View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2966-Insertion-23 (Length: 494)
Name: NF2966-Insertion-23
Description: NF2966
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2966-Insertion-23 |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 318; Significance: 1e-179; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 318; E-Value: 1e-179
Query Start/End: Original strand, 161 - 494
Target Start/End: Complemental strand, 7256656 - 7256323
Alignment:
| Q |
161 |
tagtttacctttaatcaaaataatatcctaacctgtatcagcgagtatttaagtaagatcttgttaacaaatgccctaaatcactctttaaggattctaa |
260 |
Q |
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| T |
7256656 |
tagtttagctttaatcaaaataatatcctaaccggtatcagcgagtatttaagtaaggtcttgttaataaatgccctaaatcactctttaaggattctaa |
7256557 |
T |
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| Q |
261 |
atgaaaaaaccactcattaacgaaatcacagtgaaccaccacattttgacaaaaaccatacttaatttaaaatttcaacacaatgattttatcagcgtca |
360 |
Q |
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| T |
7256556 |
atgaaaaaaccactcattaacgaaatcacagtgaaccaccacattttgacaaaaaccatacttaatttaaaatttcaacacaatgattttatcagcgtca |
7256457 |
T |
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| Q |
361 |
ccaccgatctaaccatacacccactccctgctctttctgttttcccttcttacttattcttcattttccaccaaattcaactctaaatatgcctcatttt |
460 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7256456 |
ccaccgatctaaccatacacccactccctgctctttctgttttcccttcttacttattcttcattttccaccaaattcaactctaaatatgcctcatttt |
7256357 |
T |
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| Q |
461 |
gtgataatacagtcaagggattaaaaccaaatca |
494 |
Q |
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| T |
7256356 |
gtgataatacagtcaagggattaaaaccaaatca |
7256323 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 139; E-Value: 2e-72
Query Start/End: Original strand, 10 - 160
Target Start/End: Complemental strand, 7256764 - 7256614
Alignment:
| Q |
10 |
atagatgtccactgcactctctccattgaaaatttcactaaaggggatatgcaccctgcttgatatttgcagcaatcaaatacacgacaatctcttattt |
109 |
Q |
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| T |
7256764 |
atagatgtccactgcactctctccattgaaaatttcactagaggggatatgcaccctgcttgatatttgcagcaatcaaatacacgacaatctcttattt |
7256665 |
T |
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| Q |
110 |
gtgagctatagtttacctttaatcaaaataatatcctaaccagtatcagcg |
160 |
Q |
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| T |
7256664 |
gtgagctatagtttagctttaatcaaaataatatcctaaccggtatcagcg |
7256614 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 13 - 48
Target Start/End: Complemental strand, 31228442 - 31228407
Alignment:
| Q |
13 |
gatgtccactgcactctctccattgaaaatttcact |
48 |
Q |
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| T |
31228442 |
gatgtccaccgcactctctccattgaaaatttcact |
31228407 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 13 - 65
Target Start/End: Complemental strand, 12257029 - 12256977
Alignment:
| Q |
13 |
gatgtccactgcactctctccattgaaaatttcactaaaggggatatgcaccc |
65 |
Q |
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| T |
12257029 |
gatgtccagtgcactttctccattgaaaatttcaccggaggggatctgcaccc |
12256977 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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