View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2966R-Insertion-5 (Length: 350)
Name: NF2966R-Insertion-5
Description: NF2966R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2966R-Insertion-5 |
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| [»] chr4 (4 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 249; Significance: 1e-138; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 90 - 350
Target Start/End: Complemental strand, 48416917 - 48416657
Alignment:
| Q |
90 |
atggggagtgagaaaagaggagttgatgttgtctctgcagttcaaaaggcaaccgtgatgactctagaaagcccactcatatctgcaattccacttaaat |
189 |
Q |
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| T |
48416917 |
atggggagtgagaaaagaggagttgatgttgtctctgcagttcaaaaggcaaccgtgatgactctagaaagcccactcatatctgcaattccacttaaat |
48416818 |
T |
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| Q |
190 |
ttgatgcacactcttatgaggttgggatgttagcaggagctagccggggccaagtctatgtttggacattgagctaagatttttattctataatatgcag |
289 |
Q |
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| T |
48416817 |
ttgatgcacactcttatgaggttgggatgttagcaggagctagctggggccaagtctatgtttggacattgagctaagatttttattctataatatgcag |
48416718 |
T |
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| Q |
290 |
cacaaattttggagtccccatgttgttttggatgtggtattgcagcacacattctcgagtc |
350 |
Q |
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| T |
48416717 |
cacaaattttggagtccccgtgttgttttggatgtgatattgcagcacacattctcgagtc |
48416657 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 128; E-Value: 4e-66
Query Start/End: Original strand, 142 - 347
Target Start/End: Complemental strand, 48422117 - 48421908
Alignment:
| Q |
142 |
ccgtgatgactctagaaagcccactcatatctgcaattccacttaaatttgatgcacactcttatgaggttgggatgttagcaggag---ctagccgggg |
238 |
Q |
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| T |
48422117 |
ccgtgatgactctagagagtccacccatatctgcaaatccacttaaatttgatgcacactcttatgaggttgggatgttagcaggaggtagtagcggagg |
48422018 |
T |
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| Q |
239 |
ccaagtctatgtttggacattgagctaagatttttattctataatatgcagcacaaatt-ttggagtccccatgttgttttggatgtggtattgcagcac |
337 |
Q |
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| T |
48422017 |
ccaggtctatgtttggacattgagctaagatttttattctataatatgcaacacaaattctctgagtccccgtactgttttggatgtggtattgcagcac |
48421918 |
T |
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| Q |
338 |
acattctcga |
347 |
Q |
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| T |
48421917 |
aaattctcga |
48421908 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 9 - 95
Target Start/End: Complemental strand, 48417026 - 48416940
Alignment:
| Q |
9 |
catatgttaaaaaggaatttatttgattcatgacaaaagcagttgacatttgttatcttgattttatggtaacagggcaatatgggg |
95 |
Q |
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| T |
48417026 |
catatgttaaaaaggaatttatttgattcatgacaaaagcagttgacatttgttatcttgattttatggtaacagggcaatatgggg |
48416940 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 101 - 281
Target Start/End: Complemental strand, 48410581 - 48410398
Alignment:
| Q |
101 |
gaaaagaggagttgatgttgtctctgcagttcaaaaggcaaccgtgatgactctagaaagcccactcatatctgcaattccacttaaatttgatgcacac |
200 |
Q |
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| T |
48410581 |
gaaaagaggagttgacgttgtctccacagttcaaagggcaacaataaagacactacagagcccacacatatctgcaattccatgcagatttgatgcaaac |
48410482 |
T |
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| Q |
201 |
tcttatgaggttgggatgttagcaggagct---agccggggccaagtctatgtttggacattgagctaagatttttattctata |
281 |
Q |
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| T |
48410481 |
tcttgtgaggttgggatgctagcaggagctacaagtggaggccaggtctatatctggacatcaagctaagaattttattctata |
48410398 |
T |
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