View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2966-Insertion-31 (Length: 386)

Name: NF2966-Insertion-31
Description: NF2966
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2966-Insertion-31
NF2966-Insertion-31
[»] chr4 (3 HSPs)
chr4 (8-235)||(49340914-49341141)
chr4 (16-285)||(49352246-49352509)
chr4 (308-342)||(30380566-30380600)
[»] chr5 (3 HSPs)
chr5 (10-285)||(32783754-32784029)
chr5 (307-360)||(11637562-11637616)
chr5 (308-360)||(10032265-10032318)
[»] chr7 (5 HSPs)
chr7 (6-268)||(29750655-29750911)
chr7 (8-268)||(29602385-29602639)
chr7 (29-268)||(29743618-29743851)
chr7 (308-342)||(21327532-21327566)
chr7 (308-360)||(42817627-42817679)
[»] chr1 (5 HSPs)
chr1 (8-159)||(35157876-35158027)
chr1 (310-344)||(39387784-39387818)
chr1 (307-344)||(23460510-23460547)
chr1 (308-360)||(27533260-27533313)
chr1 (309-360)||(28455345-28455397)
[»] chr8 (2 HSPs)
chr8 (308-344)||(37872218-37872254)
chr8 (308-344)||(14279562-14279598)
[»] chr3 (1 HSPs)
chr3 (308-360)||(1545187-1545237)
[»] chr2 (3 HSPs)
chr2 (320-360)||(9842205-9842246)
chr2 (308-355)||(4238781-4238829)
chr2 (308-355)||(9547400-9547448)


Alignment Details
Target: chr4 (Bit Score: 200; Significance: 1e-111; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 200; E-Value: 1e-111
Query Start/End: Original strand, 8 - 235
Target Start/End: Complemental strand, 49341141 - 49340914
Alignment:
Q  8 atatcatcttttaagagtagagaactccccaatgttcttagggccaaaggaagccctccacatttttgtacaatttctttcccaatctccatcaattctg 107  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  49341141 atatcatcttttaagaatagagaactccccaatgttcttagggccaaaggaagccctccacatttttgtacaatttctttcccaatctccatcaattttg 49341042  T
Q  108 gatagttcttctcttctccctcttcaaaagcccatttgacaaatacaaacaaggaatccwmtcwaarwwgrcyctccaattccaaaatgtatgatgtgtt 207  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||  || ||   | | |||||||||||||||||||||||||||    
T  49341041 gatagttcttctcttctccctcttcaaaagcccatttgacaaatacagacaaggaatcctctctaaaaagaccctccaattccaaaatgtatgatgtgtt 49340942  T
Q  208 gatgcccatcattttggcaattgagtgg 235  Q
    ||||||||||||||||||||||||||||    
T  49340941 gatgcccatcattttggcaattgagtgg 49340914  T

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Target: chr4; HSP #2
Raw Score: 153; E-Value: 3e-82
Query Start/End: Original strand, 16 - 285
Target Start/End: Complemental strand, 49352509 - 49352246
Alignment:
Q  16 ttttaagagtagagaactccccaatgttcttagggccaaaggaagccctccacatttttgtacaatttctttcccaatctccatcaattctggatagttc 115  Q
    |||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||     
T  49352509 ttttaagaatagagaactccctaatgttcttagggccaaaggaagccctccacatttttgtacaatttctttcccaatctccaccaattctggatatttt 49352410  T
Q  116 ttctcttctccctcttcaaaagcccatttgacaaatacaaacaaggaatccwmtcwaarwwgrcyctccaattccaaaatgtatgatgtgttgatgccca 215  Q
    ||||||||| |||||| |||||||||||||||||| ||| | |||||||||  |  |    | |       |||||||||||||||||||||| ||||||    
T  49352409 ttctcttcttcctctttaaaagcccatttgacaaacacagataaggaatcctctagagaaagacc------ttccaaaatgtatgatgtgttggtgccca 49352316  T
Q  216 tcattttggcaattgagtggctacgtgtagtcactaagactttacttccttcaacagctacttttattaa 285  Q
    |||||||||||||||||||||||||||||||||| |||||||||||| ||||| |  |||||| ||||||    
T  49352315 tcattttggcaattgagtggctacgtgtagtcaccaagactttactttcttcagcgcctacttgtattaa 49352246  T

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Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 308 - 342
Target Start/End: Complemental strand, 30380600 - 30380566
Alignment:
Q  308 tggtggtcggagttcgaaccccaaaccttgcatat 342  Q
    ||||||||||| |||||||||||||||||||||||    
T  30380600 tggtggtcggaattcgaaccccaaaccttgcatat 30380566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 186; Significance: 1e-102; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 186; E-Value: 1e-102
Query Start/End: Original strand, 10 - 285
Target Start/End: Original strand, 32783754 - 32784029
Alignment:
Q  10 atcatcttttaagagtagagaactccccaatgttcttagggccaaaggaagccctccacatttttgtacaatttctttcccaatctccatcaattctgga 109  Q
    |||| |||||| || ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  32783754 atcaacttttaggaatagagaactccccgatgttcttagggccaaaggaagccctccacatttttgtacaatttctttcccaatcttcatcaattctgga 32783853  T
Q  110 tagttcttctcttctccctcttcaaaagcccatttgacaaatacaaacaaggaatccwmtcwaarwwgrcyctccaattccaaaatgtatgatgtgttga 209  Q
    ||||| |||||||||||||||| |||||||||||||| ||||||| |||||||||||     |    | |  | |||||||||||||||||||||||||     
T  32783854 tagtttttctcttctccctctttaaaagcccatttgataaatacagacaaggaatcctccggagaaagacctttcaattccaaaatgtatgatgtgttgg 32783953  T
Q  210 tgcccatcattttggcaattgagtggctacgtgtagtcactaagactttacttccttcaacagctacttttattaa 285  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||| ||||||    
T  32783954 tgcccatcattttggcaattgagtggctacgtgtagtcactaagactttacttccttcagcacctacttgtattaa 32784029  T

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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 307 - 360
Target Start/End: Original strand, 11637562 - 11637616
Alignment:
Q  307 atggtggtcggagttcgaaccccaaaccttgcata-tttgtgcattgtccctacc 360  Q
    ||||||||||| ||||||||||| ||||||||||| ||| |||||||||| ||||    
T  11637562 atggtggtcggggttcgaaccccgaaccttgcatattttatgcattgtccatacc 11637616  T

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Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 308 - 360
Target Start/End: Original strand, 10032265 - 10032318
Alignment:
Q  308 tggtggtcggagttcgaaccccaaaccttgcatat-ttgtgcattgtccctacc 360  Q
    |||||| |||||||| ||||||||||||||||||| || |||||||||| ||||    
T  10032265 tggtggccggagttcaaaccccaaaccttgcatatgttatgcattgtccatacc 10032318  T

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Target: chr7 (Bit Score: 136; Significance: 5e-72; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 136; E-Value: 5e-72
Query Start/End: Original strand, 6 - 268
Target Start/End: Complemental strand, 29750911 - 29750655
Alignment:
Q  6 caatatcatcttttaagagtagagaactccccaatgttcttagggccaaaggaagccctccacatttttgtacaatttctttcccaatctccatcaattc 105  Q
    ||||||||||||||||||  |  ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||     
T  29750911 caatatcatcttttaagaacaatgaactccccaatgttcttagggccaaaggaagccctccacatttttgaacaatttctttcccaatctctatcaattt 29750812  T
Q  106 tggatagttcttctcttctccctcttcaaaagcccatttgacaaatacaaacaaggaatccwmtcwaarwwgrcyctccaattccaaaatgtatgatgtg 205  Q
    |||||| || |||||||||||||||| ||| |||||||||||||||||| |||||||||||  || |    | |       || |||| |||| ||||||    
T  29750811 tggatattttttctcttctccctctttaaatgcccatttgacaaatacagacaaggaatcctctctagaaagacc------ttgcaaagtgtaagatgtg 29750718  T
Q  206 ttgatgcccatcattttggcaattgagtggctacgtgtagtcactaagactttacttccttca 268  Q
    ||  ||| ||||||||| ||||||||||| ||||||||||||||||| |||||||||||||||    
T  29750717 tttgtgcacatcattttagcaattgagtgactacgtgtagtcactaaaactttacttccttca 29750655  T

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Target: chr7; HSP #2
Raw Score: 130; E-Value: 2e-68
Query Start/End: Original strand, 8 - 268
Target Start/End: Original strand, 29602385 - 29602639
Alignment:
Q  8 atatcatcttttaagagtagagaactccccaatgttcttagggccaaaggaagccctccacatttttgtacaatttctttcccaatctccatcaattctg 107  Q
    ||||||||||||||||  |   |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||| ||    
T  29602385 atatcatcttttaagaacaataaactccccaatgttcttagggccaaaggaagccctccacatttttgaacaatttctttcccaatctctatcaattttg 29602484  T
Q  108 gatagttcttctcttctccctcttcaaaagcccatttgacaaatacaaacaaggaatccwmtcwaarwwgrcyctccaattccaaaatgtatgatgtgtt 207  Q
    |||| || |||||||||||||||| ||| |||||||||||||||||| |||||||||||  || |    | |       || |||| |||| ||||||||    
T  29602485 gatattttttctcttctccctctttaaatgcccatttgacaaatacagacaaggaatcctctctagaaagacc------ttgcaaagtgtaagatgtgtt 29602578  T
Q  208 gatgcccatcattttggcaattgagtggctacgtgtagtcactaagactttacttccttca 268  Q
      ||| ||||||||| ||||||||||| ||||||||||||||||| |||||||||||||||    
T  29602579 tgtgcacatcattttagcaattgagtgactacgtgtagtcactaaaactttacttccttca 29602639  T

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Target: chr7; HSP #3
Raw Score: 125; E-Value: 2e-65
Query Start/End: Original strand, 29 - 268
Target Start/End: Complemental strand, 29743851 - 29743618
Alignment:
Q  29 gaactccccaatgttcttagggccaaaggaagccctccacatttttgtacaatttctttcccaatctccatcaattctggatagttcttctcttctccct 128  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||| |||||| || || ||||||||||    
T  29743851 gaactccccaatgttcttagggccaaaggaagccctccacatttttgcacaatttctttcccaatctctatcaattttggatattttttgtcttctccct 29743752  T
Q  129 cttcaaaagcccatttgacaaatacaaacaaggaatccwmtcwaarwwgrcyctccaattccaaaatgtatgatgtgttgatgcccatcattttggcaat 228  Q
    ||| ||| |||||||||||||||||| |||||||||||  || |    | |       ||||||| |||||||||| ||  ||| ||||||||  |||||    
T  29743751 ctttaaatgcccatttgacaaatacagacaaggaatcctttctagagagacc------ttccaaagtgtatgatgtatttgtgcacatcatttcagcaat 29743658  T
Q  229 tgagtggctacgtgtagtcactaagactttacttccttca 268  Q
    |||||||||||||||||||||||| |||||||||||||||    
T  29743657 tgagtggctacgtgtagtcactaaaactttacttccttca 29743618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 308 - 342
Target Start/End: Original strand, 21327532 - 21327566
Alignment:
Q  308 tggtggtcggagttcgaaccccaaaccttgcatat 342  Q
    |||||||||||||| ||||||||||||||||||||    
T  21327532 tggtggtcggagtttgaaccccaaaccttgcatat 21327566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 308 - 360
Target Start/End: Complemental strand, 42817679 - 42817627
Alignment:
Q  308 tggtggtcggagttcgaaccccaaaccttgcatatttgtgcattgtccctacc 360  Q
    |||||| ||| ||| |||||||| ||||||||||||| |||||||||| ||||    
T  42817679 tggtggccggggtttgaaccccataccttgcatatttatgcattgtccttacc 42817627  T

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Target: chr1 (Bit Score: 68; Significance: 7e-31; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 68; E-Value: 7e-31
Query Start/End: Original strand, 8 - 159
Target Start/End: Complemental strand, 35158027 - 35157876
Alignment:
Q  8 atatcatcttttaagagtagagaactccccaatgttcttagggccaaaggaagccctccacatttttgtacaatttctttcccaatctccatcaattctg 107  Q
    |||||| |||||||||  || |||||||||||||| ||||||||||| |||||||||||||||||  | ||||| ||||| ||||||||||| | ||| |    
T  35158027 atatcaacttttaagaacagcgaactccccaatgtccttagggccaatggaagccctccacatttaagcacaatatcttttccaatctccattagttcag 35157928  T
Q  108 gatagttcttctcttctccctcttcaaaagcccatttgacaaatacaaacaa 159  Q
    |||  ||  ||||||||||||||| |||||||||||| ||||||||| ||||    
T  35157927 gatgtttactctcttctccctctttaaaagcccattttacaaatacagacaa 35157876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 310 - 344
Target Start/End: Original strand, 39387784 - 39387818
Alignment:
Q  310 gtggtcggagttcgaaccccaaaccttgcatattt 344  Q
    |||||||||||||||||||||||||||||||||||    
T  39387784 gtggtcggagttcgaaccccaaaccttgcatattt 39387818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 307 - 344
Target Start/End: Complemental strand, 23460547 - 23460510
Alignment:
Q  307 atggtggtcggagttcgaaccccaaaccttgcatattt 344  Q
    |||||||||||| |||||||| ||||||||||||||||    
T  23460547 atggtggtcggaattcgaacctcaaaccttgcatattt 23460510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 308 - 360
Target Start/End: Complemental strand, 27533313 - 27533260
Alignment:
Q  308 tggtggtcggagttcgaaccccaaaccttgcatat-ttgtgcattgtccctacc 360  Q
    |||||||||| ||| ||||||| |||||||||||| || |||||||||||||||    
T  27533313 tggtggtcggggtttgaaccccgaaccttgcatatattatgcattgtccctacc 27533260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 309 - 360
Target Start/End: Original strand, 28455345 - 28455397
Alignment:
Q  309 ggtggtcggagttcgaaccccaaaccttgcatat-ttgtgcattgtccctacc 360  Q
    |||||||||| |||||||||||||| |||||||| || ||||||||| |||||    
T  28455345 ggtggtcggaattcgaaccccaaactttgcatatattatgcattgtctctacc 28455397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 37; Significance: 0.000000000004; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000004
Query Start/End: Original strand, 308 - 344
Target Start/End: Complemental strand, 37872254 - 37872218
Alignment:
Q  308 tggtggtcggagttcgaaccccaaaccttgcatattt 344  Q
    |||||||||||||||||||||||||||||||||||||    
T  37872254 tggtggtcggagttcgaaccccaaaccttgcatattt 37872218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 308 - 344
Target Start/End: Original strand, 14279562 - 14279598
Alignment:
Q  308 tggtggtcggagttcgaaccccaaaccttgcatattt 344  Q
    |||||||| ||||||||||||| ||||||||||||||    
T  14279562 tggtggtcagagttcgaaccccgaaccttgcatattt 14279598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 308 - 360
Target Start/End: Original strand, 1545187 - 1545237
Alignment:
Q  308 tggtggtcggagttcgaaccccaaaccttgcatatttgtgcattgtccctacc 360  Q
    |||||||||| ||||||||| ||||||||||  |||| |||||||||||||||    
T  1545187 tggtggtcggggttcgaacctcaaaccttgc--atttatgcattgtccctacc 1545237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 30; Significance: 0.00000007; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 320 - 360
Target Start/End: Original strand, 9842205 - 9842246
Alignment:
Q  320 ttcgaaccccaaaccttgcata-tttgtgcattgtccctacc 360  Q
    |||||||||||||||||||||| ||| |||||||||||||||    
T  9842205 ttcgaaccccaaaccttgcatattttatgcattgtccctacc 9842246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 308 - 355
Target Start/End: Complemental strand, 4238829 - 4238781
Alignment:
Q  308 tggtggtcggagttcgaaccccaaaccttgcatat-ttgtgcattgtcc 355  Q
    |||||||||||||||||||||| |||||| ||||| || ||||||||||    
T  4238829 tggtggtcggagttcgaaccccgaaccttacatatattatgcattgtcc 4238781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 308 - 355
Target Start/End: Original strand, 9547400 - 9547448
Alignment:
Q  308 tggtggtcggagttcgaaccccaaaccttgcatat-ttgtgcattgtcc 355  Q
    |||||||||| ||| |||||||||||||||||||| || ||||||||||    
T  9547400 tggtggtcggggtttgaaccccaaaccttgcatatattatgcattgtcc 9547448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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