View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2966-Insertion-22 (Length: 486)
Name: NF2966-Insertion-22
Description: NF2966
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2966-Insertion-22 |
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| [»] chr2 (4 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 377; Significance: 0; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 377; E-Value: 0
Query Start/End: Original strand, 13 - 486
Target Start/End: Complemental strand, 31705774 - 31705301
Alignment:
| Q |
13 |
ttggtgatatgccttgctgtcatgaaatcagatataacgaaacaatttaccgaacttcaaacatgtatatctgataaacttcattaaaatttgtttttca |
112 |
Q |
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| T |
31705774 |
ttggggatatgccttgctgtcatgaaatcagatataacgaaacatttaaccgaacttcaaacatgtatatctgataaacttcataaaaatttgtttttca |
31705675 |
T |
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| Q |
113 |
agaactaagatagatccaaattgttannnnnnnnnnatcaataatatggatcttgtatctaaatactcaaatttgtgacaataagagcctcstattgaag |
212 |
Q |
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| T |
31705674 |
agaactaagataggtccaaattgatatattttttttatcaataatatggatctagtatctaaatactcaaatttgtgacaataagagcctcgtattgaaa |
31705575 |
T |
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| Q |
213 |
aataacttattgattatatttactcacaacatgattttgcatgacaagacaatctgtactcaacttctttaacaactctggaggaaatctgcaggnnnnn |
312 |
Q |
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| T |
31705574 |
aataacttattgattatatttactcacaacatgattttgcatgacaagacaatctgtactcaacttctttaacaactctggaggaaatctgcaggaaaaa |
31705475 |
T |
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| Q |
313 |
nngtgattaataactttgcatattaaattcagtgacaaagaacctataaatttaacactgttgaatgattaaaagtttcagaatataagttgcatggaag |
412 |
Q |
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| T |
31705474 |
aagtgattaataactttgcatattaaattcagtgacaaagaacctataaatttaacacttttgaatgattaaaagtttcagaatataagttgcatggaag |
31705375 |
T |
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| Q |
413 |
aggaagaaaaattcttgtataaacacaggcttctcagaatatattagattatctcattgttactcccgtcccgg |
486 |
Q |
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| T |
31705374 |
aggaagaaaaattcttgtataaacacaggcttctcagactatattagattatgtcattgttactcccgtcccgg |
31705301 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 243 - 307
Target Start/End: Complemental strand, 31701517 - 31701453
Alignment:
| Q |
243 |
atgattttgcatgacaagacaatctgtactcaacttctttaacaactctggaggaaatctgcagg |
307 |
Q |
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| T |
31701517 |
atgattttgcatgacaatacaatctgtactcaacttctttaacaagtctggaggaaatctgcagg |
31701453 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 227 - 306
Target Start/End: Complemental strand, 31690247 - 31690168
Alignment:
| Q |
227 |
tatatttactcacaacatgattttgcatgacaagacaatctgtactcaacttctttaacaactctggaggaaatctgcag |
306 |
Q |
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| T |
31690247 |
tatatgtactcacacgatgattttgcatgacaagacaatctgtactcagcttctttaataaatctggaggaaatctgcag |
31690168 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 233 - 307
Target Start/End: Complemental strand, 31683157 - 31683083
Alignment:
| Q |
233 |
tactcacaacatgattttgcatgacaagacaatctgtactcaacttctttaacaactctggaggaaatctgcagg |
307 |
Q |
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| T |
31683157 |
tactcacacgatgattttgcatgataagacaatctgtactcaacttctttaacaagtctggaggaaacctgcagg |
31683083 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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