View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2966_high_17 (Length: 291)
Name: NF2966_high_17
Description: NF2966
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2966_high_17 |
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Alignment Details
Target: chr7 (Bit Score: 165; Significance: 3e-88; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 165; E-Value: 3e-88
Query Start/End: Original strand, 68 - 289
Target Start/End: Original strand, 14769289 - 14769509
Alignment:
| Q |
68 |
acaaaaggaaggaattggttagatgtagaatatttttaaataaatagatattggtattttatataccnnnnnnnntagatattggtattttattattggt |
167 |
Q |
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| T |
14769289 |
acaaaaggaaggaattggttagatgtagaatatttttaaataaatagatattggtattttatataccaaaaacaatagatattggtattttattattggt |
14769388 |
T |
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| Q |
168 |
taaacaaaactataatgtctcaatttacaaaattaatgtgtggttaaaatgaaattgaaggannnnnnnacctacattagattattttatttgtacaagt |
267 |
Q |
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| T |
14769389 |
taaacaaaactataatgtctcaatttacaaaattaatgtgtggttaaaatg-aattgaaggatctttttacctacattagattattttatttgtacaagt |
14769487 |
T |
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| Q |
268 |
taactcaattgatgatgtccat |
289 |
Q |
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||||||||||||| |||||||| |
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| T |
14769488 |
taactcaattgataatgtccat |
14769509 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 165; E-Value: 3e-88
Query Start/End: Original strand, 68 - 289
Target Start/End: Original strand, 15219740 - 15219960
Alignment:
| Q |
68 |
acaaaaggaaggaattggttagatgtagaatatttttaaataaatagatattggtattttatataccnnnnnnnntagatattggtattttattattggt |
167 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
15219740 |
acaaaaggaaggaattggttagatgtagaatatttttaaataaatagatattggtattttatataccaaaaacaatagatattggtattttattattggt |
15219839 |
T |
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| Q |
168 |
taaacaaaactataatgtctcaatttacaaaattaatgtgtggttaaaatgaaattgaaggannnnnnnacctacattagattattttatttgtacaagt |
267 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||| |
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| T |
15219840 |
taaacaaaactataatgtctcaatttacaaaattaatgtgtggttaaaatg-aattgaaggatctttttacctacattagattattttatttgtacaagt |
15219938 |
T |
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| Q |
268 |
taactcaattgatgatgtccat |
289 |
Q |
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||||||||||||| |||||||| |
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| T |
15219939 |
taactcaattgataatgtccat |
15219960 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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