View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2966-Insertion-8 (Length: 763)
Name: NF2966-Insertion-8
Description: NF2966
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2966-Insertion-8 |
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Alignment Details
Target: chr4 (Bit Score: 446; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 446; E-Value: 0
Query Start/End: Original strand, 233 - 746
Target Start/End: Original strand, 53636839 - 53637348
Alignment:
| Q |
233 |
gatggagcattatacacaaaatt-aagtatttgtctctgaaagaattggagaataattttttgcttgcatataatatctctttagttaaactgagaaata |
331 |
Q |
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| T |
53636839 |
gatggagcattatacacaaaatttaagtatttgtctctgaaagaattggagaataattttttgcttgcatataatatctctttagttaaaccgagaaata |
53636938 |
T |
|
| Q |
332 |
tccactaattgaaagattctattgttagatcctctaccctctatgnnnnnnntactttctattctatggtcattcaacatgaaagacagaataatcttgc |
431 |
Q |
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| T |
53636939 |
tccactaattgaaagattctattgttagatcctctaccctctatgaaaaaaatactttct-----atggtcattcaacatgaaagacagaataatcttgc |
53637033 |
T |
|
| Q |
432 |
tccctctcgatgattccaaagtattgattaatgttgttgactacaggaaacttcactccaaatataacaaatcatcttcctataaactggttcttgctct |
531 |
Q |
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| T |
53637034 |
tccctctcgatgattccaaagtattgattaatgttgttgactacaggaaacttcactccaaatataacaaatcatcttcctattaactggttcttgctct |
53637133 |
T |
|
| Q |
532 |
aaaatggtgcaagattttgcaccctttgcaacacatcaggacacactgttgaagtatgctataggaagcatggatttcctccttacgtgcagagaaattc |
631 |
Q |
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| T |
53637134 |
aaaatggtgcaagattttgcaccctttgcaacacatcaggacacactgttgaagtatgctataggaagcatggatttcgtccttacgtgcagagaaattc |
53637233 |
T |
|
| Q |
632 |
caattcttctgttcacaatgtatcagcagctgatgggggtgaattcaatgaaattcaacttcacagaatcacatcgtgacatcaaagtagcttcgcctag |
731 |
Q |
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| T |
53637234 |
caattcttctgttcacaatgtatcagcagctgatgggggtgaattcaatgaaattcaacttcacagaatcacatcgtcacatcaaagcagcttcgcctag |
53637333 |
T |
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| Q |
732 |
cattacttaggatca |
746 |
Q |
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| T |
53637334 |
cattacttaggatca |
53637348 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 175; E-Value: 8e-94
Query Start/End: Original strand, 34 - 216
Target Start/End: Original strand, 53636608 - 53636790
Alignment:
| Q |
34 |
agtctctatttctacctggtttttgaactatctaaacaatttttcaccattcaccataattaatttatttgaatatacttgttttacagtttgatgcccc |
133 |
Q |
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| T |
53636608 |
agtctctatttctacctggtttttgaactatctaaacaatttttcaccattcaccataattaatttatttgaatatacttggtttacagtttgatgcccc |
53636707 |
T |
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| Q |
134 |
tatagtatcctctctgtttataactgtattagaaggatgaagagtttgttagatttttgtttctttcaaaagagcttatagct |
216 |
Q |
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| T |
53636708 |
tatagtatcctctctgtttatagctgtattagaaggatgaagagtttgttagatttttgtttctttcaaaagagcttatagct |
53636790 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000007; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 109 - 182
Target Start/End: Complemental strand, 48333446 - 48333375
Alignment:
| Q |
109 |
tacttgttttacagtttgatgcccctatagtatcctctctgtttataactgtattagaaggatgaagagtttgt |
182 |
Q |
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| T |
48333446 |
tacttgttttacagtttgatgcccctatattat--gctctgtttatggctgtattaatgggatgaagggtttgt |
48333375 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 238 - 314
Target Start/End: Complemental strand, 48333366 - 48333292
Alignment:
| Q |
238 |
agcattatacacaaaattaagtatttgtctctgaaagaattggagaataattttttgcttgcatataatatctcttt |
314 |
Q |
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||||||||||||||| |||||||||||| || | || |||||| |||| ||||||||||| ||| |||||||||| |
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| T |
48333366 |
agcattatacacaaatataagtatttgtcactca--gacttggaggataactttttgcttgcctattatatctcttt |
48333292 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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