View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2966-Insertion-34 (Length: 157)
Name: NF2966-Insertion-34
Description: NF2966
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2966-Insertion-34 |
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| [»] scaffold0003 (2 HSPs) |
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Alignment Details
Target: scaffold0003 (Bit Score: 51; Significance: 1e-20; HSPs: 2)
Name: scaffold0003
Description:
Target: scaffold0003; HSP #1
Raw Score: 51; E-Value: 1e-20
Query Start/End: Original strand, 8 - 69
Target Start/End: Complemental strand, 360758 - 360696
Alignment:
| Q |
8 |
atttcgtcttgcttt-acttacgttatttttagggtttgttttggcattctttgttggttgta |
69 |
Q |
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| T |
360758 |
atttcgtcttgcttttacttacgttatttttagggtttgctttggcattctttgttggttgta |
360696 |
T |
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Target: scaffold0003; HSP #2
Raw Score: 32; E-Value: 0.000000003
Query Start/End: Original strand, 79 - 110
Target Start/End: Complemental strand, 360666 - 360635
Alignment:
| Q |
79 |
gttgctttacttgctttaatatcagggtttgc |
110 |
Q |
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| T |
360666 |
gttgctttacttgctttaatatcagggtttgc |
360635 |
T |
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