View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2966_high_10 (Length: 368)
Name: NF2966_high_10
Description: NF2966
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2966_high_10 |
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Alignment Details
Target: chr5 (Bit Score: 220; Significance: 1e-121; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 19 - 358
Target Start/End: Complemental strand, 29597988 - 29597649
Alignment:
| Q |
19 |
atgataattcaactagaacttataatgttgtggttttgtgttctagtgaggtgaaagttttcggattcaatgataatatttggagaaaaattgcaagttt |
118 |
Q |
| |
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|||||| |||||||||||||||||||| |||||||||||||||||| ||||||||||||||| | ||| ||||||||||||||||||||||| |||||| |
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| T |
29597988 |
atgatatttcaactagaacttataatgctgtggttttgtgttctagggaggtgaaagttttccgtttcggtgataatatttggagaaaaattgtaagttt |
29597889 |
T |
|
| Q |
119 |
tactccttataaccttgttgacactcttggctatagttatgtgaaccaaggagtgcatttgagtggcactattagctggatttccttttatccaaaggat |
218 |
Q |
| |
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|||||||||||||||| |||| || ||||||| ||||||||||||||||||||||||||||||||||||| ||| |||||| ||| |||||| |||||| |
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| T |
29597888 |
tactccttataaccttcttgatacccttggctgtagttatgtgaaccaaggagtgcatttgagtggcactgttaactggatatccatttatctgaaggat |
29597789 |
T |
|
| Q |
219 |
gttactgttgagaaatttgtgattatctcgcttgatcttgctactgagacatacaagaaatcgctaccccctcctggagcagttaattcagtgtcaccat |
318 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| | | ||||||||||| || ||||||| |||||||| || |
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| T |
29597788 |
gttactgttgagaaatttgtgattatctcgcttgatcttgctactgagacatacaggaaattgttgccccctcctggtgctgttaatttagtgtcacgat |
29597689 |
T |
|
| Q |
319 |
atattgaaccaattattgctgttttgatggtccgcctttg |
358 |
Q |
| |
|
||| |||||||| ||||||||||||| ||| ||||||||| |
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| T |
29597688 |
atactgaaccaactattgctgttttgctggaccgcctttg |
29597649 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 19 - 348
Target Start/End: Original strand, 29647308 - 29647639
Alignment:
| Q |
19 |
atgataattcaactagaacttataatgttgtggttttgtgttctagtgaggtgaaagttttcggattcaatgataatatttggagaaaaattgcaagttt |
118 |
Q |
| |
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||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| | ||| |||||||||||||||||||||||||||||| |
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|
| T |
29647308 |
atgataattcaactagaacttataatgccgtggttttgtgttctagtgaggtgaaagttttccgtttcggtgataatatttggagaaaaattgcaagttt |
29647407 |
T |
|
| Q |
119 |
tactccttataaccttgttgacactcttggctatagttatgtgaaccaa---ggagtgcatttgagtggcactattagctggatttccttttatccaaag |
215 |
Q |
| |
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|||||||||||||||||||| || |||||| ||||| |||||||||| |||||| |||||||||||||| ||| ||||||||| ||||||| || |
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|
| T |
29647408 |
-actccttataaccttgttgatacccttggccatagtgttgtgaaccaacaaggagtgtatttgagtggcactgttaattggatttccatttatccggag |
29647506 |
T |
|
| Q |
216 |
gatgttactgttgagaaatttgtgattatctcgcttgatcttgctactgagacatacaagaaatcgctaccccctcctggagcagttaattcagtgtcac |
315 |
Q |
| |
|
||||||||| |||| ||||||| |||||||||||||||| ||| ||| ||||||||||||||| |||||||||||||||||||||||||| |||| ||| |
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|
| T |
29647507 |
gatgttactcttgataaatttgcgattatctcgcttgatattggtaccgagacatacaagaaactgctaccccctcctggagcagttaatttagtgccac |
29647606 |
T |
|
| Q |
316 |
catatattgaaccaattattgctgttttgatgg |
348 |
Q |
| |
|
||||||||||||||| ||||||| |||||||| |
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|
| T |
29647607 |
catatattgaaccaactattgctactttgatgg |
29647639 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 173; E-Value: 6e-93
Query Start/End: Original strand, 19 - 338
Target Start/End: Original strand, 29641990 - 29642312
Alignment:
| Q |
19 |
atgataattcaactagaacttataatgttgtggttttgtgttctagtgaggtgaaagttttcggattcaatgataatatttggagaaaaattgcaagttt |
118 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||| ||| |||||||||||||||||||||||||| ||| |
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|
| T |
29641990 |
atgataattcaactagaacttataatgcggtggttttgtgtactagtgaggtgaaagttttccatttcggtgataatatttggagaaaaattgcaaattt |
29642089 |
T |
|
| Q |
119 |
tactccttataaccttgttgacactcttggctatagttatgtgaac---caaggagtgcatttgagtggcactattagctggatttccttttatccaaag |
215 |
Q |
| |
|
||||||||||||||||||||| || |||||| || | ||||||| ||||||||| |||||||||||||| ||| ||||||||| ||||||| || |
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|
| T |
29642090 |
tactccttataaccttgttgatacccttggccatgatggtgtgaaccaacaaggagtgtatttgagtggcactgttaattggatttccatttatccggag |
29642189 |
T |
|
| Q |
216 |
gatgttactgttgagaaatttgtgattatctcgcttgatcttgctactgagacatacaagaaatcgctaccccctcctggagcagttaattcagtgtcac |
315 |
Q |
| |
|
||||||||| |||| ||||||| |||||||||||||||||||| ||| ||||||||||||||| |||||||||||||||||||||||||| |||| ||| |
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| T |
29642190 |
gatgttactcttgataaatttgcgattatctcgcttgatcttggtaccgagacatacaagaaactgctaccccctcctggagcagttaatttagtgccac |
29642289 |
T |
|
| Q |
316 |
catatattgaaccaattattgct |
338 |
Q |
| |
|
|||||| |||||||| ||||||| |
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|
| T |
29642290 |
catatactgaaccaactattgct |
29642312 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 63; Significance: 3e-27; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 19 - 187
Target Start/End: Complemental strand, 19326427 - 19326262
Alignment:
| Q |
19 |
atgataattcaactagaacttataatgttgtggttttgtgttctagtgaggtgaaagttttcggattcaatgataatatttggagaaaaattgcaagttt |
118 |
Q |
| |
|
|||||||||||||| |||||||||| || ||| | ||| ||||||||||||||||||||||| | || | |||||||||||||||||||||| |||| || |
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|
| T |
19326427 |
atgataattcaactggaacttataaggtggtgctcttgagttctagtgaggtgaaagttttcagtttgagtgataatatttggagaaaaatttcaagctt |
19326328 |
T |
|
| Q |
119 |
tactccttataaccttgttgacactcttggctatagttatgtgaaccaaggagtgcatttgagtggcac |
187 |
Q |
| |
|
| |||||| | ||| || || |||||||||| |||| | |||| |||||||| ||||||||||||| |
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|
| T |
19326327 |
tcctccttttgaccatgctgttactcttggctttagtaa---gaacgaaggagtgtatttgagtggcac |
19326262 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 213 - 275
Target Start/End: Complemental strand, 19344811 - 19344749
Alignment:
| Q |
213 |
aaggatgttactgttgagaaatttgtgattatctcgcttgatcttgctactgagacatacaag |
275 |
Q |
| |
|
|||||| ||||||||| |||||||||||||||||| |||||||||| ||| |||||||||||| |
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|
| T |
19344811 |
aaggatattactgttgggaaatttgtgattatctcccttgatcttggtaccgagacatacaag |
19344749 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 220 - 275
Target Start/End: Original strand, 19374608 - 19374663
Alignment:
| Q |
220 |
ttactgttgagaaatttgtgattatctcgcttgatcttgctactgagacatacaag |
275 |
Q |
| |
|
||||||||| |||||||||||||||||| |||||||||| ||| |||||||||||| |
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|
| T |
19374608 |
ttactgttgggaaatttgtgattatctcccttgatcttggtaccgagacatacaag |
19374663 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 213 - 275
Target Start/End: Complemental strand, 19326221 - 19326159
Alignment:
| Q |
213 |
aaggatgttactgttgagaaatttgtgattatctcgcttgatcttgctactgagacatacaag |
275 |
Q |
| |
|
|||||| |||| || ||| ||||| |||||||||| |||||||||| |||||||||||||||| |
|
|
| T |
19326221 |
aaggatattaccgtcgagcaatttatgattatctcccttgatcttggtactgagacatacaag |
19326159 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 224 - 275
Target Start/End: Original strand, 26256620 - 26256671
Alignment:
| Q |
224 |
tgttgagaaatttgtgattatctcgcttgatcttgctactgagacatacaag |
275 |
Q |
| |
|
||||||| ||||||||||||| |||||||||||| | || |||||||||||| |
|
|
| T |
26256620 |
tgttgagcaatttgtgattatttcgcttgatctttcaacggagacatacaag |
26256671 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 36; Significance: 0.00000000003; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 19 - 126
Target Start/End: Complemental strand, 24254877 - 24254770
Alignment:
| Q |
19 |
atgataattcaactagaacttataatgttgtggttttgtgttctagtgaggtgaaagttttcggattcaatgataatatttggagaaaaattgcaagttt |
118 |
Q |
| |
|
|||||||||||||| |||||||||| || ||| | | |||| |||| | ||||||||||| | || || ||||||||||||||||||||| |||| || |
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|
| T |
24254877 |
atgataattcaactggaacttataaggtggtgttcatatgttatagtaaactgaaagttttcagtttgaaggataatatttggagaaaaatttcaaggtt |
24254778 |
T |
|
| Q |
119 |
tactcctt |
126 |
Q |
| |
|
| |||||| |
|
|
| T |
24254777 |
tcctcctt |
24254770 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 213 - 275
Target Start/End: Complemental strand, 24254662 - 24254600
Alignment:
| Q |
213 |
aaggatgttactgttgagaaatttgtgattatctcgcttgatcttgctactgagacatacaag |
275 |
Q |
| |
|
|||||| |||| |||||| |||| |||||||||| |||||||||| |||||||||||||||| |
|
|
| T |
24254662 |
aaggatattaccgttgagcaattcatgattatctcccttgatcttggtactgagacatacaag |
24254600 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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