View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2966-Insertion-30 (Length: 331)

Name: NF2966-Insertion-30
Description: NF2966
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2966-Insertion-30
NF2966-Insertion-30
[»] chr3 (4 HSPs)
chr3 (8-186)||(42091679-42091856)
chr3 (238-331)||(42091572-42091665)
chr3 (18-71)||(20519298-20519351)
chr3 (12-68)||(54437651-54437707)
[»] chr8 (7 HSPs)
chr8 (7-97)||(37010321-37010411)
chr8 (20-131)||(6630324-6630435)
chr8 (8-73)||(7405393-7405458)
chr8 (12-68)||(32166640-32166696)
chr8 (19-131)||(35574751-35574863)
chr8 (20-127)||(6803888-6803995)
chr8 (21-117)||(13149037-13149133)
[»] chr6 (3 HSPs)
chr6 (12-67)||(32342614-32342669)
chr6 (18-71)||(32047194-32047247)
chr6 (19-71)||(32342458-32342510)
[»] chr5 (10 HSPs)
chr5 (18-67)||(39730312-39730361)
chr5 (8-67)||(14258884-14258943)
chr5 (8-71)||(2243318-2243381)
chr5 (7-52)||(972838-972883)
chr5 (12-73)||(7113614-7113675)
chr5 (16-73)||(39707257-39707313)
chr5 (14-71)||(39808234-39808291)
chr5 (12-68)||(14138559-14138615)
chr5 (18-94)||(37077780-37077856)
chr5 (19-79)||(41264550-41264610)
[»] chr1 (3 HSPs)
chr1 (8-71)||(35956993-35957056)
chr1 (12-71)||(52432675-52432734)
chr1 (12-124)||(12144984-12145093)
[»] chr7 (4 HSPs)
chr7 (18-74)||(23944096-23944152)
chr7 (12-71)||(22593574-22593630)
chr7 (8-97)||(34891375-34891464)
chr7 (12-60)||(4960613-4960661)
[»] chr4 (3 HSPs)
chr4 (14-73)||(11020081-11020139)
chr4 (14-73)||(54000216-54000275)
chr4 (7-68)||(20512832-20512893)
[»] chr2 (3 HSPs)
chr2 (18-73)||(9050295-9050350)
chr2 (12-71)||(16576262-16576321)
chr2 (18-84)||(38576926-38576992)


Alignment Details
Target: chr3 (Bit Score: 159; Significance: 1e-84; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 159; E-Value: 1e-84
Query Start/End: Original strand, 8 - 186
Target Start/End: Complemental strand, 42091856 - 42091679
Alignment:
Q  8 aattaattatcattttcatctcaaaaacatcaaactctttcatctctttcatttaacatgtgatttcaatatctttcactccaaaatcgagtactacttg 107  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42091856 aattaattatcattttcatctcaaaaacatcaaactttttcatctctttcatttaacatgtgatttcaatatctttcactccaaaatcgagtactacttg 42091757  T
Q  108 tcaataggggcaaattactctcaaattatgtatgcctcacggattgacacttgttaacgataccccaatagggcacatt 186  Q
    |||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  42091756 tcaataggggaaaactactctcaaattatgtatgcctcacggattgacacttgttaacgata-cccaatagggcacatt 42091679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 238 - 331
Target Start/End: Complemental strand, 42091665 - 42091572
Alignment:
Q  238 atagattgtgactgtctgtatttaaagttttgttgctgatatcacatatgattcctatgctatgcattgccaatgttttctccattagctttga 331  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42091665 atagattgtgaccgtctgtatttaaagttttgttgctgatatcacatatgattcctatgctatgcattgccaatgttttctccattagctttga 42091572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 18 - 71
Target Start/End: Complemental strand, 20519351 - 20519298
Alignment:
Q  18 cattttcatctcaaaaacatcaaactctttcatctctttcatttaacatgtgat 71  Q
    |||||||||||||| ||| ||||| |  ||||||||||||||| ||||||||||    
T  20519351 cattttcatctcaagaacgtcaaatttcttcatctctttcattaaacatgtgat 20519298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 12 - 68
Target Start/End: Original strand, 54437651 - 54437707
Alignment:
Q  12 aattatcattttcatctcaaaaacatcaaactctttcatctctttcatttaacatgt 68  Q
    ||||| |||||||||||||| ||||| |||||  ||||| || ||||||||||||||    
T  54437651 aattaccattttcatctcaataacattaaacttcttcatatccttcatttaacatgt 54437707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 47; Significance: 8e-18; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 7 - 97
Target Start/End: Complemental strand, 37010411 - 37010321
Alignment:
Q  7 aaattaattatcattttcatctcaaaaacatcaaactctttcatctctttcatttaacatgtgatttcaatatctttcactccaaaatcga 97  Q
    |||||| ||| ||||||||||||||||||||||||||  ||||| |||||||||||||||||||| || || || |||| |||| ||||||    
T  37010411 aaattagttaccattttcatctcaaaaacatcaaacttattcatttctttcatttaacatgtgatctctatctccttcattccataatcga 37010321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 20 - 131
Target Start/End: Complemental strand, 6630435 - 6630324
Alignment:
Q  20 ttttcatctcaaaaacatcaaactctttcatctctttcatttaacatgtgatttcaatatctttcactccaaaatcgagtactacttgtcaataggggca 119  Q
    |||| ||||||| ||||||||||| |||||||| ||||||| |||||||| | || || || |||| | ||||||| | | |||||||||| |||||| |    
T  6630435 tttttatctcaagaacatcaaactttttcatctttttcattcaacatgtgttatccatctccttcatttcaaaatcaaatcctacttgtcattaggggta 6630336  T
Q  120 aattactctcaa 131  Q
    ||||||||||||    
T  6630335 aattactctcaa 6630324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 8 - 73
Target Start/End: Complemental strand, 7405458 - 7405393
Alignment:
Q  8 aattaattatcattttcatctcaaaaacatcaaactctttcatctctttcatttaacatgtgattt 73  Q
    |||||||| |||||||||| |||| |||||| |  | |||||||||||||||||||||||||||||    
T  7405458 aattaattgtcattttcatttcaagaacatccatatttttcatctctttcatttaacatgtgattt 7405393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 12 - 68
Target Start/End: Complemental strand, 32166696 - 32166640
Alignment:
Q  12 aattatcattttcatctcaaaaacatcaaactctttcatctctttcatttaacatgt 68  Q
    |||||||||||||||||||| |||||||||||  |||||||| || ||| |||||||    
T  32166696 aattatcattttcatctcaagaacatcaaacttcttcatctcctttattcaacatgt 32166640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 19 - 131
Target Start/End: Complemental strand, 35574863 - 35574751
Alignment:
Q  19 attttcatctcaaaaacatcaaactctttcatctctttcatttaacatgtgatttcaatatctttcactccaaaatcgagtactacttgtcaataggggc 118  Q
    ||||||||||||| ||||| ||  | |||||| ||||||||| ||||| |||||| ||| ||||||  ||||||||||| |  || |||||| ||| ||     
T  35574863 attttcatctcaagaacattaatttttttcatatctttcattgaacatatgattttaatctctttcgttccaaaatcgaatcatagttgtcattagcggt 35574764  T
Q  119 aaattactctcaa 131  Q
    ||||||| |||||    
T  35574763 aaattaccctcaa 35574751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 20 - 127
Target Start/End: Complemental strand, 6803995 - 6803888
Alignment:
Q  20 ttttcatctcaaaaacatcaaactctttcatctctttcatttaacatgtgatttcaatatctttcactccaaaatcgagtactacttgtcaataggggca 119  Q
    |||| |||||||||||||||||||  || |||| ||||||| | |||||| | || || || |||| | ||||||| | | |||||||||| |||||| |    
T  6803995 tttttatctcaaaaacatcaaacttctttatctttttcattcaccatgtgttatccatctccttcatttcaaaatcaaatcctacttgtcattaggggta 6803896  T
Q  120 aattactc 127  Q
    ||||||||    
T  6803895 aattactc 6803888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 21 - 117
Target Start/End: Complemental strand, 13149133 - 13149037
Alignment:
Q  21 tttcatctcaaaaacatcaaactctttcatctctttcatttaacatgtgatttcaatatctttcactccaaaatcgagtactacttgtcaatagggg 117  Q
    ||||||||||||||||||||| |  |||||||  || ||| || |||||||||| || ||||||| |||| ||| ||   |||||||||| ||||||    
T  13149133 tttcatctcaaaaacatcaaatttcttcatctacttaattcaatatgtgatttctatctctttcattccagaattgaaccctacttgtcactagggg 13149037  T

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Target: chr6 (Bit Score: 44; Significance: 5e-16; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 12 - 67
Target Start/End: Original strand, 32342614 - 32342669
Alignment:
Q  12 aattatcattttcatctcaaaaacatcaaactctttcatctctttcatttaacatg 67  Q
    |||||||||||||||||||||||||||||||| ||||||||| |||||| ||||||    
T  32342614 aattatcattttcatctcaaaaacatcaaactttttcatctcattcattcaacatg 32342669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 18 - 71
Target Start/End: Original strand, 32047194 - 32047247
Alignment:
Q  18 cattttcatctcaaaaacatcaaactctttcatctctttcatttaacatgtgat 71  Q
    |||||||||||||| |||||||||||  |||||||| |||||| ||||| ||||    
T  32047194 cattttcatctcaagaacatcaaacttcttcatctcattcattcaacatatgat 32047247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 19 - 71
Target Start/End: Original strand, 32342458 - 32342510
Alignment:
Q  19 attttcatctcaaaaacatcaaactctttcatctctttcatttaacatgtgat 71  Q
    ||||| |||||| ||| |||||||| ||||||||  |||||||||||||||||    
T  32342458 atttttatctcagaaatatcaaactttttcatctgattcatttaacatgtgat 32342510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 18 - 67
Target Start/End: Complemental strand, 39730361 - 39730312
Alignment:
Q  18 cattttcatctcaaaaacatcaaactctttcatctctttcatttaacatg 67  Q
    |||||||||||||| ||||||||||| |||||||||||||||||||||||    
T  39730361 cattttcatctcaagaacatcaaactttttcatctctttcatttaacatg 39730312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 8 - 67
Target Start/End: Complemental strand, 14258943 - 14258884
Alignment:
Q  8 aattaattatcattttcatctcaaaaacatcaaactctttcatctctttcatttaacatg 67  Q
    ||||| |||||||||||||||||||||||||||||| |||||  | ||||||| ||||||    
T  14258943 aattatttatcattttcatctcaaaaacatcaaactttttcacttttttcattcaacatg 14258884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 8 - 71
Target Start/End: Complemental strand, 2243381 - 2243318
Alignment:
Q  8 aattaattatcattttcatctcaaaaacatcaaactctttcatctctttcatttaacatgtgat 71  Q
    ||||| ||| |||||||||||||| |||||||||||  ||||| || |||||| ||||||||||    
T  2243381 aattagttaccattttcatctcaagaacatcaaacttcttcatatccttcattcaacatgtgat 2243318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 7 - 52
Target Start/End: Original strand, 972838 - 972883
Alignment:
Q  7 aaattaattatcattttcatctcaaaaacatcaaactctttcatct 52  Q
    |||||| |||||||||||||||||| |||||||||||  |||||||    
T  972838 aaattagttatcattttcatctcaagaacatcaaacttcttcatct 972883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 12 - 73
Target Start/End: Complemental strand, 7113675 - 7113614
Alignment:
Q  12 aattatcattttcatctcaaaaacatcaaactctttcatctctttcatttaacatgtgattt 73  Q
    |||||||||||||||||||| || || |||||  |||||||| |||||| ||| ||||||||    
T  7113675 aattatcattttcatctcaagaatattaaacttcttcatctcattcattcaacgtgtgattt 7113614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 16 - 73
Target Start/End: Original strand, 39707257 - 39707313
Alignment:
Q  16 atcattttcatctcaaaaacatcaaactctttcatctctttcatttaacatgtgattt 73  Q
    |||||||||||||| ||||||| |||||| |||||||  || ||||||||||||||||    
T  39707257 atcattttcatctccaaaacataaaactcattcatctgatt-atttaacatgtgattt 39707313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 14 - 71
Target Start/End: Complemental strand, 39808291 - 39808234
Alignment:
Q  14 ttatcattttcatctcaaaaacatcaaactctttcatctctttcatttaacatgtgat 71  Q
    |||||||||||| || || | ||||||||| ||||||||| |||||||||||| ||||    
T  39808291 ttatcattttcaccttaagaccatcaaactttttcatctccttcatttaacatatgat 39808234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 12 - 68
Target Start/End: Original strand, 14138559 - 14138615
Alignment:
Q  12 aattatcattttcatctcaaaaacatcaaactctttcatctctttcatttaacatgt 68  Q
    ||||| ||||||||||| || || |||||||| | |||||||||||||| |||||||    
T  14138559 aattaccattttcatcttaagaatatcaaactttctcatctctttcattcaacatgt 14138615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 18 - 94
Target Start/End: Original strand, 37077780 - 37077856
Alignment:
Q  18 cattttcatctcaaaaacatcaaactctttcatctctttcatttaacatgtgatttcaatatctttcactccaaaat 94  Q
    |||||||||||||||||||||||| |  || || | ||||||| |||||||||| || ||||| |||| | ||||||    
T  37077780 cattttcatctcaaaaacatcaaatttcttaatttttttcattcaacatgtgatctctatatcattcatttcaaaat 37077856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 19 - 79
Target Start/End: Original strand, 41264550 - 41264610
Alignment:
Q  19 attttcatctcaaaaacatcaaactctttcatctctttcatttaacatgtgatttcaatat 79  Q
    |||||||| |||| ||||||||| |  ||||||||||||||||||| || |||||| ||||    
T  41264550 attttcatatcaagaacatcaaatttcttcatctctttcatttaacttgagatttccatat 41264610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 36; Significance: 0.00000000003; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 8 - 71
Target Start/End: Original strand, 35956993 - 35957056
Alignment:
Q  8 aattaattatcattttcatctcaaaaacatcaaactctttcatctctttcatttaacatgtgat 71  Q
    ||||||||| |||||| ||||||||||||||||||| || ||| ||||| |||||| |||||||    
T  35956993 aattaattaccatttttatctcaaaaacatcaaacttttccatttcttttatttaatatgtgat 35957056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 12 - 71
Target Start/End: Original strand, 52432675 - 52432734
Alignment:
Q  12 aattatcattttcatctcaaaaacatcaaactctttcatctctttcatttaacatgtgat 71  Q
    ||||| |||||||||||||| ||||| |||||  |||||||| ||||||||||| |||||    
T  52432675 aattaccattttcatctcaagaacattaaacttcttcatctccttcatttaacaagtgat 52432734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 12 - 124
Target Start/End: Original strand, 12144984 - 12145093
Alignment:
Q  12 aattatcattttcatctcaaaaacatcaaactctttcatctctttcatttaacatgtgatttcaatatctttcactccaaaatcgagtactacttgtcaa 111  Q
    |||||||||||| ||||||| |   |||||||  |||||||| |||||| ||||||||||||  || ||| |||||| |||||| | | |||||| ||||    
T  12144984 aattatcatttttatctcaata---tcaaacttcttcatctcattcattcaacatgtgattttcatctctgtcactctaaaatcaaatcctacttatcaa 12145080  T
Q  112 taggggcaaatta 124  Q
    ||| || ||||||    
T  12145081 tagaggtaaatta 12145093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 33; Significance: 0.000000002; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 18 - 74
Target Start/End: Original strand, 23944096 - 23944152
Alignment:
Q  18 cattttcatctcaaaaacatcaaactctttcatctctttcatttaacatgtgatttc 74  Q
    ||||||||||| || |||||||||||  ||| ||||||||||| |||||||||||||    
T  23944096 cattttcatcttaagaacatcaaacttcttcttctctttcattcaacatgtgatttc 23944152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 12 - 71
Target Start/End: Complemental strand, 22593630 - 22593574
Alignment:
Q  12 aattatcattttcatctcaaaaacatcaaactctttcatctctttcatttaacatgtgat 71  Q
    |||| ||||||||||||||| ||||||||||   ||||||| ||||||| ||||||||||    
T  22593630 aattgtcattttcatctcaagaacatcaaac---ttcatctatttcattcaacatgtgat 22593574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 8 - 97
Target Start/End: Original strand, 34891375 - 34891464
Alignment:
Q  8 aattaattatcattttcatctcaaaaacatcaaactctttcatctctttcatttaacatgtgatttcaatatctttcactccaaaatcga 97  Q
    |||| |||||||||||||| | || |||||||||||  || ||||  ||||||||||||||||| |  || ||||||| ||| |||||||    
T  34891375 aattcattatcattttcatattaagaacatcaaacttctttatcttcttcatttaacatgtgatctagatctctttcattcccaaatcga 34891464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 12 - 60
Target Start/End: Original strand, 4960613 - 4960661
Alignment:
Q  12 aattatcattttcatctcaaaaacatcaaactctttcatctctttcatt 60  Q
    |||||| ||||||||||||||||||| ||||| | |||||| |||||||    
T  4960613 aattattattttcatctcaaaaacattaaactttgtcatctttttcatt 4960661  T

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Target: chr4 (Bit Score: 32; Significance: 0.000000007; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 14 - 73
Target Start/End: Complemental strand, 11020139 - 11020081
Alignment:
Q  14 ttatcattttcatctcaaaaacatcaaactctttcatctctttcatttaacatgtgattt 73  Q
    ||||||||||||||| ||||| ||||||| |||| ||||| || ||||||||||||||||    
T  11020139 ttatcattttcatcttaaaaatatcaaac-cttttatctcctttatttaacatgtgattt 11020081  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 14 - 73
Target Start/End: Complemental strand, 54000275 - 54000216
Alignment:
Q  14 ttatcattttcatctcaaaaacatcaaactctttcatctctttcatttaacatgtgattt 73  Q
    |||||||||| |||| ||||||||||||||  || ||||| ||||||||| |||||||||    
T  54000275 ttatcatttttatcttaaaaacatcaaacttctttatctccttcatttaagatgtgattt 54000216  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 7 - 68
Target Start/End: Complemental strand, 20512893 - 20512832
Alignment:
Q  7 aaattaattatcattttcatctcaaaaacatcaaactctttcatctctttcatttaacatgt 68  Q
    |||| |||| |||||||||||| | ||||||||||||  |||||||  ||||||||||||||    
T  20512893 aaatcaattgtcattttcatcttataaacatcaaacttcttcatcttcttcatttaacatgt 20512832  T

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Target: chr2 (Bit Score: 32; Significance: 0.000000007; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 18 - 73
Target Start/End: Complemental strand, 9050350 - 9050295
Alignment:
Q  18 cattttcatctcaaaaacatcaaactctttcatctctttcatttaacatgtgattt 73  Q
    ||||||||||| ||||| ||||| |  |||||||||||||||||||||| ||||||    
T  9050350 cattttcatcttaaaaatatcaagcattttcatctctttcatttaacatttgattt 9050295  T

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Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 12 - 71
Target Start/End: Original strand, 16576262 - 16576321
Alignment:
Q  12 aattatcattttcatctcaaaaacatcaaactctttcatctctttcatttaacatgtgat 71  Q
    ||||| ||||||| |||||| |||||||||||  |||||||| |||||| ||||||||||    
T  16576262 aattaccattttcctctcaagaacatcaaacttcttcatctccttcattcaacatgtgat 16576321  T

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Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 18 - 84
Target Start/End: Complemental strand, 38576992 - 38576926
Alignment:
Q  18 cattttcatctcaaaaacatcaaactctttcatctctttcatttaacatgtgatttcaatatctttc 84  Q
    ||||||||||| || ||||| ||| |  ||||||||||||||| ||||||||||||| || ||||||    
T  38576992 cattttcatctaaagaacattaaagttcttcatctctttcattcaacatgtgatttccatctctttc 38576926  T

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