View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2966-Insertion-5 (Length: 801)

Name: NF2966-Insertion-5
Description: NF2966
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2966-Insertion-5
NF2966-Insertion-5
[»] chr6 (7 HSPs)
chr6 (318-801)||(12301173-12301656)
chr6 (28-312)||(12243982-12244267)
chr6 (8-205)||(12317729-12317926)
chr6 (72-312)||(12409780-12410021)
chr6 (479-744)||(28560349-28560614)
chr6 (547-668)||(34067276-34067397)
chr6 (550-637)||(20851721-20851808)
[»] chr3 (1 HSPs)
chr3 (314-649)||(18964151-18964487)
[»] chr4 (4 HSPs)
chr4 (481-764)||(19034941-19035224)
chr4 (36-312)||(36745518-36745795)
chr4 (547-637)||(16987097-16987187)
chr4 (564-633)||(35087756-35087825)
[»] chr7 (4 HSPs)
chr7 (154-237)||(23479063-23479147)
chr7 (547-649)||(8850206-8850308)
chr7 (547-637)||(19653947-19654037)
chr7 (38-95)||(23478947-23479004)
[»] chr2 (2 HSPs)
chr2 (154-312)||(7984331-7984490)
chr2 (547-637)||(21808767-21808857)
[»] chr5 (3 HSPs)
chr5 (546-643)||(23957670-23957767)
chr5 (154-279)||(13208142-13208268)
chr5 (547-637)||(36732322-36732412)


Alignment Details
Target: chr6 (Bit Score: 386; Significance: 0; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 386; E-Value: 0
Query Start/End: Original strand, 318 - 801
Target Start/End: Complemental strand, 12301656 - 12301173
Alignment:
Q  318 ataattttgtaaatgtgaaggtggatttattgttccgaaggattttctgataataggttgaggaattggagatataggtgatgcaggctcaagatgaggt 417  Q
    |||||||||||||||||||||| |||||||||||| | |||||||| |||||| |||| |||||||||||||||||||||||||||||||||||||||||    
T  12301656 ataattttgtaaatgtgaaggtagatttattgttctggaggattttttgataaaaggtggaggaattggagatataggtgatgcaggctcaagatgaggt 12301557  T
Q  418 ggaccaggatcaataatggaagttggggaaataataggagtaggtgaactatcagaaggaagattacttgctgagcaagaatcaaaagaaaaatagttcc 517  Q
    |||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||   || ||||||||||||||||||||||||    
T  12301556 ggaccaggatcaataatggaagtttgggaaataataggagttggtgaactatcagaaggaagattacttgtcaagtaagaatcaaaagaaaaatagttcc 12301457  T
Q  518 aagtagtagtgttgaaggatagattatgtggataaggtaaaatatgttcatgaaaattracatgtctagatatgtgtatttctctagaatgaatatctaa 617  Q
    |||||||||||||||||||| ||||| |||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||    
T  12301456 aagtagtagtgttgaaggatggattaggtggataaggtaaaatatgttcataaaaattgacatgtctagatatgtgtatttctctagaatgaatatctaa 12301357  T
Q  618 aaggacaaaacctttgaaactaatagagtaacataagaaaacaaactttctagatctaagggagagttcggatctttgttcttgaagagtagtgaaataa 717  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||     
T  12301356 aaggacaaaacctttgaaaccaatagagtaacataagaaaacaaactttctagatctaagggaaagtttggatctttgttcttgaagagtagtgaaatag 12301257  T
Q  718 cataaataaccaaaaactttaaaagaagtaatgttagggattttattttgtaaaagttgatatggtgatttgttatggagatta 801  Q
    |||||||||  |||||||||||||||||||||||| ||||||||||| ||| ||||||||||||||||||||||||||||||||    
T  12301256 cataaataataaaaaactttaaaagaagtaatgttggggattttattgtgttaaagttgatatggtgatttgttatggagatta 12301173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 250; E-Value: 1e-138
Query Start/End: Original strand, 28 - 312
Target Start/End: Original strand, 12243982 - 12244267
Alignment:
Q  28 aaaaggatatgaaaagtactcacaaaaatgaatcgagctccaagccaaattctttttggagaaggaaatggcatcattagacgaactagaccatatgtag 127  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12243982 aaaaggaaatgaaaagtactcacaaaaatgaatcgagctccaagccaaattctttttggagaaggaaatggcatcattagacgaactagaccatatgtag 12244081  T
Q  128 caacaccaatgaaatggtaaatcaaactcaatggacgagaatttagacctgcgagtagagctaatggtccatctgagaaaacacctccaaggctt-aata 226  Q
    ||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||| |||||||||||||||| |||||||||||||| ||||    
T  12244082 caacaccaatgaaatggtaaagcaaactcaatggacgagaatttagccctgcgagtagagctattggtccatctgagaaatcacctccaaggcttaaata 12244181  T
Q  227 atcaaaacatgcttcatgcatttcctttctagctggatctggagatacacaaattactgtatgcaataaaccagctaatgtgttta 312  Q
    ||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12244182 atcgaaacatgcttcacgcatttcctttctagctggatctggagatacacaaattactgtatgcaataaaccagctaatgtgttta 12244267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 8 - 205
Target Start/End: Complemental strand, 12317926 - 12317729
Alignment:
Q  8 gatcttatatattaaagctaaaaaggatatgaaaagtactcacaaaaatgaatcgagctccaagccaaattctttttggagaaggaaatggcatcattag 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12317926 gatcttatatattaaagctaaaaaggatatgaaaagtactcacaaaaatgaatcgagctccaagccaaattctttttggagaaggaaatggcatcattag 12317827  T
Q  108 acgaactagaccatatgtagcaacaccaatgaaatggtaaatcaaactcaatggacgagaatttagacctgcgagtagagctaatggtccatctgaga 205  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  12317826 acgaactagaccatatgtagcaacaccaatgaaatggtaaagcaaactcaatggacgagaatttagacctgcgagtagagctattggtccatctgaga 12317729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 106; E-Value: 1e-52
Query Start/End: Original strand, 72 - 312
Target Start/End: Complemental strand, 12410021 - 12409780
Alignment:
Q  72 ccaaattctttttggagaaggaaatggcatcattagacgaactagaccatatgtagcaacaccaatgaaatggtaaatcaaactcaatggacgagaattt 171  Q
    |||||||| ||||||||| ||||||||||||||||  ||| ||| |||||||| ||| ||  |||||||||| || | |||| || ||| || ||||||     
T  12410021 ccaaattcgttttggagatggaaatggcatcattaatcgacctacaccatatgcagccaccgcaatgaaatgatacaacaaagtcgatgaactagaatta 12409922  T
Q  172 agacctgcgagtagagctaatggtccatctgagaaaacacctccaaggctt-aataatcaaaacatgcttcatgcatttcctttctagctggatctggag 270  Q
    ||||||||||||||||| | |||| |||||||||||||||||||||| ||| ||||||  |||||||||||| |||||||||||||||||||||||||||    
T  12409921 agacctgcgagtagagcaattggttcatctgagaaaacacctccaagacttaaataattgaaacatgcttcacgcatttcctttctagctggatctggag 12409822  T
Q  271 atacacaaattactgtatgcaataaaccagctaatgtgttta 312  Q
    || ||  |  || ||||| |||||||||||||||||||||||    
T  12409821 atgcaatacatattgtatacaataaaccagctaatgtgttta 12409780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 479 - 744
Target Start/End: Complemental strand, 28560614 - 28560349
Alignment:
Q  479 gattacttgctgagcaagaatcaaaagaaaaatagttccaagtagtagtgttgaaggatagattatgtggataaggtaaaatatgttcatgaaaattrac 578  Q
    |||||||||  |||||||||||| ||||||| |||||||||||||| ||  || | ||  |||||  ||||||||||| ||  |||||  |||| || ||    
T  28560614 gattacttgtagagcaagaatcagaagaaaagtagttccaagtagtggttatggatgaaggattagttggataaggtataacgtgttccagaaagttgac 28560515  T
Q  579 atgtctagatatgtgtatttctctagaatgaatatctaaaaggacaaaacctttgaaactaatagagtaacataagaaaacaaactttctagatctaagg 678  Q
    |||||| ||||| || || |||||| | ||||||||||| || ||  ||||||| ||||  | |||||||| ||| || ||| | ||||||| ||||  |    
T  28560514 atgtctggatatatgaatctctctaaagtgaatatctaagagaactgaacctttaaaaccgacagagtaacctaaaaacacagattttctagctctagtg 28560415  T
Q  679 gagagttcggatctttgttcttgaagagtagtgaaataacataaataaccaaaaactttaaaagaa 744  Q
    || |||| |||||||||| |||||||||||||  |||| |||||| ||||||||||||||||||||    
T  28560414 gaaagtttggatctttgtgcttgaagagtagttgaatagcataaagaaccaaaaactttaaaagaa 28560349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 547 - 668
Target Start/End: Complemental strand, 34067397 - 34067276
Alignment:
Q  547 ggataaggtaaaatatgttcatgaaaattracatgtctagatatgtgtatttctctagaatgaatatctaaaaggacaaaacctttgaaactaatagagt 646  Q
    ||||||||||| || |||||||| ||  | ||||||||||| || ||||| |||||||  ||||||||||| |||||| | ||||| |||| || |||||    
T  34067397 ggataaggtaatatgtgttcatggaaggtgacatgtctagagatatgtatctctctagtgtgaatatctaataggacagatcctttaaaaccaacagagt 34067298  T
Q  647 aacataagaaaacaaactttct 668  Q
    ||| ||| || ||| |||||||    
T  34067297 aacctaaaaagacacactttct 34067276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 550 - 637
Target Start/End: Original strand, 20851721 - 20851808
Alignment:
Q  550 taaggtaaaatatgttcatgaaaattracatgtctagatatgtgtatttctctagaatgaatatctaaaaggacaaaacctttgaaac 637  Q
    ||||||||||| |||||||||||| | |||| ||| || || ||||||||||| | || ||||||||| || ||| ||||||| ||||    
T  20851721 taaggtaaaatgtgttcatgaaaactgacatttctggaaatatgtatttctctggtataaatatctaagagaacataacctttaaaac 20851808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 119; Significance: 2e-60; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 119; E-Value: 2e-60
Query Start/End: Original strand, 314 - 649
Target Start/End: Original strand, 18964151 - 18964487
Alignment:
Q  314 agacataattttgtaaatgtgaaggtggatttattgttccgaaggattttct-gataataggttgaggaattggagatataggtgatgcaggctcaagat 412  Q
    ||||||| | |||||||||||||||||||||||| |||| | | |||||||| |||||||||| ||| ||  | || ||||||||||| |||||||| ||    
T  18964151 agacatagtcttgtaaatgtgaaggtggatttatagttctgtatgattttcttgataataggtggagaaagagaaggtataggtgatgtaggctcaatat 18964250  T
Q  413 gaggtggaccaggatcaataatggaagttggggaaataataggagtaggtgaactatcagaaggaagattacttgctgagcaagaatcaaaagaaaaata 512  Q
      |||||| |||| || ||||| | ||||  || ||| || |||||||||||||||||||  |||||||||||||| |||||||||||   |||||| ||    
T  18964251 atggtggatcagggtctataataggagttttgggaatgatgggagtaggtgaactatcaggtggaagattacttgcagagcaagaatcgggagaaaagta 18964350  T
Q  513 gttccaagtagtagtgttgaaggatagattatgtggataaggtaaaatatgttcatgaaaattracatgtctagatatgtgtatttctctagaatgaata 612  Q
    |||||||||||||||| || ||||  ||||   ||||||||||| |||||| |||||||| || ||||||||||| || || ||||||||||| ||||||    
T  18964351 gttccaagtagtagtgatggaggaaggatttgatggataaggtagaatatggtcatgaaagttgacatgtctagagatatggatttctctagagtgaata 18964450  T
Q  613 tctaaaaggacaaaacctttgaaactaatagagtaac 649  Q
    |||||||| ||| ||||||| |||| |||||| ||||    
T  18964451 tctaaaagaacataacctttaaaaccaatagaataac 18964487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 74; Significance: 1e-33; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 481 - 764
Target Start/End: Complemental strand, 19035224 - 19034941
Alignment:
Q  481 ttacttgctgagcaagaatcaaaagaaaaatagttccaagtagtagtgttgaaggatagattatgtggataaggtaaaatatgttcatgaaaattracat 580  Q
    |||||| | ||||||| |||| | ||||||||||| || ||||||||  || | ||  |||||   |||||||||||||| |||||||||||||| ||||    
T  19035224 ttacttacagagcaagtatcagatgaaaaatagtttcaggtagtagttatggatgagggattagagggataaggtaaaatgtgttcatgaaaattgacat 19035125  T
Q  581 gtctagatatgtgtatttctctagaatgaatatctaaaaggacaaaacctttgaaactaatagagtaacataagaaaacaaactttctagatctaaggga 680  Q
    |||| |||||||| || | ||||||||||||  |||| || || |||||||| |||| ||||||||||| |||||| ||| | ||||| | |||| | ||    
T  19035124 gtctggatatgtgaatctgtctagaatgaatgcctaagagaactaaacctttaaaaccaatagagtaacctaagaagacagattttctggctctaggtga 19035025  T
Q  681 gagttcggatctttgttcttgaagagtagtgaaataacataaataaccaaaaactttaaaagaagtaatgttagggattttatt 764  Q
     || | ||||||||||  ||||||||||||  | ||||||||| ||||||||| ||| |||||  |||| | |||||| |||||    
T  19035024 aagcttggatctttgtgtttgaagagtagttgagtaacataaagaaccaaaaaatttgaaagatttaatatcagggatcttatt 19034941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 36 - 312
Target Start/End: Original strand, 36745518 - 36745795
Alignment:
Q  36 atgaaaagtactcacaaaaatgaatcgagctccaagccaaattctttttggagaaggaaatggcatcattagacgaactagaccatatgtagcaacacca 135  Q
    |||||||||||||||| |||| |||| |||||| | ||| |||| |||||||||||||||||| ||||  || ||  | | |||  ||  ||| ||  |     
T  36745518 atgaaaagtactcacagaaatcaatctagctccgatccacattcgttttggagaaggaaatggtatcaagaggcggccaacaccgaatacagccaccgcg 36745617  T
Q  136 atgaaatggtaaatcaaactcaatggacgagaatttagacctgcgagtagagctaatggtccatctgagaaaacacctccaaggct-taataatcaaaac 234  Q
    | ||||||   || ||| ||||||||||| | ||| ||||| | ||||||||||| ||| ||||||||| |||||||||| |||||  ||||||||||||    
T  36745618 aagaaatgtagaaccaagctcaatggacgcggattcagaccggagagtagagctattggcccatctgagcaaacacctccgaggctcaaataatcaaaac 36745717  T
Q  235 atgcttcatgcatttcctttctagctggatctggagatacacaaattactgtatgcaataaaccagctaatgtgttta 312  Q
    |||||    |||||||  | ||||||||||| |||||| ||||||  ||| | | ||||  ||| |||||||||||||    
T  36745718 atgctcggcgcatttcaatgctagctggatcaggagatgcacaaaacactttgtacaatgcacctgctaatgtgttta 36745795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 547 - 637
Target Start/End: Complemental strand, 16987187 - 16987097
Alignment:
Q  547 ggataaggtaaaatatgttcatgaaaattracatgtctagatatgtgtatttctctagaatgaatatctaaaaggacaaaacctttgaaac 637  Q
    ||||||||||||||||||||||  || |  ||||||||||| ||||| || ||||||| ||| || |||||||| ||| | ||||||||||    
T  16987187 ggataaggtaaaatatgttcatagaattgaacatgtctagagatgtgaatctctctagtatggatgtctaaaagaacataccctttgaaac 16987097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 564 - 633
Target Start/End: Complemental strand, 35087825 - 35087756
Alignment:
Q  564 ttcatgaaaattracatgtctagatatgtgtatttctctagaatgaatatctaaaaggacaaaacctttg 633  Q
    ||||||||||   |||||||| || |||  |||||||||||||||||| || ||||||||||| ||||||    
T  35087825 ttcatgaaaagaaacatgtctggaaatgaatatttctctagaatgaatgtcaaaaaggacaaagcctttg 35087756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 45; Significance: 3e-16; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 154 - 237
Target Start/End: Original strand, 23479063 - 23479147
Alignment:
Q  154 ctcaatggacgagaatttagacctgcgagtagagctaatggtccatctgagaaaacacctccaaggct-taataatcaaaacatg 237  Q
    ||||||||||| ||||| ||||| | ||||||||||| |||||| |||||| ||||||||||||||||  |||||||||||||||    
T  23479063 ctcaatggacgcgaattcagaccggagagtagagctattggtccgtctgagcaaacacctccaaggctcaaataatcaaaacatg 23479147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 547 - 649
Target Start/End: Complemental strand, 8850308 - 8850206
Alignment:
Q  547 ggataaggtaaaatatgttcatgaaaattracatgtctagatatgtgtatttctctagaatgaatatctaaaaggacaaaacctttgaaactaatagagt 646  Q
    |||||||| || || || ||||||||| | ||||||||||| || || ||||||||||  ||||||||||| |  ||||||||||| ||| |||| ||||    
T  8850308 ggataaggcaatatgtgctcatgaaaactgacatgtctagagatatggatttctctagtgtgaatatctaacaaaacaaaacctttaaaagtaatggagt 8850209  T
Q  647 aac 649  Q
    |||    
T  8850208 aac 8850206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 547 - 637
Target Start/End: Complemental strand, 19654037 - 19653947
Alignment:
Q  547 ggataaggtaaaatatgttcatgaaaattracatgtctagatatgtgtatttctctagaatgaatatctaaaaggacaaaacctttgaaac 637  Q
    |||||||||||||  ||||||||  |  | ||||||||||| ||||| ||||||||||| || | |||||| || ||| ||||||||||||    
T  19654037 ggataaggtaaaaggtgttcatggtatgtgacatgtctagaaatgtgaatttctctagagtgtaaatctaagagaacagaacctttgaaac 19653947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 38 - 95
Target Start/End: Original strand, 23478947 - 23479004
Alignment:
Q  38 gaaaagtactcacaaaaatgaatcgagctccaagccaaattctttttggagaaggaaa 95  Q
    |||||||||||||| |||| |||| |||||| | ||| |||| |||||||||||||||    
T  23478947 gaaaagtactcacagaaatcaatctagctccgatccacattcattttggagaaggaaa 23479004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 154 - 312
Target Start/End: Original strand, 7984331 - 7984490
Alignment:
Q  154 ctcaatggacgagaatttagacctgcgagtagagctaatggtccatctgagaaaacacctccaaggct-taataatcaaaacatgcttcatgcatttcct 252  Q
    ||||||||||| | ||| | ||| | ||||||||||| |||||| |||||| ||||||||||||||||  |||||||||||||||||    |||||||      
T  7984331 ctcaatggacgcggattcaaaccggagagtagagctattggtccgtctgagcaaacacctccaaggctcaaataatcaaaacatgctcggagcatttcaa 7984430  T
Q  253 ttctagctggatctggagatacacaaattactgtatgcaataaaccagctaatgtgttta 312  Q
    | ||||||||||| |||||| ||||||  ||| | | ||||  ||| |||||||||||||    
T  7984431 tgctagctggatcaggagatgcacaaaacactttgtacaatgcacctgctaatgtgttta 7984490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 547 - 637
Target Start/End: Original strand, 21808767 - 21808857
Alignment:
Q  547 ggataaggtaaaatatgttcatgaaaattracatgtctagatatgtgtatttctctagaatgaatatctaaaaggacaaaacctttgaaac 637  Q
    ||||||||||||||||||||||  || |  ||||||||||| ||||| || ||||||| ||| || |||||||| ||| | ||||| ||||    
T  21808767 ggataaggtaaaatatgttcatagaattgaacatgtctagagatgtgaatctctctagtatggatgtctaaaagaacataccctttaaaac 21808857  T

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Target: chr5 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 546 - 643
Target Start/End: Complemental strand, 23957767 - 23957670
Alignment:
Q  546 tggataaggtaaaatatgttcatgaaaattracatgtctagatatgtgtatttctctagaatgaatatctaaaaggacaaaacctttgaaactaatag 643  Q
    |||||| |||||||| |||| ||||||| | |||| |||||| || ||||| ||||| | || |||||| ||||||||| |||||||||||| |||||    
T  23957767 tggatagggtaaaatgtgttaatgaaaactgacatttctagaaatatgtatctctctcgtattaatatccaaaaggacataacctttgaaaccaatag 23957670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 154 - 279
Target Start/End: Complemental strand, 13208268 - 13208142
Alignment:
Q  154 ctcaatggacgagaatttagacctgcgagtagagctaatggtccatctgagaaaacacctccaaggct-taataatcaaaacatgcttcatgcatttcct 252  Q
    ||||||||||| | ||| ||||  | ||||||||||| |||||| | |||| ||||||||||||||||  |||||| ||||||||||   ||||||||      
T  13208268 ctcaatggacgcggattcagactggagagtagagctattggtccgtatgagcaaacacctccaaggctcaaataattaaaacatgctcggtgcatttcaa 13208169  T
Q  253 ttctagctggatctggagatacacaaa 279  Q
    | ||||||||||| |||||| ||||||    
T  13208168 tgctagctggatcaggagatgcacaaa 13208142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 547 - 637
Target Start/End: Original strand, 36732322 - 36732412
Alignment:
Q  547 ggataaggtaaaatatgttcatgaaaattracatgtctagatatgtgtatttctctagaatgaatatctaaaaggacaaaacctttgaaac 637  Q
    |||||||| | |||||| ||||||||| | |||| |||||||||    |||||||||||||| | ||| ||||| |||||||| |||||||    
T  36732322 ggataaggaagaatatgatcatgaaaaattacatttctagatataaagatttctctagaatgtaaatcaaaaagaacaaaacccttgaaac 36732412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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