View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2966-Insertion-25 (Length: 483)

Name: NF2966-Insertion-25
Description: NF2966
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2966-Insertion-25
NF2966-Insertion-25
[»] chr5 (1 HSPs)
chr5 (8-483)||(3862172-3862647)


Alignment Details
Target: chr5 (Bit Score: 460; Significance: 0; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 460; E-Value: 0
Query Start/End: Original strand, 8 - 483
Target Start/End: Complemental strand, 3862647 - 3862172
Alignment:
Q  8 ttcccatcttccaaaagatgcatacatattagacaacatcacatagacataatcttcatccctctccagtccaatcaccttagcagctgcaatctctgct 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3862647 ttcccatcttccaaaagatgcatacatattagacaacatcacatagacataatcttcatccctctccagtccaatcaccttagcagctgcaatctctgct 3862548  T
Q  108 acatgtaaatcttcctgagttccacaagcagcaagcaaagacctccaaaccactccacatgactcaaaacctagttcatgtatcatcttttgtgctctcg 207  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3862547 acatgtaaatcttcctgagttccacaagcagcaagcaaagacctccaaaccactccacatgactcaaaacctagttcatgtatcatcttttgtgctctcg 3862448  T
Q  208 acaaccctcctttttgccccatgagccgtatcattgaacaacaatgcttaatggacggtgcaatcccatattcattaatcatagcatcaaaatactgaat 307  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3862447 acaactctcctttttgccccatgagccgtatcattgaacaacaatgcttaatggacggtgcaatcccatattcattaatcatagcatcaaaatactgaat 3862348  T
Q  308 acccatctcaaatggtatttggctatgtgaacatgctgatataacattaagaaatgtgataccgtcaggttttatatctctttccattttcagcaactcg 407  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  3862347 acccatctcaaatggtatttggctatgtgaacatgctgatataacattaagaaatgtgataccgtcaggttttgtatctctttccattttcagcaactcg 3862248  T
Q  408 aataggctaatagcttgtgcagaatcgctgttgcgagcatacccatatatcattgcattccagcttaccaaattcc 483  Q
    |||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||    
T  3862247 aataggctaatagcttgtgcagaatcaccgttgcgagcatacccatatatcattgcattccagcttaccaaattcc 3862172  T

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