View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2966-Insertion-33 (Length: 252)

Name: NF2966-Insertion-33
Description: NF2966
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2966-Insertion-33
NF2966-Insertion-33
[»] chr2 (16 HSPs)
chr2 (8-252)||(8578748-8578992)
chr2 (59-252)||(8577697-8577889)
chr2 (7-183)||(7612647-7612823)
chr2 (7-114)||(9060320-9060427)
chr2 (7-96)||(9329437-9329526)
chr2 (7-67)||(9321858-9321918)
chr2 (38-89)||(9283427-9283478)
chr2 (7-95)||(9275362-9275450)
chr2 (7-95)||(9316864-9316952)
chr2 (7-86)||(10348651-10348730)
chr2 (33-99)||(9365430-9365496)
chr2 (7-96)||(9292766-9292855)
chr2 (12-89)||(10372727-10372804)
chr2 (32-101)||(14551152-14551221)
chr2 (35-99)||(8572751-8572815)
chr2 (7-99)||(12018136-12018228)
[»] chr8 (1 HSPs)
chr8 (36-95)||(41965973-41966032)
[»] chr5 (1 HSPs)
chr5 (7-96)||(36225588-36225677)
[»] scaffold0667 (1 HSPs)
scaffold0667 (7-67)||(5326-5386)
[»] chr3 (1 HSPs)
chr3 (7-67)||(37463389-37463449)
[»] chr1 (1 HSPs)
chr1 (20-101)||(29467060-29467141)


Alignment Details
Target: chr2 (Bit Score: 229; Significance: 1e-126; HSPs: 16)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 8 - 252
Target Start/End: Original strand, 8578748 - 8578992
Alignment:
Q  8 atcctctcccgcttacccgtacagtcccttctccgattccgatcaatttctaaatcacttcgatccttcatagattcccacaccttcaccaaacattact 107  Q
    ||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  8578748 atcctctcccgcttaccggtacaatcccttctccgattccgatcaatttctaaatcacttcgatccttcatagattcccacaccttcaccaaacattacc 8578847  T
Q  108 tcaaaaactccttcagtatcaagatcatcctccgccgcaactatgatctctaccaacttgatttctctaatctaacaacccacgttaaattctccgttcc 207  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8578848 tcaaaaactccttcagtatcaagatcatcctccgccacaactatgatctctaccaacttgatttctctaatctaacaacccacgttaaattctccgttcc 8578947  T
Q  208 tttaaacatcaatttatttaaccctaatattgatcttctcggtgg 252  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  8578948 tttaaacatcaatttatttaaccctaatattgatcttctcggtgg 8578992  T

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Target: chr2; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 59 - 252
Target Start/End: Original strand, 8577697 - 8577889
Alignment:
Q  59 aaatcacttcgatccttcatagattcccacaccttcaccaaacattacttcaaaaactccttcagtatcaagatcatcctccgccgcaactatgatctct 158  Q
    |||||| || ||||||| || |||||||||| ||||| |||   |||| ||||||||||| ||||| ||||  | |||||| ||| |||||  |||||||    
T  8577697 aaatcaatttgatccttaattgattcccacaacttcatcaacttttacctcaaaaactccctcagtttcaattttatcctctgccacaactccgatctct 8577796  T
Q  159 accaacttgatttctctaatctaacaacccacgttaaattctccgttcctttaaacatcaatttatttaaccctaatattgatcttctcggtgg 252  Q
    |||||||||||||| |||||||||| |||||||||||| ||  |  ||||||| ||||||||||||  |||||||| ||||||||||| |||||    
T  8577797 accaacttgatttccctaatctaaccacccacgttaaa-tccgcaatcctttagacatcaatttatggaaccctaaaattgatcttcttggtgg 8577889  T

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Target: chr2; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 7 - 183
Target Start/End: Complemental strand, 7612823 - 7612647
Alignment:
Q  7 aatcctctcccgcttacccgtacagtcccttctccgattccgatcaatttctaaatcacttcgatccttcatagattcccacaccttcaccaaacattac 106  Q
    ||||||||| |||||||| |||||  |||| |||||||||||||||||||||||||| |||  |||||| || |||||||||| |||||| || | | ||    
T  7612823 aatcctctctcgcttaccggtacaaaccctcctccgattccgatcaatttctaaatcgcttaaatccttaattgattcccacaacttcacaaaccttcac 7612724  T
Q  107 ttcaaaaactccttcagtatcaagatcatcctccgccgcaactatgatctctaccaacttgatttctctaatctaac 183  Q
     |||||||||| || | | ||||  || || |  |||||||||  ||  |||||||| |||||||| ||||||||||    
T  7612723 ctcaaaaactctttaaatttcaacctcgtcttatgccgcaactccgaattctaccaaattgatttccctaatctaac 7612647  T

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Target: chr2; HSP #4
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 7 - 114
Target Start/End: Original strand, 9060320 - 9060427
Alignment:
Q  7 aatcctctcccgcttacccgtacagtcccttctccgattccgatcaatttctaaatcacttcgatccttcatagattcccacaccttcaccaaacattac 106  Q
    |||| ||||||||||||| || || || ||||||||||||||||||| ||| |||||||||  |||||| || ||||| |||| |||||| || | ||||    
T  9060320 aatcttctcccgcttaccggttcaatcacttctccgattccgatcaacttcaaaatcacttaaatccttaatcgattctcacaacttcactaacctttac 9060419  T
Q  107 ttcaaaaa 114  Q
     |||||||    
T  9060420 ctcaaaaa 9060427  T

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Target: chr2; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 7 - 96
Target Start/End: Complemental strand, 9329526 - 9329437
Alignment:
Q  7 aatcctctcccgcttacccgtacagtcccttctccgattccgatcaatttctaaatcacttcgatccttcatagattcccacaccttcac 96  Q
    |||||||||||||||||| ||| | || |||||||||||||| |||| ||| |||||||||  |||| | || |||||||||| ||||||    
T  9329526 aatcctctcccgcttaccggtaaaatcacttctccgattccgttcaacttcaaaatcacttaaatccataatcgattcccacaacttcac 9329437  T

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Target: chr2; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 7 - 67
Target Start/End: Complemental strand, 9321918 - 9321858
Alignment:
Q  7 aatcctctcccgcttacccgtacagtcccttctccgattccgatcaatttctaaatcactt 67  Q
    |||||||||||||||||| ||| | || ||||||| ||||||||||| |||||||||||||    
T  9321918 aatcctctcccgcttaccggtaaaatcacttctccaattccgatcaacttctaaatcactt 9321858  T

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Target: chr2; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 38 - 89
Target Start/End: Original strand, 9283427 - 9283478
Alignment:
Q  38 ctccgattccgatcaatttctaaatcacttcgatccttcatagattcccaca 89  Q
    |||||||||||||||| ||||||||||||||||||| | |||||||| ||||    
T  9283427 ctccgattccgatcaacttctaaatcacttcgatccctaatagattctcaca 9283478  T

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Target: chr2; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 7 - 95
Target Start/End: Complemental strand, 9275450 - 9275362
Alignment:
Q  7 aatcctctcccgcttacccgtacagtcccttctccgattccgatcaatttctaaatcacttcgatccttcatagattcccacaccttca 95  Q
    |||| ||||||| ||||| ||||| || |||||| ||||||||||||| || |||||||||  ||| || || |||||||||| |||||    
T  9275450 aatcttctcccggttaccagtacaatcacttctctgattccgatcaatctcaaaatcacttaaatcgttgattgattcccacaacttca 9275362  T

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Target: chr2; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 7 - 95
Target Start/End: Complemental strand, 9316952 - 9316864
Alignment:
Q  7 aatcctctcccgcttacccgtacagtcccttctccgattccgatcaatttctaaatcacttcgatccttcatagattcccacaccttca 95  Q
    |||| |||||| |||||| ||| | || ||||||||||||||||||| ||| |||||||||  ||| || |||||||| |||| |||||    
T  9316952 aatcttctcccacttaccagtaaaatcacttctccgattccgatcaacttcaaaatcacttaaatctttaatagattctcacaacttca 9316864  T

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Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 7 - 86
Target Start/End: Complemental strand, 10348730 - 10348651
Alignment:
Q  7 aatcctctcccgcttacccgtacagtcccttctccgattccgatcaatttctaaatcacttcgatccttcatagattccc 86  Q
    |||| ||||||||||||| ||| | || |||||||||||||||||||  || |||||||||  |||||| || |||||||    
T  10348730 aatcttctcccgcttaccggtaaaatcacttctccgattccgatcaacctcaaaatcacttaaatccttaatcgattccc 10348651  T

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Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 33 - 99
Target Start/End: Complemental strand, 9365496 - 9365430
Alignment:
Q  33 cccttctccgattccgatcaatttctaaatcacttcgatccttcatagattcccacaccttcaccaa 99  Q
    |||||||||||||||||||||  || |||||||||  |||| | || ||||| ||||||||||||||    
T  9365496 cccttctccgattccgatcaacctcaaaatcacttaaatccataatcgattctcacaccttcaccaa 9365430  T

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Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 7 - 96
Target Start/End: Complemental strand, 9292855 - 9292766
Alignment:
Q  7 aatcctctcccgcttacccgtacagtcccttctccgattccgatcaatttctaaatcacttcgatccttcatagattcccacaccttcac 96  Q
    |||| |||||||| |||| ||| | || |||||| |||||||||||||||| |||||||||  |||| | || ||||| |||| ||||||    
T  9292855 aatcttctcccgcgtaccagtaaaatcacttctcagattccgatcaatttcaaaatcacttaaatccctaatcgattctcacagcttcac 9292766  T

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Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 12 - 89
Target Start/End: Complemental strand, 10372804 - 10372727
Alignment:
Q  12 tctcccgcttacccgtacagtcccttctccgattccgatcaatttctaaatcacttcgatccttcatagattcccaca 89  Q
    ||||||||||||| ||| | || ||||||||||||||||||| ||| |||||| ||  ||| || || ||||||||||    
T  10372804 tctcccgcttaccggtaaaatcacttctccgattccgatcaacttcaaaatcatttaaatcattaatcgattcccaca 10372727  T

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Target: chr2; HSP #14
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 32 - 101
Target Start/End: Complemental strand, 14551221 - 14551152
Alignment:
Q  32 tcccttctccgattccgatcaatttctaaatcacttcgatccttcatagattcccacaccttcaccaaac 101  Q
    ||||| |||| ||||||||||| ||| |||||||||| |||| | || |||||||||| ||||| |||||    
T  14551221 tccctcctccaattccgatcaacttcaaaatcacttcaatccctaatcgattcccacaacttcatcaaac 14551152  T

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Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 35 - 99
Target Start/End: Original strand, 8572751 - 8572815
Alignment:
Q  35 cttctccgattccgatcaatttctaaatcacttcgatccttcatagattcccacaccttcaccaa 99  Q
    ||||||||||||||||||| ||| |||||||||  |||  | || |||||||||| |||||||||    
T  8572751 cttctccgattccgatcaacttcaaaatcacttaaatctataatcgattcccacaacttcaccaa 8572815  T

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Target: chr2; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 7 - 99
Target Start/End: Original strand, 12018136 - 12018228
Alignment:
Q  7 aatcctctcccgcttacccgtacagtcccttctccgattccgatcaatttctaaatcacttcgatccttcatagattcccacaccttcaccaa 99  Q
    |||| ||||||||||||| ||| | || ||||| |||||||| |||| ||| |||||||||  |||| | || ||||| |||| |||||||||    
T  12018136 aatcttctcccgcttaccagtaaaatcacttcttcgattccgctcaacttcaaaatcacttaaatccataatcgattctcacaacttcaccaa 12018228  T

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Target: chr8 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 36 - 95
Target Start/End: Original strand, 41965973 - 41966032
Alignment:
Q  36 ttctccgattccgatcaatttctaaatcacttcgatccttcatagattcccacaccttca 95  Q
    ||||||||||||||||||  || ||||||||||||||||| || |||||||||| |||||    
T  41965973 ttctccgattccgatcaacctcgaaatcacttcgatccttaatcgattcccacaacttca 41966032  T

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Target: chr5 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 7 - 96
Target Start/End: Complemental strand, 36225677 - 36225588
Alignment:
Q  7 aatcctctcccgcttacccgtacagtcccttctccgattccgatcaatttctaaatcacttcgatccttcatagattcccacaccttcac 96  Q
    |||||||||||||||||  || || ||||| |||||||||||||||| ||| |||||||||  ||| || || ||||| |||| ||||||    
T  36225677 aatcctctcccgcttactagtgcaatccctcctccgattccgatcaacttcaaaatcacttaaatcgttaatcgattcgcacaacttcac 36225588  T

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Target: scaffold0667 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0667
Description:

Target: scaffold0667; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 7 - 67
Target Start/End: Complemental strand, 5386 - 5326
Alignment:
Q  7 aatcctctcccgcttacccgtacagtcccttctccgattccgatcaatttctaaatcactt 67  Q
    |||| ||||||||||||| ||| | || ||||||||||||||||||| ||| |||||||||    
T  5386 aatcttctcccgcttaccggtaaaatcacttctccgattccgatcaacttcaaaatcactt 5326  T

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Target: chr3 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 7 - 67
Target Start/End: Complemental strand, 37463449 - 37463389
Alignment:
Q  7 aatcctctcccgcttacccgtacagtcccttctccgattccgatcaatttctaaatcactt 67  Q
    |||||||||||| ||||| ||| | || ||||||||||||||||||| ||| |||||||||    
T  37463449 aatcctctcccgtttaccagtagaatcacttctccgattccgatcaacttcaaaatcactt 37463389  T

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Target: chr1 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 20 - 101
Target Start/End: Original strand, 29467060 - 29467141
Alignment:
Q  20 ttacccgtacagtcccttctccgattccgatcaatttctaaatcacttcgatccttcatagattcccacaccttcaccaaac 101  Q
    ||||| ||||| ||||| ||||||||||| ||||  || |||||||||| |||| | || |||||||||| ||||| |||||    
T  29467060 ttaccggtacaatccctcctccgattccgttcaacctcaaaatcacttcaatccctaatcgattcccacaacttcatcaaac 29467141  T

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