View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2966-Insertion-7 (Length: 823)

Name: NF2966-Insertion-7
Description: NF2966
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2966-Insertion-7
NF2966-Insertion-7
[»] chr4 (15 HSPs)
chr4 (117-596)||(53601621-53602119)
chr4 (682-744)||(26764284-26764346)
chr4 (647-682)||(53601539-53601574)
chr4 (8-43)||(53602181-53602216)
chr4 (681-803)||(32138766-32138887)
chr4 (682-736)||(34450814-34450868)
chr4 (683-767)||(45393981-45394065)
chr4 (683-727)||(47157383-47157427)
chr4 (683-730)||(6057000-6057047)
chr4 (684-727)||(47156634-47156677)
chr4 (688-731)||(47764101-47764144)
chr4 (688-730)||(18363654-18363696)
chr4 (688-730)||(36599232-36599274)
chr4 (681-730)||(14527577-14527626)
chr4 (689-730)||(26354233-26354274)
[»] chr2 (8 HSPs)
chr2 (682-767)||(20606885-20606970)
chr2 (683-742)||(4879056-4879115)
chr2 (682-767)||(40584333-40584418)
chr2 (683-730)||(44296860-44296907)
chr2 (684-722)||(44297423-44297461)
chr2 (677-730)||(127027-127080)
chr2 (683-732)||(4879529-4879577)
chr2 (682-767)||(10173935-10174020)
[»] chr7 (10 HSPs)
chr7 (683-767)||(30581230-30581314)
chr7 (683-727)||(42818557-42818601)
chr7 (682-728)||(46491691-46491737)
chr7 (682-725)||(2403447-2403490)
chr7 (687-730)||(36611555-36611598)
chr7 (683-730)||(41965778-41965825)
chr7 (681-727)||(7329072-7329118)
chr7 (685-771)||(37783441-37783527)
chr7 (681-730)||(3849595-3849644)
chr7 (682-731)||(28007156-28007205)
[»] chr3 (16 HSPs)
chr3 (678-730)||(18745371-18745423)
chr3 (683-725)||(53343862-53343904)
chr3 (683-732)||(20807937-20807986)
chr3 (683-732)||(20808606-20808655)
chr3 (688-736)||(9830577-9830625)
chr3 (683-730)||(15287567-15287614)
chr3 (685-732)||(29516548-29516595)
chr3 (674-725)||(47571945-47571996)
chr3 (682-725)||(53344747-53344790)
chr3 (681-732)||(53346495-53346546)
chr3 (683-737)||(53503-53557)
chr3 (683-737)||(55321-55375)
chr3 (683-733)||(4706954-4707004)
chr3 (688-730)||(54308458-54308500)
chr3 (685-730)||(18744622-18744667)
chr3 (682-727)||(53344016-53344061)
[»] chr5 (9 HSPs)
chr5 (688-782)||(15561415-15561509)
chr5 (682-730)||(39466884-39466932)
chr5 (683-731)||(24565573-24565621)
chr5 (683-731)||(24606609-24606657)
chr5 (683-730)||(39937907-39937954)
chr5 (683-725)||(33087472-33087514)
chr5 (680-725)||(2029053-2029098)
chr5 (681-730)||(35524120-35524169)
chr5 (683-728)||(40372163-40372208)
[»] chr8 (16 HSPs)
chr8 (683-732)||(9277196-9277245)
chr8 (683-731)||(40599887-40599935)
chr8 (676-736)||(42663992-42664052)
chr8 (683-742)||(31713396-31713455)
chr8 (683-730)||(31713869-31713916)
chr8 (680-725)||(202574-202619)
chr8 (680-725)||(317411-317456)
chr8 (683-764)||(4402254-4402335)
chr8 (682-731)||(22632968-22633017)
chr8 (688-731)||(22632327-22632370)
chr8 (675-722)||(42094753-42094800)
chr8 (683-737)||(19220913-19220967)
chr8 (682-771)||(9929199-9929288)
chr8 (677-730)||(26847091-26847144)
chr8 (685-730)||(36180689-36180734)
chr8 (680-725)||(42094006-42094051)
[»] chr1 (9 HSPs)
chr1 (682-731)||(26240871-26240920)
chr1 (688-734)||(2260858-2260904)
chr1 (681-733)||(24848424-24848476)
chr1 (683-725)||(16449555-16449597)
chr1 (683-725)||(16459129-16459171)
chr1 (683-733)||(24847783-24847833)
chr1 (682-731)||(26240113-26240162)
chr1 (676-725)||(39682312-39682361)
chr1 (684-725)||(51198577-51198618)
[»] chr6 (3 HSPs)
chr6 (681-730)||(2138475-2138524)
chr6 (682-730)||(13084880-13084928)
chr6 (683-732)||(2741398-2741447)
[»] scaffold0627 (1 HSPs)
scaffold0627 (689-730)||(6470-6511)


Alignment Details
Target: chr4 (Bit Score: 404; Significance: 0; HSPs: 15)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 404; E-Value: 0
Query Start/End: Original strand, 117 - 596
Target Start/End: Complemental strand, 53602119 - 53601621
Alignment:
Q  117 tgtttaactgaacagaagtttgaacgaataaattaacgagaggaagaaagaagagttggttacggtggacgatgactttatctggaagcctcttgagaaa 216  Q
    |||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  53602119 tgtttaactgaacataagtttgaacgaataaagtaacgagaggaagaaagaagagttggttacggtggacgatgactttatctggaagcctcttgagaaa 53602020  T
Q  217 ctgttctgcaccatatccccaatcatgagtactgaaagtaccgacacatttgattacat----------gatgctattaactgtgtc---------aatg 297  Q
    ||| ||||||||||||| ||||||||||| ||||||||||||||||||| |||||||||          ||||||||||||||||||         ||||    
T  53602019 ctgctctgcaccatatctccaatcatgagaactgaaagtaccgacacatgtgattacattcagttcaatgatgctattaactgtgtctgatttgtcaatg 53601920  T
Q  298 tcgtgttttataggttatgattatgagtaaaggtgaagattacctgccaacgatgccattaaccatgatgacaaggtgaggaggaatggggttgttagca 397  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  53601919 tcgtgttttataggttatgattatgagtaaaggtgaagattacctgccaacgatgccattaaccatgatgacaaggtgaggaggaatagggttgttagca 53601820  T
Q  398 tcactattatcttctactttggggttgttcaaacaacttcctccaaatcgccgatgatgaaatttcattttgataatccaaaaagcgatgagaagagatc 497  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  53601819 tcactattatcttctactttggggttgttcaaacaacttcctccaaatcgccgatgatgaaatttcattttgataatccaaaaagcgatgagaagagatc 53601720  T
Q  498 caaataataataatgatgatggcgtaaggttgaagttgaagcgaacaatcgcgataatgatcgcaaagctcagagcccaaaccagaaacgaattcattc 596  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  53601719 caaataataataatgatgatggcgtaaggttgaagttgaagcgaacaatcgcgataatgatcgcaaagctcagagcccaaaccagaaacgaattcattc 53601621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 682 - 744
Target Start/End: Complemental strand, 26764346 - 26764284
Alignment:
Q  682 aggtgaattctagggtgagggttcaaacaagtccctcaccggtggaccattttaaacaacaat 744  Q
    |||||||||||| ||||||||||| | ||| |||||||||||||||||| | |||||||||||    
T  26764346 aggtgaattctaaggtgagggttctatcaaatccctcaccggtggaccactataaacaacaat 26764284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 647 - 682
Target Start/End: Complemental strand, 53601574 - 53601539
Alignment:
Q  647 aagagatacataaataaattattatgtctttttaaa 682  Q
    ||||||||||||||||||||||||||||||||||||    
T  53601574 aagagatacataaataaattattatgtctttttaaa 53601539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 8 - 43
Target Start/End: Complemental strand, 53602216 - 53602181
Alignment:
Q  8 gttatctcatgtgagcactattgggtagacgttcat 43  Q
    ||||||||||||||||||||||||||||||||||||    
T  53602216 gttatctcatgtgagcactattgggtagacgttcat 53602181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 681 - 803
Target Start/End: Complemental strand, 32138887 - 32138766
Alignment:
Q  681 aaggtgaattctagggtgagggttcaaacaagtccctcaccggtggaccattttaaacaacaatcgaaagccgttagatcaatcaagttcacaaatcata 780  Q
    |||||| |||||| |||||||| || | ||| || ||||||||||||||| | || ||||||||  | | || |||||| ||||||||||||| ||| ||    
T  32138887 aaggtggattctaaggtgagggctctatcaaatcactcaccggtggaccactatagacaacaattaaga-ccattagattaatcaagttcacatatccta 32138789  T
Q  781 ttttactctatatgtactagatt 803  Q
    || ||| |||||| |||||||||    
T  32138788 ttctacactatatatactagatt 32138766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 682 - 736
Target Start/End: Original strand, 34450814 - 34450868
Alignment:
Q  682 aggtgaattctagggtgagggttcaaacaagtccctcaccggtggaccattttaa 736  Q
    ||||||||||||||||||||| ||||  |||||||||||||||||| || |||||    
T  34450814 aggtgaattctagggtgagggatcaattaagtccctcaccggtggagcactttaa 34450868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 683 - 767
Target Start/End: Original strand, 45393981 - 45394065
Alignment:
Q  683 ggtgaattctagggtgagggttcaaacaagtccctcaccggtggaccattttaaacaacaatcgaaagccgttagatcaatcaag 767  Q
    |||||||||||| ||||||||||||  ||||| || ||||||| |||| | | ||||| ||| || |||| ||||||||||||||    
T  45393981 ggtgaattctagagtgagggttcaattaagtctcttaccggtgaaccactattaacaataattgagagccattagatcaatcaag 45394065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 683 - 727
Target Start/End: Complemental strand, 47157427 - 47157383
Alignment:
Q  683 ggtgaattctagggtgagggttcaaacaagtccctcaccggtgga 727  Q
    |||||||||||||||||||||||||  || |||||||||||||||    
T  47157427 ggtgaattctagggtgagggttcaattaaatccctcaccggtgga 47157383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 683 - 730
Target Start/End: Complemental strand, 6057047 - 6057000
Alignment:
Q  683 ggtgaattctagggtgagggttcaaacaagtccctcaccggtggacca 730  Q
    |||| |||||||||||||||||| |  |||||||||||||||||||||    
T  6057047 ggtggattctagggtgagggttctactaagtccctcaccggtggacca 6057000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 684 - 727
Target Start/End: Original strand, 47156634 - 47156677
Alignment:
Q  684 gtgaattctagggtgagggttcaaacaagtccctcaccggtgga 727  Q
    ||||||||||||||||||||||||  |||||||||| |||||||    
T  47156634 gtgaattctagggtgagggttcaattaagtccctcatcggtgga 47156677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 688 - 731
Target Start/End: Complemental strand, 47764144 - 47764101
Alignment:
Q  688 attctagggtgagggttcaaacaagtccctcaccggtggaccat 731  Q
    |||||||||| ||||||||| ||| |||||||||||||||||||    
T  47764144 attctagggtaagggttcaatcaaatccctcaccggtggaccat 47764101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 688 - 730
Target Start/End: Complemental strand, 18363696 - 18363654
Alignment:
Q  688 attctagggtgagggttcaaacaagtccctcaccggtggacca 730  Q
    ||||||||||||||||||||  |||| ||||||||||||||||    
T  18363696 attctagggtgagggttcaattaagttcctcaccggtggacca 18363654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 688 - 730
Target Start/End: Original strand, 36599232 - 36599274
Alignment:
Q  688 attctagggtgagggttcaaacaagtccctcaccggtggacca 730  Q
    ||||||||||||||||||||  |||| ||||||||||||||||    
T  36599232 attctagggtgagggttcaattaagttcctcaccggtggacca 36599274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 681 - 730
Target Start/End: Complemental strand, 14527626 - 14527577
Alignment:
Q  681 aaggtgaattctagggtgagggttcaaacaagtccctcaccggtggacca 730  Q
    |||||| ||||||||||||||| ||||  |||||||||||||||| ||||    
T  14527626 aaggtggattctagggtgagggatcaattaagtccctcaccggtgaacca 14527577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 689 - 730
Target Start/End: Complemental strand, 26354274 - 26354233
Alignment:
Q  689 ttctagggtgagggttcaaacaagtccctcaccggtggacca 730  Q
    |||||||||||||||||||  ||||||||||| |||||||||    
T  26354274 ttctagggtgagggttcaattaagtccctcacaggtggacca 26354233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 46; Significance: 8e-17; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 682 - 767
Target Start/End: Complemental strand, 20606970 - 20606885
Alignment:
Q  682 aggtgaattctagggtgagggttcaaacaagtccctcaccggtggaccattttaaacaacaatcgaaagccgttagatcaatcaag 767  Q
    ||||||||||||||||||||||||||  |||||||||||||||| |||| | ||||||| |||  | |||| ||||||||||||||    
T  20606970 aggtgaattctagggtgagggttcaattaagtccctcaccggtgaaccactataaacaataattaagagccattagatcaatcaag 20606885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 683 - 742
Target Start/End: Original strand, 4879056 - 4879115
Alignment:
Q  683 ggtgaattctagggtgagggttcaaacaagtccctcaccggtggaccattttaaacaaca 742  Q
    |||| |||||||||||| ||||| ||||||||||||| |||||||||||| |||| ||||    
T  4879056 ggtggattctagggtgaaggttctaacaagtccctcatcggtggaccattataaaaaaca 4879115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 682 - 767
Target Start/End: Complemental strand, 40584418 - 40584333
Alignment:
Q  682 aggtgaattctagggtgagggttcaaacaagtccctcaccggtggaccattttaaacaacaatcgaaagccgttagatcaatcaag 767  Q
    ||||||||| ||||||||||||||||  | |||||||||||||| ||||   | ||||| ||| || |||| ||||||||||||||    
T  40584418 aggtgaattatagggtgagggttcaactaggtccctcaccggtgaaccaccgttaacaataattgagagccattagatcaatcaag 40584333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 683 - 730
Target Start/End: Original strand, 44296860 - 44296907
Alignment:
Q  683 ggtgaattctagggtgagggttcaaacaagtccctcaccggtggacca 730  Q
    ||||||||||||||||||||| |||  ||||||||||| |||||||||    
T  44296860 ggtgaattctagggtgagggtccaattaagtccctcactggtggacca 44296907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 684 - 722
Target Start/End: Complemental strand, 44297461 - 44297423
Alignment:
Q  684 gtgaattctagggtgagggttcaaacaagtccctcaccg 722  Q
    ||||||||||||||||||||||||  |||||||||||||    
T  44297461 gtgaattctagggtgagggttcaattaagtccctcaccg 44297423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 677 - 730
Target Start/End: Original strand, 127027 - 127080
Alignment:
Q  677 tttaaaggtgaattctagggtgagggttcaaacaagtccctcaccggtggacca 730  Q
    ||||| |||| ||||||||||||||||||||  |||||||||| | ||||||||    
T  127027 tttaatggtggattctagggtgagggttcaactaagtccctcatcagtggacca 127080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 683 - 732
Target Start/End: Complemental strand, 4879577 - 4879529
Alignment:
Q  683 ggtgaattctagggtgagggttcaaacaagtccctcaccggtggaccatt 732  Q
    |||| |||||||||||||| ||| ||||||||||||||| ||||||||||    
T  4879577 ggtggattctagggtgagg-ttctaacaagtccctcacccgtggaccatt 4879529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 682 - 767
Target Start/End: Original strand, 10173935 - 10174020
Alignment:
Q  682 aggtgaattctagggtgagggttcaaacaagtccctcaccggtggaccattttaaacaacaatcgaaagccgttagatcaatcaag 767  Q
    ||||| ||||||||||||||||||    |||||||||||||||| ||||  || |||||||| | | |||| |||||| |||||||    
T  10173935 aggtggattctagggtgagggttctgttaagtccctcaccggtgaaccaccttgaacaacaaacaagagccattagattaatcaag 10174020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 41; Significance: 0.00000000000008; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 683 - 767
Target Start/End: Complemental strand, 30581314 - 30581230
Alignment:
Q  683 ggtgaattctagggtgagggttcaaacaagtccctcaccggtggaccattttaaacaacaatcgaaagccgttagatcaatcaag 767  Q
    |||||||||||||||||||||||||  |||||||||||| ||| |||| | ||||||| |||  | |||| ||||||||||||||    
T  30581314 ggtgaattctagggtgagggttcaattaagtccctcaccagtgaaccactataaacaataattaagagccattagatcaatcaag 30581230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 683 - 727
Target Start/End: Complemental strand, 42818601 - 42818557
Alignment:
Q  683 ggtgaattctagggtgagggttcaaacaagtccctcaccggtgga 727  Q
    |||||||||||||||||||||||||  ||||||||||||||||||    
T  42818601 ggtgaattctagggtgagggttcaattaagtccctcaccggtgga 42818557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 682 - 728
Target Start/End: Complemental strand, 46491737 - 46491691
Alignment:
Q  682 aggtgaattctagggtgagggttcaaacaagtccctcaccggtggac 728  Q
    ||||| ||||||||||||||||||||  |||||||||||||||||||    
T  46491737 aggtggattctagggtgagggttcaactaagtccctcaccggtggac 46491691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 682 - 725
Target Start/End: Complemental strand, 2403490 - 2403447
Alignment:
Q  682 aggtgaattctagggtgagggttcaaacaagtccctcaccggtg 725  Q
    |||||||||||||| |||||||||||  ||||||||||||||||    
T  2403490 aggtgaattctaggatgagggttcaactaagtccctcaccggtg 2403447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 687 - 730
Target Start/End: Original strand, 36611555 - 36611598
Alignment:
Q  687 aattctagggtgagggttcaaacaagtccctcaccggtggacca 730  Q
    |||||||||||||||||||||  |||||||||||||||| ||||    
T  36611555 aattctagggtgagggttcaattaagtccctcaccggtgaacca 36611598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 683 - 730
Target Start/End: Complemental strand, 41965825 - 41965778
Alignment:
Q  683 ggtgaattctagggtgagggttcaaacaagtccctcaccggtggacca 730  Q
    |||| |||||||||||||||| |||  |||||||||||||||||||||    
T  41965825 ggtggattctagggtgagggtccaattaagtccctcaccggtggacca 41965778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 681 - 727
Target Start/End: Complemental strand, 7329118 - 7329072
Alignment:
Q  681 aaggtgaattctagggtgagggttcaaacaagtccctcaccggtgga 727  Q
    ||||||| |||||||||||||||||||  ||||||||||| ||||||    
T  7329118 aaggtgacttctagggtgagggttcaattaagtccctcactggtgga 7329072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 685 - 771
Target Start/End: Complemental strand, 37783527 - 37783441
Alignment:
Q  685 tgaattctagggtgagggttcaaacaagtccctcaccggtggaccattttaaacaacaatcgaaagccgttagatcaatcaagttca 771  Q
    |||||||||||||||||| || |  ||||||||||||||||||||| ||  |||||| || || |  ||||||||  ||||||||||    
T  37783527 tgaattctagggtgagggctctactaagtccctcaccggtggaccacttggaacaactattgagaatcgttagattgatcaagttca 37783441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 681 - 730
Target Start/End: Original strand, 3849595 - 3849644
Alignment:
Q  681 aaggtgaattctagggtgagggttcaaacaagtccctcaccggtggacca 730  Q
    |||||| |||||||| |||||| |||| ||| ||||||||||||||||||    
T  3849595 aaggtggattctaggatgagggatcaatcaaatccctcaccggtggacca 3849644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 682 - 731
Target Start/End: Original strand, 28007156 - 28007205
Alignment:
Q  682 aggtgaattctagggtgagggttcaaacaagtccctcaccggtggaccat 731  Q
    ||||| |||||||||||||||  |||  ||||||||||||||||||||||    
T  28007156 aggtggattctagggtgagggagcaattaagtccctcaccggtggaccat 28007205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 41; Significance: 0.00000000000008; HSPs: 16)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 678 - 730
Target Start/End: Complemental strand, 18745423 - 18745371
Alignment:
Q  678 ttaaaggtgaattctagggtgagggttcaaacaagtccctcaccggtggacca 730  Q
    |||| ||||||||||||||||||||||||| ||||||||||||||||| ||||    
T  18745423 ttaatggtgaattctagggtgagggttcaatcaagtccctcaccggtgcacca 18745371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 683 - 725
Target Start/End: Complemental strand, 53343904 - 53343862
Alignment:
Q  683 ggtgaattctagggtgagggttcaaacaagtccctcaccggtg 725  Q
    |||| ||||||||||||||||||||||||||||||||||||||    
T  53343904 ggtggattctagggtgagggttcaaacaagtccctcaccggtg 53343862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 683 - 732
Target Start/End: Original strand, 20807937 - 20807986
Alignment:
Q  683 ggtgaattctagggtgagggttcaaacaagtccctcaccggtggaccatt 732  Q
    |||| ||||||||||||||||||||  |||||||||||||||| ||||||    
T  20807937 ggtggattctagggtgagggttcaattaagtccctcaccggtgtaccatt 20807986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 683 - 732
Target Start/End: Complemental strand, 20808655 - 20808606
Alignment:
Q  683 ggtgaattctagggtgagggttcaaacaagtccctcaccggtggaccatt 732  Q
    |||| ||||||||||||||||||||  |||||||||||||||| ||||||    
T  20808655 ggtggattctagggtgagggttcaagtaagtccctcaccggtgtaccatt 20808606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 688 - 736
Target Start/End: Original strand, 9830577 - 9830625
Alignment:
Q  688 attctagggtgagggttcaaacaagtccctcaccggtggaccattttaa 736  Q
    ||||| ||||||||||||||  |||||||||||||||||||||| ||||    
T  9830577 attctcgggtgagggttcaattaagtccctcaccggtggaccatcttaa 9830625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 683 - 730
Target Start/End: Original strand, 15287567 - 15287614
Alignment:
Q  683 ggtgaattctagggtgagggttcaaacaagtccctcaccggtggacca 730  Q
    |||| |||||||||||||||| |||  |||||||||||||||||||||    
T  15287567 ggtggattctagggtgagggtccaattaagtccctcaccggtggacca 15287614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 685 - 732
Target Start/End: Complemental strand, 29516595 - 29516548
Alignment:
Q  685 tgaattctagggtgagggttcaaacaagtccctcaccggtggaccatt 732  Q
    ||||||||| |||||||||||||  ||||||||||||||||| |||||    
T  29516595 tgaattctacggtgagggttcaattaagtccctcaccggtggtccatt 29516548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 674 - 725
Target Start/End: Complemental strand, 47571996 - 47571945
Alignment:
Q  674 ctttttaaaggtgaattctagggtgagggttcaaacaagtccctcaccggtg 725  Q
    ||||| || |||||||||||||||||||| ||||  ||||||||||||||||    
T  47571996 cttttgaacggtgaattctagggtgagggatcaattaagtccctcaccggtg 47571945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 682 - 725
Target Start/End: Complemental strand, 53344790 - 53344747
Alignment:
Q  682 aggtgaattctagggtgagggttcaaacaagtccctcaccggtg 725  Q
    ||||| ||||||||||||||| |||| |||||||||||||||||    
T  53344790 aggtggattctagggtgagggatcaatcaagtccctcaccggtg 53344747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 681 - 732
Target Start/End: Complemental strand, 53346546 - 53346495
Alignment:
Q  681 aaggtgaattctagggtgagggttcaaacaagtccctcaccggtggaccatt 732  Q
    |||||||||||||  ||||||||||||  ||||||||||||||||| |||||    
T  53346546 aaggtgaattctacagtgagggttcaattaagtccctcaccggtggtccatt 53346495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 683 - 737
Target Start/End: Original strand, 53503 - 53557
Alignment:
Q  683 ggtgaattctagggtgagggttcaaacaagtccctcaccggtggaccattttaaa 737  Q
    |||| |||||| |||||| |||||| ||||||||||||| |||||||| ||||||    
T  53503 ggtggattctatggtgagagttcaatcaagtccctcaccagtggaccactttaaa 53557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 683 - 737
Target Start/End: Complemental strand, 55375 - 55321
Alignment:
Q  683 ggtgaattctagggtgagggttcaaacaagtccctcaccggtggaccattttaaa 737  Q
    ||||||||||||| |||||||||||  ||||||||||||| | ||||| ||||||    
T  55375 ggtgaattctaggatgagggttcaattaagtccctcaccgatagaccactttaaa 55321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 683 - 733
Target Start/End: Complemental strand, 4707004 - 4706954
Alignment:
Q  683 ggtgaattctagggtgagggttcaaacaagtccctcaccggtggaccattt 733  Q
    |||| |||||||||||||||||| |  |||||||||||||||| |||||||    
T  4707004 ggtggattctagggtgagggttctattaagtccctcaccggtgtaccattt 4706954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 688 - 730
Target Start/End: Original strand, 54308458 - 54308500
Alignment:
Q  688 attctagggtgagggttcaaacaagtccctcaccggtggacca 730  Q
    ||||||||||||||||||||  |||||||||||||||| ||||    
T  54308458 attctagggtgagggttcaattaagtccctcaccggtgaacca 54308500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 685 - 730
Target Start/End: Original strand, 18744622 - 18744667
Alignment:
Q  685 tgaattctagggtgagggttcaaacaagtccctcaccggtggacca 730  Q
    ||||||||||| |||||||| || ||||||||||||||||| ||||    
T  18744622 tgaattctaggatgagggtttaatcaagtccctcaccggtgcacca 18744667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 682 - 727
Target Start/End: Original strand, 53344016 - 53344061
Alignment:
Q  682 aggtgaattctagggtgagggttcaaacaagtccctcaccggtgga 727  Q
    ||||| |||||||| |||||| |||| |||||||||||||||||||    
T  53344016 aggtggattctaggatgagggatcaatcaagtccctcaccggtgga 53344061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 39; Significance: 0.000000000001; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 688 - 782
Target Start/End: Original strand, 15561415 - 15561509
Alignment:
Q  688 attctagggtgagggttcaaacaagtccctcaccggtggaccattttaaacaacaatcgaaagccgttagatcaatcaagttcacaaatcatatt 782  Q
    ||||||||||||||| || |  ||||||||||||||||||||||||  |||||| || || | || |||||| ||||||||||||| || |||||    
T  15561415 attctagggtgagggctctactaagtccctcaccggtggaccatttcgaacaaccattgagaaccattagattaatcaagttcacatatgatatt 15561509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 682 - 730
Target Start/End: Original strand, 39466884 - 39466932
Alignment:
Q  682 aggtgaattctagggtgagggttcaaacaagtccctcaccggtggacca 730  Q
    |||||||||||||||||||||| |||  |||||||||||||||||||||    
T  39466884 aggtgaattctagggtgagggtccaattaagtccctcaccggtggacca 39466932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 683 - 731
Target Start/End: Original strand, 24565573 - 24565621
Alignment:
Q  683 ggtgaattctagggtgagggttcaaacaagtccctcaccggtggaccat 731  Q
    |||| ||||||||||||||||||||  || |||||||||||||||||||    
T  24565573 ggtggattctagggtgagggttcaattaaatccctcaccggtggaccat 24565621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 683 - 731
Target Start/End: Original strand, 24606609 - 24606657
Alignment:
Q  683 ggtgaattctagggtgagggttcaaacaagtccctcaccggtggaccat 731  Q
    |||| ||||||||||||||||||||  || |||||||||||||||||||    
T  24606609 ggtggattctagggtgagggttcaattaaatccctcaccggtggaccat 24606657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 683 - 730
Target Start/End: Complemental strand, 39937954 - 39937907
Alignment:
Q  683 ggtgaattctagggtgagggttcaaacaagtccctcaccggtggacca 730  Q
    |||| |||||||||||||||||||   |||||||||||||||||||||    
T  39937954 ggtggattctagggtgagggttcagttaagtccctcaccggtggacca 39937907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 683 - 725
Target Start/End: Complemental strand, 33087514 - 33087472
Alignment:
Q  683 ggtgaattctagggtgagggttcaaacaagtccctcaccggtg 725  Q
    ||||||||||||| |||||| |||| |||||||||||||||||    
T  33087514 ggtgaattctaggatgagggatcaatcaagtccctcaccggtg 33087472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 680 - 725
Target Start/End: Complemental strand, 2029098 - 2029053
Alignment:
Q  680 aaaggtgaattctagggtgagggttcaaacaagtccctcaccggtg 725  Q
    ||||||| ||||||||||||||| ||||  ||||||||||||||||    
T  2029098 aaaggtggattctagggtgagggctcaattaagtccctcaccggtg 2029053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 681 - 730
Target Start/End: Original strand, 35524120 - 35524169
Alignment:
Q  681 aaggtgaattctagggtgagggttcaaacaagtccctcaccggtggacca 730  Q
    |||||| |||||||| |||| ||||||  |||||||||||||||||||||    
T  35524120 aaggtggattctaggatgagagttcaattaagtccctcaccggtggacca 35524169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 683 - 728
Target Start/End: Complemental strand, 40372208 - 40372163
Alignment:
Q  683 ggtgaattctagggtgagggttcaaacaagtccctcaccggtggac 728  Q
    |||| ||||||||||||||||||||  |||| ||||||||||||||    
T  40372208 ggtggattctagggtgagggttcaattaagttcctcaccggtggac 40372163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 38; Significance: 0.000000000005; HSPs: 16)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 683 - 732
Target Start/End: Original strand, 9277196 - 9277245
Alignment:
Q  683 ggtgaattctagggtgagggttcaaacaagtccctcaccggtggaccatt 732  Q
    |||| |||||||||||||||||| ||||||||||||| ||||||||||||    
T  9277196 ggtggattctagggtgagggttctaacaagtccctcatcggtggaccatt 9277245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 683 - 731
Target Start/End: Original strand, 40599887 - 40599935
Alignment:
Q  683 ggtgaattctagggtgagggttcaaacaagtccctcaccggtggaccat 731  Q
    |||| |||||||| |||||||||||||||||||||||||||||| ||||    
T  40599887 ggtggattctaggatgagggttcaaacaagtccctcaccggtggtccat 40599935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 676 - 736
Target Start/End: Complemental strand, 42664052 - 42663992
Alignment:
Q  676 ttttaaaggtgaattctagggtgagggttcaaacaagtccctcaccggtggaccattttaa 736  Q
    |||| |||||||||| ||||||||||||||||  ||||||||||| |||||||||| ||||    
T  42664052 tttttaaggtgaattttagggtgagggttcaattaagtccctcactggtggaccatcttaa 42663992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 683 - 742
Target Start/End: Original strand, 31713396 - 31713455
Alignment:
Q  683 ggtgaattctagggtgagggttcaaacaagtccctcaccggtggaccattttaaacaaca 742  Q
    |||| |||||||||||| ||||| ||||||||||||| |||||||||||| |||| ||||    
T  31713396 ggtggattctagggtgaaggttctaacaagtccctcatcggtggaccattataaaaaaca 31713455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 683 - 730
Target Start/End: Complemental strand, 31713916 - 31713869
Alignment:
Q  683 ggtgaattctagggtgagggttcaaacaagtccctcaccggtggacca 730  Q
    |||| |||||||||||||||||| ||||||||||||||| ||||||||    
T  31713916 ggtggattctagggtgagggttctaacaagtccctcacccgtggacca 31713869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 680 - 725
Target Start/End: Original strand, 202574 - 202619
Alignment:
Q  680 aaaggtgaattctagggtgagggttcaaacaagtccctcaccggtg 725  Q
    |||||||||||||||| |||||||||||  ||||||||||||||||    
T  202574 aaaggtgaattctaggatgagggttcaattaagtccctcaccggtg 202619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 680 - 725
Target Start/End: Original strand, 317411 - 317456
Alignment:
Q  680 aaaggtgaattctagggtgagggttcaaacaagtccctcaccggtg 725  Q
    |||||||||||||||| |||||||||||  ||||||||||||||||    
T  317411 aaaggtgaattctaggatgagggttcaattaagtccctcaccggtg 317456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 683 - 764
Target Start/End: Complemental strand, 4402335 - 4402254
Alignment:
Q  683 ggtgaattctagggtgagggttcaaacaagtccctcaccggtggaccattttaaacaacaatcgaaagccgttagatcaatc 764  Q
    |||| |||||||||||||||||| |  |||||||||||||||| |||| ||| |||||||| | | |||| |||||| ||||    
T  4402335 ggtggattctagggtgagggttctattaagtccctcaccggtgaaccactttgaacaacaaacaagagccattagattaatc 4402254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 682 - 731
Target Start/End: Complemental strand, 22633017 - 22632968
Alignment:
Q  682 aggtgaattctagggtgagggttcaaacaagtccctcaccggtggaccat 731  Q
    ||||| ||||||||||||||| ||||  ||||||||||||||||||||||    
T  22633017 aggtggattctagggtgagggatcaattaagtccctcaccggtggaccat 22632968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 688 - 731
Target Start/End: Original strand, 22632327 - 22632370
Alignment:
Q  688 attctagggtgagggttcaaacaagtccctcaccggtggaccat 731  Q
    ||||||||||||||| ||||  ||||||||||||||||||||||    
T  22632327 attctagggtgagggatcaattaagtccctcaccggtggaccat 22632370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 675 - 722
Target Start/End: Complemental strand, 42094800 - 42094753
Alignment:
Q  675 tttttaaaggtgaattctagggtgagggttcaaacaagtccctcaccg 722  Q
    ||||| |||||||||||||||||||||| ||||  |||||||||||||    
T  42094800 ttttttaaggtgaattctagggtgagggatcaattaagtccctcaccg 42094753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 683 - 737
Target Start/End: Original strand, 19220913 - 19220967
Alignment:
Q  683 ggtgaattctagggtgagggttcaaacaagtccctcaccggtggaccattttaaa 737  Q
    ||||||||||||| |||||||||||  |||||| |||||||| ||||| ||||||    
T  19220913 ggtgaattctaggatgagggttcaattaagtccgtcaccggtagaccactttaaa 19220967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 682 - 771
Target Start/End: Original strand, 9929199 - 9929288
Alignment:
Q  682 aggtgaattctagggtgagggttcaaacaagtccctcaccggtggaccattttaaacaacaatcgaaagccgttagatcaatcaagttca 771  Q
    |||||||||||| |||||||| || |  ||||||||||||||||||||| ||  |||||| || || |  ||||||||  ||||||||||    
T  9929199 aggtgaattctaaggtgagggctctactaagtccctcaccggtggaccacttggaacaactattgagaatcgttagattgatcaagttca 9929288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 677 - 730
Target Start/End: Original strand, 26847091 - 26847144
Alignment:
Q  677 tttaaaggtgaattctagggtgagggttcaaacaagtccctcaccggtggacca 730  Q
    |||| ||||| |||||||||||||||| |||  |||||||||||||||| ||||    
T  26847091 tttagaggtggattctagggtgagggtccaattaagtccctcaccggtgaacca 26847144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 685 - 730
Target Start/End: Original strand, 36180689 - 36180734
Alignment:
Q  685 tgaattctagggtgagggttcaaacaagtccctcaccggtggacca 730  Q
    |||||||||||||||||||| ||  |||||||||||||||| ||||    
T  36180689 tgaattctagggtgagggtttaattaagtccctcaccggtgaacca 36180734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 680 - 725
Target Start/End: Original strand, 42094006 - 42094051
Alignment:
Q  680 aaaggtgaattctagggtgagggttcaaacaagtccctcaccggtg 725  Q
    ||||||| ||||||||||||||| ||||  ||||||||||||||||    
T  42094006 aaaggtggattctagggtgagggatcaattaagtccctcaccggtg 42094051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 38; Significance: 0.000000000005; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 682 - 731
Target Start/End: Complemental strand, 26240920 - 26240871
Alignment:
Q  682 aggtgaattctagggtgagggttcaaacaagtccctcaccggtggaccat 731  Q
    ||||| ||||||||||||||||||||  ||||||||||||||||||||||    
T  26240920 aggtggattctagggtgagggttcaattaagtccctcaccggtggaccat 26240871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 688 - 734
Target Start/End: Original strand, 2260858 - 2260904
Alignment:
Q  688 attctagggtgagggttcaaacaagtccctcaccggtggaccatttt 734  Q
    |||||||||||||||||||| ||||||||||||||||  ||||||||    
T  2260858 attctagggtgagggttcaatcaagtccctcaccggtataccatttt 2260904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 681 - 733
Target Start/End: Complemental strand, 24848476 - 24848424
Alignment:
Q  681 aaggtgaattctagggtgagggttcaaacaagtccctcaccggtggaccattt 733  Q
    |||||| |||||||||||||||||| |  |||||||||||||||| |||||||    
T  24848476 aaggtggattctagggtgagggttctattaagtccctcaccggtgtaccattt 24848424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 683 - 725
Target Start/End: Original strand, 16449555 - 16449597
Alignment:
Q  683 ggtgaattctagggtgagggttcaaacaagtccctcaccggtg 725  Q
    |||| ||||||||||||||||||||  ||||||||||||||||    
T  16449555 ggtggattctagggtgagggttcaattaagtccctcaccggtg 16449597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 683 - 725
Target Start/End: Original strand, 16459129 - 16459171
Alignment:
Q  683 ggtgaattctagggtgagggttcaaacaagtccctcaccggtg 725  Q
    |||| ||||||||||||||||||||  ||||||||||||||||    
T  16459129 ggtggattctagggtgagggttcaattaagtccctcaccggtg 16459171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 683 - 733
Target Start/End: Original strand, 24847783 - 24847833
Alignment:
Q  683 ggtgaattctagggtgagggttcaaacaagtccctcaccggtggaccattt 733  Q
    |||| |||||||||||||||||| |  |||||||||||||||| |||||||    
T  24847783 ggtggattctagggtgagggttctattaagtccctcaccggtgtaccattt 24847833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 682 - 731
Target Start/End: Original strand, 26240113 - 26240162
Alignment:
Q  682 aggtgaattctagggtgagggttcaaacaagtccctcaccggtggaccat 731  Q
    ||||| ||||||||||||||| ||||  |||||||||||||||| |||||    
T  26240113 aggtggattctagggtgagggatcaattaagtccctcaccggtgaaccat 26240162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 676 - 725
Target Start/End: Original strand, 39682312 - 39682361
Alignment:
Q  676 ttttaaaggtgaattctagggtgagggttcaaacaagtccctcaccggtg 725  Q
    ||||||||||| ||||||||||||||| || | ||||||| |||||||||    
T  39682312 ttttaaaggtggattctagggtgagggctctatcaagtccttcaccggtg 39682361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 684 - 725
Target Start/End: Original strand, 51198577 - 51198618
Alignment:
Q  684 gtgaattctagggtgagggttcaaacaagtccctcaccggtg 725  Q
    ||||||||||||||||||||||||| |||||| |||| ||||    
T  51198577 gtgaattctagggtgagggttcaaagaagtccgtcactggtg 51198618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 34; Significance: 0.000000001; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 681 - 730
Target Start/End: Original strand, 2138475 - 2138524
Alignment:
Q  681 aaggtgaattctagggtgagggttcaaacaagtccctcaccggtggacca 730  Q
    ||||||||||||||||||||||| |||  | |||||||||||||||||||    
T  2138475 aaggtgaattctagggtgagggtccaattaggtccctcaccggtggacca 2138524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 682 - 730
Target Start/End: Complemental strand, 13084928 - 13084880
Alignment:
Q  682 aggtgaattctagggtgagggttcaaacaagtccctcaccggtggacca 730  Q
    ||||||||||||||||||||||||||  ||||| |||||||||| ||||    
T  13084928 aggtgaattctagggtgagggttcaactaagtctctcaccggtgtacca 13084880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 683 - 732
Target Start/End: Complemental strand, 2741447 - 2741398
Alignment:
Q  683 ggtgaattctagggtgagggttcaaacaagtccctcaccggtggaccatt 732  Q
    ||||||||||| ||||| |||| || ||||||||||||||||| ||||||    
T  2741447 ggtgaattctaaggtgatggtttaatcaagtccctcaccggtgaaccatt 2741398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0627 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: scaffold0627
Description:

Target: scaffold0627; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 689 - 730
Target Start/End: Original strand, 6470 - 6511
Alignment:
Q  689 ttctagggtgagggttcaaacaagtccctcaccggtggacca 730  Q
    |||||||||||||||||||  ||||||||||||| |||||||    
T  6470 ttctagggtgagggttcaattaagtccctcaccgatggacca 6511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University