View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2966R-Insertion-3 (Length: 578)
Name: NF2966R-Insertion-3
Description: NF2966R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2966R-Insertion-3 |
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| [»] chr4 (9 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 570; Significance: 0; HSPs: 9)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 570; E-Value: 0
Query Start/End: Original strand, 9 - 578
Target Start/End: Complemental strand, 40894810 - 40894241
Alignment:
| Q |
9 |
atttccacttctgctcatcagagctaagctcctccaaggttgaaatgtcctcagattctttgtcttttcctcctacaagaatcaataatcacacgacaca |
108 |
Q |
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| T |
40894810 |
atttccacttctgctcatcagagctaagctcctccaaggttgaaatgtcctcagattctttgtcttttcctcctacaagaatcaataatcacacgacaca |
40894711 |
T |
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| Q |
109 |
ttcaaattctaaacaagcacacaattgaattgaactaatcatgatgaaacattgttaaatctgaaacaaataaaatcagaaagaacaataataccattga |
208 |
Q |
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| T |
40894710 |
ttcaaattctaaacaagcacacaattgaattgaactaatcatgatgaaacattgttaaatctgaaacaaataaaatcagaaagaacaataataccattga |
40894611 |
T |
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| Q |
209 |
tgatatactcgtacgcatcagggctcaggtattttctcaaatttgaaatcaatcagaaagaacaatgatacattattattattatcatcagtaaattaag |
308 |
Q |
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| T |
40894610 |
tgatatactcgtacgcatcagggctcaggtattttctcaaatttgaaatcaatcagaaagaacaatgatacattattattattatcatcagtaaattaag |
40894511 |
T |
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| Q |
309 |
cacgcaaatgaaatcaaccagaaagaacaatgatacctaccgaaaaactgatagctgcattaagtgtttatgcttttatgtggccaatatttctagtcat |
408 |
Q |
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| T |
40894510 |
cacgcaaatgaaatcaaccagaaagaacaatgatacctaccgaaaaactgatagctgcattaagtgtttatgcttttatgtggccaatatttctagtcat |
40894411 |
T |
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| Q |
409 |
gcttcttaatagttttactctcactgatttgcaggtgcctggaggaaggagcagaggtttttctattgaagccagtcaagtgcatgaaagatttcatcat |
508 |
Q |
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| T |
40894410 |
gcttcttaatagttttactctcactgatttgcaggtgcctggaggaaggagcagaggtttttctattgaagccagtcaagtgcatgaaagatttcatcat |
40894311 |
T |
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| Q |
509 |
gagaggtgaagtaaaagatggtgagaaaagttggttctctcaaaagaagccaatcatcgcatgagtgcag |
578 |
Q |
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| T |
40894310 |
gagaggtgaagtaaaagatggtgagaaaagttggttctctcaaaagaagccaatcatcgcatgagtgcag |
40894241 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 127; E-Value: 3e-65
Query Start/End: Original strand, 9 - 203
Target Start/End: Original strand, 44153485 - 44153679
Alignment:
| Q |
9 |
atttccacttctgctcatcagagctaagctcctccaaggttgaaatgtcctcagattctttgtcttttcctcctacaagaatcaataatcacacgacaca |
108 |
Q |
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| T |
44153485 |
atttccacttcggcacatcagagctcagctcctccaaggttgaaatgtcctcagattctttgccttttcctcctgcatgaatcaataatcatgcggcaca |
44153584 |
T |
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| Q |
109 |
ttcaaattctaaacaagcacacaattgaattgaactaatcatgatgaaacattgttaaatctgaaacaaataaaatcagaaagaacaataatacc |
203 |
Q |
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| T |
44153585 |
ttcaaattctaaacaagcactcaattgaatttaactaatcataatgaaacaatcttaaatctgaaacaaatgaaatcagaaaaaacaaaaatacc |
44153679 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 101; E-Value: 9e-50
Query Start/End: Original strand, 9 - 203
Target Start/End: Original strand, 40898211 - 40898398
Alignment:
| Q |
9 |
atttccacttctgctcatcaga---gctaagctcctccaaggttgaaatgtcctcagattctttgtcttttcctcctacaagaatcaataatcacacgac |
105 |
Q |
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| T |
40898211 |
atttccacttctgcacatcagaagagctcagctcctccaaggttgaaatgtcctcagattctttgccttttcctcctgcatgaatcaataa--------- |
40898301 |
T |
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| Q |
106 |
acattcaaattctaaacaagcacacaattgaattgaactaatcatgatgaaacattgttaaatctgaaacaaataaaatcagaaagaacaataatacc |
203 |
Q |
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| T |
40898302 |
-cattaaaattctaaacaagcacacaattgaattgaactaatcaaaatgaaacaatcttaaatccgaaacaaatgaaatcagaaagaacaataatacc |
40898398 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 362 - 540
Target Start/End: Original strand, 44155367 - 44155549
Alignment:
| Q |
362 |
gctgcattaagtgtttatgcttttatgtggccaatatttctagtcatgcttcttaatagttttactctca--ctgatttgcaggtgcctggaggaaggag |
459 |
Q |
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| T |
44155367 |
gctgcattaagtgtttatgcttttatgtggccggtatttctagtcctgcttcttaatagttttactctcactctgatttgcaggtgtctggaggaaggag |
44155466 |
T |
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| Q |
460 |
cagaggtttttctattgaa---gcca---gtcaagtgcatgaaagatttcatcatgagaggtgaagtaaaagatggtgagaaaagtt |
540 |
Q |
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| T |
44155467 |
cagag----ttccagtcaagttgtcaggtgtcaagtgcttgaaagagttcatcatgagaggtgaagtgaaagttggtgaggaaagtt |
44155549 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 377 - 487
Target Start/End: Original strand, 44214434 - 44214544
Alignment:
| Q |
377 |
tatgcttttatgtggccaatatttctagtcatgcttcttaatagttttactctcactgatttgcaggtgcctggaggaaggagcagaggtttttctattg |
476 |
Q |
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|||||| ||| ||||||| ||| || ||| |||||||||||||||||| | ||||| ||||||||||| |||||||||||||||||| |||| | || |
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| T |
44214434 |
tatgctattaggtggccagtatatcctgtcctgcttcttaatagttttattttcactaatttgcaggtgtttggaggaaggagcagaggattttttgtta |
44214533 |
T |
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| Q |
477 |
aagccagtcaa |
487 |
Q |
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| T |
44214534 |
aagccagtcaa |
44214544 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 108 - 209
Target Start/End: Original strand, 44153937 - 44154027
Alignment:
| Q |
108 |
attcaaattctaaacaagcacacaattgaattgaactaatcatgatgaaacattgttaaatctgaaacaaataaaatcagaaagaacaataataccattg |
207 |
Q |
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| T |
44153937 |
attcaaattaaagacatgcacacagttgaattgaactaatcatgatgaaacattgt-----------caaataaaatcagaaagaacaataatacctttg |
44154025 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 108 - 209
Target Start/End: Original strand, 40898662 - 40898752
Alignment:
| Q |
108 |
attcaaattctaaacaagcacacaattgaattgaactaatcatgatgaaacattgttaaatctgaaacaaataaaatcagaaagaacaataataccattg |
207 |
Q |
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| T |
40898662 |
attcaaattaaagacatgcacacggttgaattgaactaatcatgatgaaacattgt-----------caaataaaatcagaaagaacaataatacctttg |
40898750 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 493 - 536
Target Start/End: Original strand, 44214565 - 44214608
Alignment:
| Q |
493 |
tgaaagatttcatcatgagaggtgaagtaaaagatggtgagaaa |
536 |
Q |
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| T |
44214565 |
tgaaagatttcatcatgagaggtgaagtgaaggatggcgagaaa |
44214608 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 300 - 342
Target Start/End: Original strand, 44154799 - 44154841
Alignment:
| Q |
300 |
taaattaagcacgcaaatgaaatcaaccagaaagaacaatgat |
342 |
Q |
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| T |
44154799 |
taaattaagcacgcaaacgaaatcaatcagagagaacaatgat |
44154841 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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