View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2966-Insertion-27 (Length: 322)

Name: NF2966-Insertion-27
Description: NF2966
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2966-Insertion-27
NF2966-Insertion-27
[»] chr4 (16 HSPs)
chr4 (14-322)||(7615100-7615408)
chr4 (14-322)||(7636914-7637225)
chr4 (14-318)||(7606086-7606390)
chr4 (16-213)||(7656207-7656404)
chr4 (14-145)||(7628538-7628669)
chr4 (251-322)||(7628708-7628779)
chr4 (20-204)||(39097544-39097734)
chr4 (152-204)||(39088005-39088057)
chr4 (137-207)||(39070932-39071002)
chr4 (150-204)||(39091394-39091448)
chr4 (261-322)||(7633487-7633548)
chr4 (32-117)||(39091270-39091355)
chr4 (155-194)||(39082354-39082393)
chr4 (32-97)||(39075095-39075160)
chr4 (44-96)||(39070833-39070885)
chr4 (32-93)||(39087879-39087940)
[»] chr7 (5 HSPs)
chr7 (14-322)||(8936062-8936361)
chr7 (14-322)||(8913554-8913858)
chr7 (14-274)||(8941746-8942005)
chr7 (273-322)||(8938838-8938887)
chr7 (261-318)||(8919083-8919140)
[»] chr3 (2 HSPs)
chr3 (14-215)||(40147433-40147634)
chr3 (32-208)||(8102323-8102499)
[»] scaffold0190 (1 HSPs)
scaffold0190 (137-203)||(4435-4501)
[»] chr6 (1 HSPs)
chr6 (15-205)||(6500350-6500540)
[»] chr8 (2 HSPs)
chr8 (150-204)||(15745020-15745074)
chr8 (34-96)||(34173991-34174053)


Alignment Details
Target: chr4 (Bit Score: 301; Significance: 1e-169; HSPs: 16)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 14 - 322
Target Start/End: Original strand, 7615100 - 7615408
Alignment:
Q  14 acatccatgaattgagggtcatttcccattgcctccaaaatctcatgtgaaagacaaacttgaagatctatactaccttcttctattccagcaaaaaccg 113  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7615100 acatccatgaattgagggtcatttcccattgcctccaaaatctcatgtgaaagacaaacttgaagatctatactaccttcttctattccagcaaaaaccg 7615199  T
Q  114 taataagtccatttcctttatatccactacgaactgccacaggctttccccaaccaaaatcattaccataaacatcaaaccatggagaactgctaatggc 213  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  7615200 taataagtccatttcctttatatccactacgaactgccacaggctttccccaaccaaaatcattaccataaacatcaaaccacggagaactgctaatggc 7615299  T
Q  214 tatgaaattattttttgccatgttaggatacctagcaaagcttggatttcttaaccaagacacgtagtgattcttcaacttctcatcagtgtgtgaaaca 313  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  7615300 tatgaaattattttttgccatgttaggatacctagcaaagcttggatttcttaaccaagactcgtagtgattcttcaacttctcatcagtgtgtgaaaca 7615399  T
Q  314 attaacttg 322  Q
    |||||||||    
T  7615400 attaacttg 7615408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 14 - 322
Target Start/End: Original strand, 7636914 - 7637225
Alignment:
Q  14 acatccatgaattgagggtcatttcccattgcctccaaaatctcatgtgaaagacaaacttgaagatctatactaccttcttctattccagcaaaaaccg 113  Q
    ||||||||||| |  ||||||||||||||| |||||||||||||| | | ||||||||||||||| ||||||||||||||||||||||| ||||| ||||    
T  7636914 acatccatgaaattggggtcatttcccattccctccaaaatctcacgaggaagacaaacttgaaggtctatactaccttcttctattccggcaaataccg 7637013  T
Q  114 taataagtccatttcctttatatccactacgaactgccacaggctttccccaaccaaaatcattaccataaacatcaaaccatggagaactgctaatggc 213  Q
    ||||||||||||||  ||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||     
T  7637014 taataagtccatttattttatatccactacgaactgccagaggctttccccatccaaaatcattaccataaacatcaaaccatggagaactactaatgga 7637113  T
Q  214 tatgaaattattttttgccatg---ttaggatacctagcaaagcttggatttcttaaccaagacacgtagtgattcttcaacttctcatcagtgtgtgaa 310  Q
    |||||||||||||||| |||||   |||| |  ||||  ||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||    
T  7637114 tatgaaattattttttaccatgttcttagcaagcctaaaaaagcttggatttcttaaccaagactcgtaatgattcttcaacttctcatcagtgtgtgaa 7637213  T
Q  311 acaattaacttg 322  Q
     |||||||||||    
T  7637214 gcaattaacttg 7637225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 14 - 318
Target Start/End: Original strand, 7606086 - 7606390
Alignment:
Q  14 acatccatgaattgagggtcatttcccattgcctccaaaatctcatgtgaaagacaaacttgaagatctatactaccttcttctattccagcaaaaaccg 113  Q
    ||||||||||| || |||||| |||||||||||||||||| ||  |  | |||||| |||||||| || |||||||||||||||||||||||||| ||      
T  7606086 acatccatgaaatgtgggtcacttcccattgcctccaaaaccttgtaaggaagacatacttgaaggtcaatactaccttcttctattccagcaaatacat 7606185  T
Q  114 taataagtccatttcctttatatccactacgaactgccacaggctttccccaaccaaaatcattaccataaacatcaaaccatggagaactgctaatggc 213  Q
    | | || |||||||  ||||||||||||||||||||| | ||| |||||||| || ||||||||||||||||||||||||||||||||||| |||||||     
T  7606186 ttacaattccatttattttatatccactacgaactgctataggttttccccatccgaaatcattaccataaacatcaaaccatggagaactactaatgga 7606285  T
Q  214 tatgaaattattttttgccatgttaggatacctagcaaagcttggatttcttaaccaagacacgtagtgattcttcaacttctcatcagtgtgtgaaaca 313  Q
    |||||||||||| || | |||| ||| |  |||| |||||||||||||||||||||||||| | ||||||||||||||||||||||| ||||||||| ||    
T  7606286 tatgaaattattattggacatgctagcaaccctaacaaagcttggatttcttaaccaagactcatagtgattcttcaacttctcatccgtgtgtgaagca 7606385  T
Q  314 attaa 318  Q
    |||||    
T  7606386 attaa 7606390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 16 - 213
Target Start/End: Complemental strand, 7656404 - 7656207
Alignment:
Q  16 atccatgaattgagggtcatttcccattgcctccaaaatctcatgtgaaagacaaacttgaagatctatactaccttcttctattccagcaaaaaccgta 115  Q
    ||||||||| | ||| |||||||||||||||||||||||||  |  | |||||| |||||||| || || ||| |||||||||||||||||||  |   |    
T  7656404 atccatgaactcaggatcatttcccattgcctccaaaatcttgtaaggaagacacacttgaaggtcaatgctagcttcttctattccagcaaaggcacaa 7656305  T
Q  116 ataagtccatttcctttatatccactacgaactgccacaggctttccccaaccaaaatcattaccataaacatcaaaccatggagaactgctaatggc 213  Q
    |  | |||||||  ||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||  ||||||||||||||||||    
T  7656304 accattccatttgttttatttccactacgaactgccacaggctttccccatccaaaatcattaccataaacatcaaactttggagaactgctaatggc 7656207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 14 - 145
Target Start/End: Original strand, 7628538 - 7628669
Alignment:
Q  14 acatccatgaattgagggtcatttcccattgcctccaaaatctcatgtgaaagacaaacttgaagatctatactaccttcttctattccagcaaaaaccg 113  Q
    |||||||  ||||||||||||||||||||||||||||||||||| |  | |||||| | |||||| || |||||||||||||||||||||||||| ||      
T  7628538 acatccacaaattgagggtcatttcccattgcctccaaaatctcgtaaggaagacagatttgaaggtcaatactaccttcttctattccagcaaatacat 7628637  T
Q  114 taataagtccatttcctttatatccactacga 145  Q
    ||| |||||| ||   ||||||||||||||||    
T  7628638 taacaagtcctttcattttatatccactacga 7628669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 251 - 322
Target Start/End: Original strand, 7628708 - 7628779
Alignment:
Q  251 aagcttggatttcttaaccaagacacgtagtgattcttcaacttctcatcagtgtgtgaaacaattaacttg 322  Q
    |||||||||||| ||||||||||| ||||||||||||||||| ||||||||||||||||| |||||||||||    
T  7628708 aagcttggattttttaaccaagactcgtagtgattcttcaacatctcatcagtgtgtgaagcaattaacttg 7628779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 20 - 204
Target Start/End: Original strand, 39097544 - 39097734
Alignment:
Q  20 atgaattgagggtcatttcccattgcctccaaaatctcatgtgaaagacaaacttgaagatctatactaccttcttctattccagcaaaaaccgtaataa 119  Q
    ||||||||||||||||||||||| ||||||||||| ||||  ||||| ||||||| || ||| ||||||||||||||||| |||  ||| |  || ||      
T  39097544 atgaattgagggtcatttcccatagcctccaaaatatcataagaaaggcaaacttcaacatcaatactaccttcttctatcccactaaacatagttatcg 39097643  T
Q  120 gtccatttcctttatat------ccactacgaactgccacaggctttccccaaccaaaatcattaccataaacatcaaaccatggagaact 204  Q
     |||||  | ||||| |      ||||| | ||| || |||||||| ||||||||||| |||||||||||||||||||||| |||||||||    
T  39097644 ttccatcacttttatttgcacccccacttctaacagcaacaggcttaccccaaccaaagtcattaccataaacatcaaaccttggagaact 39097734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 152 - 204
Target Start/End: Original strand, 39088005 - 39088057
Alignment:
Q  152 acaggctttccccaaccaaaatcattaccataaacatcaaaccatggagaact 204  Q
    |||||||| |||||||||||||||||| ||||||||||||||| |||||||||    
T  39088005 acaggcttcccccaaccaaaatcattatcataaacatcaaaccttggagaact 39088057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 137 - 207
Target Start/End: Original strand, 39070932 - 39071002
Alignment:
Q  137 ccactacgaactgccacaggctttccccaaccaaaatcattaccataaacatcaaaccatggagaactgct 207  Q
    ||||| ||||| ||||| ||||||||||| ||||||||||| ||| ||||||||||||  |||||||||||    
T  39070932 ccacttcgaaccgccactggctttccccagccaaaatcattgccaaaaacatcaaacctcggagaactgct 39071002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 150 - 204
Target Start/End: Original strand, 39091394 - 39091448
Alignment:
Q  150 ccacaggctttccccaaccaaaatcattaccataaacatcaaaccatggagaact 204  Q
    |||||||||| |||||||||||||||||||| |||||||||||||  ||||||||    
T  39091394 ccacaggcttcccccaaccaaaatcattaccgtaaacatcaaacctcggagaact 39091448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 261 - 322
Target Start/End: Original strand, 7633487 - 7633548
Alignment:
Q  261 ttcttaaccaagacacgtagtgattcttcaacttctcatcagtgtgtgaaacaattaacttg 322  Q
    |||||||||||||| | |||||||| |||| |||||||| |||||||||| |||||||||||    
T  7633487 ttcttaaccaagactcatagtgatttttcagcttctcattagtgtgtgaagcaattaacttg 7633548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 32 - 117
Target Start/End: Original strand, 39091270 - 39091355
Alignment:
Q  32 tcatttcccattgcctccaaaatctcatgtgaaagacaaacttgaagatctatactaccttcttctattccagcaaaaaccgtaat 117  Q
    ||||||||||  ||||||||||||||||  ||||||||||||| || |||||| ||||||||||| |  |||||||| || |||||    
T  39091270 tcatttcccaaagcctccaaaatctcataagaaagacaaacttcaacatctatgctaccttcttcaaccccagcaaacacggtaat 39091355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 155 - 194
Target Start/End: Original strand, 39082354 - 39082393
Alignment:
Q  155 ggctttccccaaccaaaatcattaccataaacatcaaacc 194  Q
    ||||| ||||||||||||||||||||||||||||||||||    
T  39082354 ggcttcccccaaccaaaatcattaccataaacatcaaacc 39082393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 32 - 97
Target Start/End: Original strand, 39075095 - 39075160
Alignment:
Q  32 tcatttcccattgcctccaaaatctcatgtgaaagacaaacttgaagatctatactaccttcttct 97  Q
    ||||||||||| ||||||||||| ||||  | |||||||||||||| ||| | |||||||||||||    
T  39075095 tcatttcccatagcctccaaaatatcataaggaagacaaacttgaatatcaacactaccttcttct 39075160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 44 - 96
Target Start/End: Original strand, 39070833 - 39070885
Alignment:
Q  44 gcctccaaaatctcatgtgaaagacaaacttgaagatctatactaccttcttc 96  Q
    ||||||||||||||||  |||||||||| || || ||||||||||||||||||    
T  39070833 gcctccaaaatctcataagaaagacaaatttcaacatctatactaccttcttc 39070885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 32 - 93
Target Start/End: Original strand, 39087879 - 39087940
Alignment:
Q  32 tcatttcccattgcctccaaaatctcatgtgaaagacaaacttgaagatctatactaccttc 93  Q
    ||||||||||  ||||||||||||||||  ||||||||||||| || ||| || ||||||||    
T  39087879 tcatttcccaaagcctccaaaatctcataagaaagacaaacttcaatatcaatgctaccttc 39087940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 196; Significance: 1e-106; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 14 - 322
Target Start/End: Complemental strand, 8936361 - 8936062
Alignment:
Q  14 acatccatgaattgagggtcatttcccattgcctccaaaatctcatgtgaaagacaaacttgaagatctatactaccttcttctattccagcaaaaaccg 113  Q
    |||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||| || |||||||||||||||||||| ||||| || |    
T  8936361 acatccatgaattgagggtcatttcccattgcctccaaaatctcatatggaagacaaacttgaaggtcaatactaccttcttctattccggcaaatactg 8936262  T
Q  114 taataagtccatttcctttatatccactacgaactgccacaggctttccccaaccaaaatcattaccataaacatcaaaccatggagaactgctaatggc 213  Q
    |||||||||||||| |||||||||||| |||| |||| |||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||    
T  8936261 taataagtccatttgctttatatccaccacgacctgctacaggctttccccatccaaaatcattaccataaacatcaaaccacggagaactgctaatggc 8936162  T
Q  214 tatgaaattattttttgccatgttaggatacctagcaaagcttggatttcttaaccaagacacgtagtgattcttcaacttctcatcagtgtgtgaaaca 313  Q
    ||||||||| ||||||| |||||||      ||   ||||||||||||||||||||||||| | |||||||||||||||||||||||||||||| || ||    
T  8936161 tatgaaattcttttttggcatgtta------ct---aaagcttggatttcttaaccaagactcatagtgattcttcaacttctcatcagtgtgtaaagca 8936071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 156; E-Value: 7e-83
Query Start/End: Original strand, 14 - 322
Target Start/End: Complemental strand, 8913858 - 8913554
Alignment:
Q  14 acatccatgaattgagggtcatttcccattgcctccaaaatctcatgtgaaagacaaacttgaagatctatactaccttcttctattccagcaaaaaccg 113  Q
    ||||||||||| |  ||||||||||||||| |||||||||||||| | | ||||||||||||||| |||||| ||||||||||||||||  |||| || |    
T  8913858 acatccatgaaattggggtcatttcccattccctccaaaatctcacgaggaagacaaacttgaaggtctataataccttcttctattccgacaaatactg 8913759  T
Q  114 taataagtccatttcctttatatccactacgaactgccacaggctttccccaaccaaaatcattaccataaacatcaaaccatggagaactgctaatggc 213  Q
    ||||||||||||||  |||||||||||||||||||||||||||||||||||       |||||||||||||||||||||| |||||||||| |||||||     
T  8913758 taataagtccatttattttatatccactacgaactgccacaggctttcccc-------atcattaccataaacatcaaactatggagaactactaatgga 8913666  T
Q  214 tatgaaattattttttgccatg---ttaggatacctagcaaagcttggatttcttaaccaagacacgtagtgattcttcaacttctcatcagtgtgtgaa 310  Q
    |||||||||| ||||| |||||   |||| |  |||| |||||||||||||||||||||||||| |||| ||||||||||||||||| |||| |||||||    
T  8913665 tatgaaattagtttttaccatgttcttagcaagcctaacaaagcttggatttcttaaccaagactcgtaatgattcttcaacttctcgtcagcgtgtgaa 8913566  T
Q  311 acaattaacttg 322  Q
     |||||||||||    
T  8913565 gcaattaacttg 8913554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 109; E-Value: 8e-55
Query Start/End: Original strand, 14 - 274
Target Start/End: Complemental strand, 8942005 - 8941746
Alignment:
Q  14 acatccatgaattgagggtcatttcccattgcctccaaaatctcatgtgaaagacaaacttgaagatctatactaccttcttctattccagcaaaaaccg 113  Q
    |||||||||||  | |||||| |||||||||||||||||| ||| |  | |||||| |||||||| || |||||||||||||||||||||||||| ||      
T  8942005 acatccatgaaacgtgggtcacttcccattgcctccaaaacctcgtaaggaagacatacttgaaggtcaatactaccttcttctattccagcaaatacat 8941906  T
Q  114 taataagtccatttcctttatatccactacgaactgccacaggctttccccaaccaaaatcattaccataaacatcaaaccatggagaactgctaatggc 213  Q
    | | || |||||||  |||||||||||||||| |||| | ||| |||||||| || ||||||||||||||||||||||||||||||||||| |||||||     
T  8941905 ttacaattccatttattttatatccactacga-ctgctataggttttccccatccgaaatcattaccataaacatcaaaccatggagaactactaatgga 8941807  T
Q  214 tatgaaattattttttgccatgttaggatacctagcaaagcttggatttcttaaccaagac 274  Q
    || ||||||||| || | |||| ||| |  |||| ||||||||||||||||||||||||||    
T  8941806 taagaaattattattggacatgctagcaaccctaacaaagcttggatttcttaaccaagac 8941746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 273 - 322
Target Start/End: Complemental strand, 8938887 - 8938838
Alignment:
Q  273 acacgtagtgattcttcaacttctcatcagtgtgtgaaacaattaacttg 322  Q
    |||| ||||||||||||||||||||||| ||||||||| |||||||||||    
T  8938887 acacatagtgattcttcaacttctcatccgtgtgtgaagcaattaacttg 8938838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 261 - 318
Target Start/End: Complemental strand, 8919140 - 8919083
Alignment:
Q  261 ttcttaaccaagacacgtagtgattcttcaacttctcatcagtgtgtgaaacaattaa 318  Q
    |||||||||||||| | |||||||| |||| |||||||| |||||||||| |||||||    
T  8919140 ttcttaaccaagactcatagtgatttttcagcttctcattagtgtgtgaagcaattaa 8919083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 86; Significance: 4e-41; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 14 - 215
Target Start/End: Complemental strand, 40147634 - 40147433
Alignment:
Q  14 acatccatgaattgagggtcatttcccattgcctccaaaatctcatgtgaaagacaaacttgaagatctatactaccttcttctattccagcaaaaaccg 113  Q
    ||||||||||| | | |||||||||||||||||||||||||||  || | |||||| |||||||  || || |||||||||||| |||||||||| || |    
T  40147634 acatccatgaagtcatggtcatttcccattgcctccaaaatcttgtgaggaagacacacttgaaagtccatgctaccttcttcttttccagcaaatacag 40147535  T
Q  114 taataagtccatttcctttatatccactacgaactgccacaggctttccccaaccaaaatcattaccataaacatcaaaccatggagaactgctaatggc 213  Q
    |||| | |||| ||  ||||| |||||| |||||||||||||| | |||||| ||||||||||||||||||||||||||||| || ||| ||||| ||||    
T  40147534 taatcattccacttattttatttccactgcgaactgccacaggttctccccatccaaaatcattaccataaacatcaaaccacggggaattgctactggc 40147435  T
Q  214 ta 215  Q
    ||    
T  40147434 ta 40147433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 32 - 208
Target Start/End: Original strand, 8102323 - 8102499
Alignment:
Q  32 tcatttcccattgcctccaaaatctcatgtgaaagacaaacttgaagatctatactaccttcttctattccagcaaaaaccgtaataagtccatttcctt 131  Q
    |||||||||||||||||||||||||  || | |||||| |||||||| || |||||||||||||||||||||||||| || | ||  |||||| ||  ||    
T  8102323 tcatttcccattgcctccaaaatcttgtgaggaagacatacttgaaggtccatactaccttcttctattccagcaaatacagcaaacagtccactttgtt 8102422  T
Q  132 tatatccactacgaactgccacaggctttccccaaccaaaatcattaccataaacatcaaaccatggagaactgcta 208  Q
    ||| |||||| ||||||||||| || |||||||| ||||||| ||| |||||||||||||||||  | |||||||||    
T  8102423 tatttccactgcgaactgccactggttttccccatccaaaattattgccataaacatcaaaccactgggaactgcta 8102499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0190 (Bit Score: 47; Significance: 8e-18; HSPs: 1)
Name: scaffold0190
Description:

Target: scaffold0190; HSP #1
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 137 - 203
Target Start/End: Original strand, 4435 - 4501
Alignment:
Q  137 ccactacgaactgccacaggctttccccaaccaaaatcattaccataaacatcaaaccatggagaac 203  Q
    ||||| |||||  ||||||| |||||||||||||||||||||||||||||||||||||| |||||||    
T  4435 ccacttcgaacccccacaggttttccccaaccaaaatcattaccataaacatcaaaccaaggagaac 4501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 47; Significance: 8e-18; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 15 - 205
Target Start/End: Original strand, 6500350 - 6500540
Alignment:
Q  15 catccatgaattgagggtcatttcccattgcctccaaaatctcatgtgaaagacaaacttgaagatctatactaccttcttctattccagcaaaaaccgt 114  Q
    |||||||||| | ||||||||  | |||||| |||||| |||  |  | ||||||||||||||| ||||||||||||| |||| |||||||||| ||  |    
T  6500350 catccatgaaattagggtcataactcattgcttccaaagtcttgtaaggaagacaaacttgaaggtctatactaccttattcttttccagcaaatacact 6500449  T
Q  115 aataagtccatttcctttatatccactacgaactgccacaggctttccccaaccaaaatcattaccataaacatcaaaccatggagaactg 205  Q
    ||  |  |||| |  ||||| | |||| |||| |||||| || || ||||| ||||||||||||||||||| ||||||||| || ||||||    
T  6500450 aaccataccatctattttatttacactgcgaaatgccacgggtttcccccatccaaaatcattaccataaatatcaaaccacggggaactg 6500540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 150 - 204
Target Start/End: Complemental strand, 15745074 - 15745020
Alignment:
Q  150 ccacaggctttccccaaccaaaatcattaccataaacatcaaaccatggagaact 204  Q
    ||||||| |||||||||||||||||||| ||||||||||||||||| || |||||    
T  15745074 ccacaggttttccccaaccaaaatcattgccataaacatcaaaccagggtgaact 15745020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 34 - 96
Target Start/End: Original strand, 34173991 - 34174053
Alignment:
Q  34 atttcccattgcctccaaaatctcatgtgaaagacaaacttgaagatctatactaccttcttc 96  Q
    |||||| || ||||||||||| ||||  | |||||||||||||| ||| ||||||||||||||    
T  34173991 atttccaatagcctccaaaatatcataaggaagacaaacttgaatatcaatactaccttcttc 34174053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University