View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2966-Insertion-4 (Length: 844)

Name: NF2966-Insertion-4
Description: NF2966
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2966-Insertion-4
NF2966-Insertion-4
[»] chr2 (6 HSPs)
chr2 (8-835)||(18729973-18730800)
chr2 (35-746)||(18732773-18733481)
chr2 (431-784)||(18735735-18736088)
chr2 (434-742)||(18743197-18743505)
chr2 (130-362)||(18735353-18735582)
chr2 (369-414)||(18735577-18735622)


Alignment Details
Target: chr2 (Bit Score: 727; Significance: 0; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 727; E-Value: 0
Query Start/End: Original strand, 8 - 835
Target Start/End: Original strand, 18729973 - 18730800
Alignment:
Q  8 aattgaccgtgaactaactcctgtaaaaattgtcactcctagatccaatttggatctggattcttgtcatggtttcgaatattctaaaactatccgtaac 107  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||    
T  18729973 aattgacagtgaactaactcctgtaaaaattgtcactcctagatccaatttggatctggattcttgtcatggtttcaaatattcaaaaactatccgtaac 18730072  T
Q  108 ccgacccacttgaatataactccttagaaattccacaagaacaggtctggaattaccaacccatccatattctcttctacataatcaaaatctggcatct 207  Q
    ||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18730073 ccgacccacttgaatatcactccttagaaattccacaagaaaaggtctggaattaccaacccatccatattctcttctacataatcaaaatctggcatct 18730172  T
Q  208 ccggcacgtagaaatcgtgnnnnnnntcatcatcaaaacccggaaagatagagcaacccgatccagtttctaaaaacatgtccgaaaataacccgttttc 307  Q
    |||||||||||||||||||       |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18730173 ccggcacgtagaaatcgtgacaaaaatcatcatcaaaacccggaaacatagagcaacccgatccagtttctaaaaacatgtccgaaaataacccgttttc 18730272  T
Q  308 cttggagtcacaatctgtctgaaccgtcacatcggatagagcaggagacggcaactccatagacaacaatgttgttgccgtcccctccaatgatgacggt 407  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||    
T  18730273 cttggagtcacaatctgtctgaaccgtcacatcggatagagcaggagacggcaactccatagacaacaatgttgttgtcgtcccctccgatgatgacggt 18730372  T
Q  408 gtttcaaacgaagtcttttcgggttgacccgaattagcaaaagaagctgcagcggtcttaatctcagaatgtgtcatggaccttcctccggcaatgtacg 507  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |  |    
T  18730373 gtttcaaacgaagtcttttcgagttgacccgaattagcaaaagaagctgcagcggtcttaatctcagaatgtgtcatggaccttcctcctgcaatttctg 18730472  T
Q  508 gaggatcattaggaaaattaaacttagcaccactgccacgtaagcaaaacatagccgcatcaaatgcacgcgccgccttcacggctgagtcgtaagaacc 607  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||| ||||||||||||||||||||    
T  18730473 gaggatcattaggtaaattaaacttagcaccactgccacgtaagcaaaacatagccgcttctaatgcacgcgccgcctttacggctgagtcgtaagaacc 18730572  T
Q  608 taaccatattctttggcggctgtttggtagtctgatttcagacacatattttccccacttcctcttccttacacctctatacattgaagaatcacttctt 707  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  18730573 taaccatattctttggcggctgtttggtagtctgatttcagacacatactttccccacttcctcttccttactcctctatacattgaagaatcacttctt 18730672  T
Q  708 tccgcagcagttttttccacatttgatttcaccatatttactctttaggatataagaaaataattacacaaacactttaaacgtatagaaatgttgtgtt 807  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18730673 tccgcagcagttttttctacatttgatttcaccatatttactctttaggatataagaaaataattacacaaacactttaaacgtatagaaatgttgtgtt 18730772  T
Q  808 ctttttgttagaagtgaaagttgttgtt 835  Q
    ||||||||||||||||||||||||||||    
T  18730773 ctttttgttagaagtgaaagttgttgtt 18730800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 512; E-Value: 0
Query Start/End: Original strand, 35 - 746
Target Start/End: Original strand, 18732773 - 18733481
Alignment:
Q  35 aattgtcactcctagatccaatttggatctggattcttgtcatggtttcgaatattctaaaactatccgtaacccgacccacttgaatataactccttag 134  Q
    ||||| ||||| |||||||||| |||| | || ||||||||  ||||||| |||| ||||||||||||| ||||||||| |||||||||| | | |||||    
T  18732773 aattggcactcgtagatccaatgtggacccgggttcttgtcgcggtttcggatatactaaaactatccgcaacccgaccaacttgaatatcatttcttag 18732872  T
Q  135 aaattccacaagaacaggtctggaattaccaacccatccatattctcttctacataatcaaaatctggcatctccggcacgtagaaatcgtgnnnnnnnt 234  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||              
T  18732873 aaattccacaagaacaggtctggaattaccaacccatccatgttctcttctacataatcaaaatctgacatctccggcacgtagaaatcgccacaaaa-- 18732970  T
Q  235 catcatcaaaacccggaaagatagagcaacccgatccagtttctaaaaacatgtccgaaaataacccgttttccttggagtcacaatctgtctgaaccgt 334  Q
     |||||||||||||||||| |||||| |||| || || |||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  18732971 -atcatcaaaacccggaaacatagagtaacctgacccggtttctgaaaacatgtccgaaaataacccgttttccttggagttacaatctgtctgaaccgt 18733069  T
Q  335 cacatcggatagagcaggagacggcaactccatagacaacaatgttgttgccgtcccctccaatgatgacggtgtttcaaacgaagtcttttcgggttga 434  Q
    ||||||||||||||||||||||  ||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||| ||| ||||||||||||    
T  18733070 cacatcggatagagcaggagacaacaactccatagacaacaatgttgttgcagtcccctccgatgatgacggtgtttcaaacggagtattttcgggttga 18733169  T
Q  435 cccgaattagcaaaagaagctgcagcggtcttaatctcagaatgtgtcatggaccttcctccggcaatgtacggaggatcattaggaaaattaaacttag 534  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  18733170 cccgaattagcaaaagaagctgcagcggtcttaatctcagcatgtgtcatggatcttcctccggcaatgtacggaggatcattaggaaaattaaacttag 18733269  T
Q  535 caccactgccacgtaagcaaaacatagccgcatcaaatgcacgcgccgccttcacggctgagtcgtaagaacctaaccatattctttggcggctgtttgg 634  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  18733270 caccactgccacgtaagcaaaacatagccgcatcaaatgcacgcgccgcctttacggctgagtcgtaagaacctaaccatattctttggcggctgtttgg 18733369  T
Q  635 tagtctgatttcagacacatattttccccacttcctcttccttacacctctatacattgaagaatcacttctttccgcagcagttttttccacatttgat 734  Q
    ||||||||||||||||||||| |||||||| |||||||||||||| |||||||||| |||||||||||||| |||| | |||||||||||||||||||||    
T  18733370 tagtctgatttcagacacatactttccccatttcctcttccttactcctctatacaatgaagaatcacttcgttccaccgcagttttttccacatttgat 18733469  T
Q  735 ttcaccatattt 746  Q
    ||||||||||||    
T  18733470 ttcaccatattt 18733481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 431 - 784
Target Start/End: Original strand, 18735735 - 18736088
Alignment:
Q  431 ttgacccgaattagcaaaagaagctgcagcggtcttaatctcagaatgtgtcatggaccttcctccggcaatgtacggaggatcattaggaaaattaaac 530  Q
    |||||||||||| ||||||   ||||| |||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||    
T  18735735 ttgacccgaattggcaaaacgggctgccgcggtcttaatctcagaatgtgtcatggaccttcctccggcaatctccggaggatcattaggaaaattaaac 18735834  T
Q  531 ttagcaccactgccacgtaagcaaaacatagccgcatcaaatgcacgcgccgccttcacggctgagtcgtaagaacctaaccatattctttggcggctgt 630  Q
    |||||||||||||||||||||||||||||||| || || |||||||| |||||||||||| | ||||| || ||||||||||||||||| ||||||||||    
T  18735835 ttagcaccactgccacgtaagcaaaacatagctgcgtcgaatgcacgtgccgccttcacgtcggagtcataggaacctaaccatattctctggcggctgt 18735934  T
Q  631 ttggtagtctgatttcagacacatattttccccacttcctcttccttacacctctatacattgaagaatcacttctttccgcagcagttttttccacatt 730  Q
    |||| || |||||||| ||||||||||| |||||||| ||||||||||| |||||||||| ||||||||||||||||||| | ||| ||||||||| |||    
T  18735935 ttggcagcctgatttctgacacatatttcccccactttctcttccttactcctctatacaatgaagaatcacttctttccaccgcaattttttccatatt 18736034  T
Q  731 tgatttcaccatatttactctttaggatataagaaaataattacacaaacactt 784  Q
     ||||||||||||||||||||||||| ||||||||||||| |||||||||||||    
T  18736035 cgatttcaccatatttactctttagggtataagaaaataagtacacaaacactt 18736088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 117; E-Value: 4e-59
Query Start/End: Original strand, 434 - 742
Target Start/End: Original strand, 18743197 - 18743505
Alignment:
Q  434 acccgaattagcaaaagaagctgcagcggtcttaatctcagaatgtgtcatggaccttcctccggcaatgtacggaggatcattaggaaaattaaactta 533  Q
    ||||||||||||||||   |||||||| |  | |||||||||| | ||||| |  |||||||| |||||||  || ||||||||||| || |||||||||    
T  18743197 acccgaattagcaaaacgggctgcagcagcttgaatctcagaaggagtcattgttcttcctccagcaatgtttggtggatcattagggaagttaaactta 18743296  T
Q  534 gcaccactgccacgtaagcaaaacatagccgcatcaaatgcacgcgccgccttcacggctgagtcgtaagaacctaaccatattctttggcggctgtttg 633  Q
    |||||||||||||||||||||||||| ||||| || || ||||||||||||||| |||| || || |||||||||||||||||||| || ||||||||||    
T  18743297 gcaccactgccacgtaagcaaaacatcgccgcgtcgaaagcacgcgccgccttctcggcagaatcataagaacctaaccatattctctgacggctgtttg 18743396  T
Q  634 gtagtctgatttcagacacatattttccccacttcctcttccttacacctctatacattgaagaatcacttctttccgcagcagttttttccacatttga 733  Q
    ||| ||| || || ||||||||||| |||||||||||||||| ||| || |  |||| ||| |||||||||| ||| |  | || |||||||||||| ||    
T  18743397 gtaatctaatctccgacacatatttcccccacttcctcttccgtactccacggtacaatgatgaatcacttcgttctgtcgtaggtttttccacattcga 18743496  T
Q  734 tttcaccat 742  Q
     ||||||||    
T  18743497 cttcaccat 18743505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 130 - 362
Target Start/End: Original strand, 18735353 - 18735582
Alignment:
Q  130 cttagaaattccacaagaacaggtctggaattaccaacccatccatattctcttctacataatcaaaatctggcatctccggcacgtagaaatcgtgnnn 229  Q
    ||||||||||||| |||||    ||| | |||| |||||||||||| ||||||||| ||||| |||||| || || ||||||||| || ||||||         
T  18735353 cttagaaattccataagaatgaatcttgtattatcaacccatccatgttctcttcttcataagcaaaatttgtcaactccggcacataaaaatcg---cc 18735449  T
Q  230 nnnntcatcatcaaaacccggaaagatagagcaacccgatccagtttctaaaaacatgtccgaaaataacccgttttccttggagtcacaatctgtctga 329  Q
          ||||| |||||||||||| |||| | ||||| | || |||||| |||||| ||||  | | |||||||||||     | |||| ||| || |||    
T  18735450 acaaaaatcataaaaacccggaaacatagtgtaacccaacccggtttctgaaaacaagtccttacacaacccgttttctcctaaatcactatcggtttga 18735549  T
Q  330 accgtcacatcggatagagcaggagacggcaac 362  Q
    ||||||||||| |||||||||||||||| ||||    
T  18735550 accgtcacatcagatagagcaggagacgacaac 18735582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 369 - 414
Target Start/End: Original strand, 18735577 - 18735622
Alignment:
Q  369 gacaacaatgttgttgccgtcccctccaatgatgacggtgtttcaa 414  Q
    |||||||||||||||| ||||||||||||| | || ||||||||||    
T  18735577 gacaacaatgttgttgtcgtcccctccaataaagatggtgtttcaa 18735622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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