View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2966-Insertion-29 (Length: 365)
Name: NF2966-Insertion-29
Description: NF2966
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2966-Insertion-29 |
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Alignment Details
Target: chr6 (Bit Score: 299; Significance: 1e-168; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 299; E-Value: 1e-168
Query Start/End: Original strand, 7 - 338
Target Start/End: Original strand, 24809209 - 24809540
Alignment:
| Q |
7 |
aattatatgtatacataaaaacataatataaactctgaaacacatacataattgttgtggacaacaactgagagagtatctcagcaaaaacatgtagtca |
106 |
Q |
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| T |
24809209 |
aattatatgtatacatgaaaacataatataaactctgaaacacatacataattgttgtggacaacaactgagagagtatctcagcaaaaacatgtagtca |
24809308 |
T |
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| Q |
107 |
gagaaaacaacagtgactnnnnnnntagttgagatgaacatggtgacacatgtttcagtttctttgattattatcatgtctctttgtaagacaaatttca |
206 |
Q |
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| T |
24809309 |
gagaaaacaacagtgactaaaaaaatagttgagatgaacatggtgacatatgtttcagtttctttgattattatcatgtctctttgtaagacaaatttca |
24809408 |
T |
|
| Q |
207 |
aagccattcactaaccgagctgagggaaaaaaggacatcctatcttccttcatttgtttccatctgttgtatatcattcaaacatgttagctaggatcaa |
306 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24809409 |
aagccattcactaaccgagctgagggaaaaaaggacatcctatcttccttcatttgtttccatctgttgtatatcattcaaacatgttagctaggatcaa |
24809508 |
T |
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| Q |
307 |
atttgatagattacgtggttttctcaaattat |
338 |
Q |
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| T |
24809509 |
atttgatagattacgtggttttttcaaattat |
24809540 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 253 - 319
Target Start/End: Original strand, 29946339 - 29946405
Alignment:
| Q |
253 |
ccttcatttgtttccatctgttgtatatcattcaaacatgttagctaggatcaaatttgatagatta |
319 |
Q |
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| T |
29946339 |
ccttcatttatttccgtctgctgtatatcatttaaacatgttaggtaggatcaaatttgatatatta |
29946405 |
T |
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