaaaaaaggctacaccaaacacatgttttgtctttattaataggtat 22928113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 248 - 281
Target Start/End: Original strand, 11405927 - 11405960
Alignment:
Q  248 gataaacaactttgaccccacttattgaaatttc 281  Q
    |||||| |||||||||||||||||||||||||||    
T  11405927 gataaataactttgaccccacttattgaaatttc 11405960  T

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Target: chr3 (Bit Score: 33; Significance: 0.000000003; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 155 - 206
Target Start/End: Original strand, 22159166 - 22159218
Alignment:
Q  155 atttgggaaagaaaataggctacaccaaacaaaa-gttttctctttattaata 206  Q
    |||||||||| ||||||||||||||||||||||| |||||  |||||||||||    
T  22159166 atttgggaaaaaaaataggctacaccaaacaaaatgttttgcctttattaata 22159218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 160 - 211
Target Start/End: Original strand, 6509911 - 6509962
Alignment:
Q  160 ggaaagaaaataggctacaccaaacaaaagttttctctttattaataggtat 211  Q
    ||||||||||||||||| ||||||| ||||| ||  ||||||||||||||||    
T  6509911 ggaaagaaaataggctataccaaaccaaagtattggctttattaataggtat 6509962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 246 - 281
Target Start/End: Original strand, 12252568 - 12252603
Alignment:
Q  246 atgataaacaactttgaccccacttattgaaatttc 281  Q
    ||||||||||| ||||||||||||||||||||||||    
T  12252568 atgataaacaattttgaccccacttattgaaatttc 12252603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 147 - 211
Target Start/End: Complemental strand, 15718841 - 15718776
Alignment:
Q  147 gaagggtaatttgggaa-agaaaataggctacaccaaacaaaagttttctctttattaataggtat 211  Q
    ||||||||||||||||| |||||||| |||||||||||  || || ||  ||||||||||||||||    
T  15718841 gaagggtaatttgggaatagaaaatatgctacaccaaagtaatgtattgcctttattaataggtat 15718776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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