View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
	Query
	Query hiting target	Query hiting target's complemental strand
	Query's complemental strand hiting target	Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2966-Insertion-24 (Length: 466)

Name: NF2966-Insertion-24

Description: NF2966

Algorithm: BLASTN 2.2.26 [Sep-21-2011]

Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)

[»] NF2966-Insertion-24

[»] chr7 (1 HSPs)

Alignment Details

Target: chr7 (Bit Score: 356; Significance: 0; HSPs: 1)

Name: chr7

Description:

Target: chr7; HSP #1

Raw Score: 356; E-Value: 0

Query Start/End: Original strand, 9 - 466

Target Start/End: Complemental strand, 48956195 - 48955722

Alignment:

Q	9	gttcacagtcagagtgatagagaagggaagaggttgaggttgaagatc------ctacctgaaaaagataaggtccatatgnnnnnnnnn---actagag	99	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|
T	48956195	gttcacagtcagagtgatagagaagggaagaggttgaggttgaagatcaagatcctacctgaaaaagataaggtccatatgtttttcttttttactagag	48956096	T

Q	100	ataaggtctacatgtttacaaattatattcatctatttattttcttcaaatttaaattc-------caaaaaatttggaactagaatatttaaacggata	192	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	48956095	ataaggtctacatgtttacaaattatattcatctatttattttcttcaaatttaaattctaaaatccaaaaaatttggaactagaatatttaaacggata	48955996	T

Q	193	aacctaaacccgccctatgtccgccccattttttcaaactatatgaaacgagttcaaaatttgcatgctaaattagggtcccattttgccacccgtaata	292	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\| \|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	48955995	aacctaaacccgccctatgtccgccccattttttcaaactatatgaaacgagttcaaaattagcaggctaaattaggggcccattttgccacccgtaata	48955896	T

Q	293	aagtgcattaaaaattgaatatttaaagagtgtcctgaaaatactcgttaacaagatccatttttcaaacgattattgttcttattatgagattcaagct	392	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|
T	48955895	aagtgcattaaaaattgaatatttaaagagtgtcttgaaaatactcattaacaagatccatttttcaaacgattattgttcttattatgagatttaagct	48955796	T

Q	393	gacaatttgaaccaagtcgtttaaacactcaaagtgggttaagatcaaattaaaaatatgttcatactcgagtc	466	Q
		\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	48955795	gacaattcgaaccaagtcgtttaaacactcaaagtgggttaagatcaaattaaaaatatgttcatactcgagtc	48955722	T

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