View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2966_high_24 (Length: 255)

Name: NF2966_high_24
Description: NF2966
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2966_high_24
NF2966_high_24
[»] chr7 (7 HSPs)
chr7 (1-241)||(44572128-44572372)
chr7 (38-94)||(45215792-45215848)
chr7 (2-59)||(22291130-22291187)
chr7 (20-77)||(27616664-27616721)
chr7 (21-94)||(10678642-10678715)
chr7 (47-94)||(22291192-22291239)
chr7 (19-58)||(46014552-46014591)
[»] chr2 (10 HSPs)
chr2 (2-94)||(26576384-26576476)
chr2 (2-94)||(13039199-13039291)
chr2 (19-94)||(4747819-4747894)
chr2 (3-72)||(9929974-9930043)
chr2 (47-94)||(32200612-32200659)
chr2 (2-56)||(34409369-34409423)
chr2 (19-94)||(15989806-15989881)
chr2 (47-94)||(17651633-17651680)
chr2 (21-94)||(38783517-38783590)
chr2 (47-94)||(41849371-41849418)
[»] chr4 (14 HSPs)
chr4 (2-87)||(54305941-54306026)
chr4 (2-94)||(3420116-3420208)
chr4 (25-94)||(7762757-7762826)
chr4 (2-59)||(55681002-55681059)
chr4 (2-58)||(40288939-40288995)
chr4 (2-50)||(45612230-45612278)
chr4 (47-94)||(55681064-55681111)
chr4 (19-59)||(658249-658289)
chr4 (21-57)||(44508013-44508049)
chr4 (37-92)||(29988025-29988080)
chr4 (35-94)||(31734744-31734803)
chr4 (21-59)||(2641477-2641515)
chr4 (2-56)||(32595271-32595325)
chr4 (46-94)||(35530449-35530497)
[»] chr6 (11 HSPs)
chr6 (2-94)||(12844225-12844317)
chr6 (2-94)||(19294650-19294742)
chr6 (2-59)||(34013802-34013859)
chr6 (2-59)||(34010991-34011048)
chr6 (2-55)||(14494226-14494279)
chr6 (47-94)||(34010939-34010986)
chr6 (48-94)||(34013865-34013911)
chr6 (19-93)||(2602413-2602487)
chr6 (8-59)||(17540340-17540392)
chr6 (47-94)||(14494170-14494217)
chr6 (20-56)||(17261926-17261962)
[»] chr1 (6 HSPs)
chr1 (19-94)||(48632325-48632400)
chr1 (16-81)||(23432216-23432281)
chr1 (2-57)||(32741165-32741220)
chr1 (19-56)||(23636311-23636348)
chr1 (2-58)||(16426748-16426803)
chr1 (2-48)||(3387963-3388009)
[»] chr3 (5 HSPs)
chr3 (19-94)||(25092128-25092203)
chr3 (47-94)||(43921668-43921715)
chr3 (21-83)||(10515917-10515979)
chr3 (2-51)||(30121065-30121114)
chr3 (19-59)||(43921720-43921760)
[»] scaffold0325 (1 HSPs)
scaffold0325 (26-94)||(13058-13126)
[»] chr8 (7 HSPs)
chr8 (2-58)||(18393349-18393405)
chr8 (19-70)||(13097771-13097822)
chr8 (47-94)||(15131736-15131783)
chr8 (20-94)||(2874850-2874924)
chr8 (23-94)||(15850204-15850275)
chr8 (25-94)||(14469736-14469805)
chr8 (2-59)||(37855330-37855387)
[»] chr5 (3 HSPs)
chr5 (21-71)||(32676409-32676459)
chr5 (37-94)||(40838267-40838324)
chr5 (53-93)||(41815339-41815379)
[»] scaffold1723 (1 HSPs)
scaffold1723 (2-94)||(142-231)


Alignment Details
Target: chr7 (Bit Score: 220; Significance: 1e-121; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 1 - 241
Target Start/End: Complemental strand, 44572372 - 44572128
Alignment:
Q  1 gtatttaggacaccggttcgacacgtgtcgtacgagtgtcataggagtgtcggacaccgcgacacgcctagtcgtagaggtgtccgtgcttcat----cc 96  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    ||    
T  44572372 gtatttaggacaccggttcgacacgtgtcgtacgagtgtcataggagtgtcggacaccgcgacacgcctagtcgtagaggtgtccgtgcttcatagttcc 44572273  T
Q  97 tttcagttcaggaccacccaactcaaaaatgcattactcaaaaactttcacatacatactgcaaacgcatgcattccatttcacctacaaatttttcaaa 196  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  44572272 tttcagttcaggaccacccaactcaaaaatgcattactcaaaaactttcacatacatactacaaacgcatgcattccatttcacctacaaatttttcaaa 44572173  T
Q  197 accaactttcaaaggtttttagaagcacagcattacatgcaaatt 241  Q
    ||||||||||||||||||||||||||||| |||||||||||||||    
T  44572172 accaactttcaaaggtttttagaagcacaacattacatgcaaatt 44572128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 38 - 94
Target Start/End: Complemental strand, 45215848 - 45215792
Alignment:
Q  38 gtcataggagtgtcggacaccgcgacacgcctagtcgtagaggtgtccgtgcttcat 94  Q
    |||||||||||||||||||||||||||||||||||| | ||||||||||||||||||    
T  45215848 gtcataggagtgtcggacaccgcgacacgcctagtcctggaggtgtccgtgcttcat 45215792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 2 - 59
Target Start/End: Original strand, 22291130 - 22291187
Alignment:
Q  2 tatttaggacaccggttcgacacgtgtcgtacgagtgtcataggagtgtcggacaccg 59  Q
    |||||||||||||||||| |||||||| ||||| ||||||||||||||||||||||||    
T  22291130 tatttaggacaccggttcaacacgtgtggtacgggtgtcataggagtgtcggacaccg 22291187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 20 - 77
Target Start/End: Original strand, 27616664 - 27616721
Alignment:
Q  20 gacacgtgtcgtacgagtgtcataggagtgtcggacaccgcgacacgcctagtcgtag 77  Q
    |||||||||||||||||||||||| |||||||||||||| ||||| ||||||||||||    
T  27616664 gacacgtgtcgtacgagtgtcatatgagtgtcggacaccacgacatgcctagtcgtag 27616721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 21 - 94
Target Start/End: Original strand, 10678642 - 10678715
Alignment:
Q  21 acacgtgtcgtacgagtgtcataggagtgtcggacaccgcgacacgcctagtcgtagaggtgtccgtgcttcat 94  Q
    |||||||||| || ||| | |||||||| |||||||||||||||||  ||||| ||||||||| ||||||||||    
T  10678642 acacgtgtcggacaagtattataggagtatcggacaccgcgacacggttagtcctagaggtgttcgtgcttcat 10678715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 47 - 94
Target Start/End: Original strand, 22291192 - 22291239
Alignment:
Q  47 gtgtcggacaccgcgacacgcctagtcgtagaggtgtccgtgcttcat 94  Q
    ||||||||||| |||||| |||||||| ||||||| ||||||||||||    
T  22291192 gtgtcggacactgcgacatgcctagtcctagaggtttccgtgcttcat 22291239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 19 - 58
Target Start/End: Original strand, 46014552 - 46014591
Alignment:
Q  19 cgacacgtgtcgtacgagtgtcataggagtgtcggacacc 58  Q
    |||||| ||||||||||||||||||||||| |||||||||    
T  46014552 cgacacatgtcgtacgagtgtcataggagtttcggacacc 46014591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 77; Significance: 8e-36; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 2 - 94
Target Start/End: Original strand, 26576384 - 26576476
Alignment:
Q  2 tatttaggacaccggttcgacacgtgtcgtacgagtgtcataggagtgtcggacaccgcgacacgcctagtcgtagaggtgtccgtgcttcat 94  Q
    |||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||    
T  26576384 tatttaagacaccggttcgacacgtgtcgtacgggtgtcataggagtgtcggacaccgcgacacgtctagtcctagaggtgtccgtgcttcat 26576476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 2 - 94
Target Start/End: Original strand, 13039199 - 13039291
Alignment:
Q  2 tatttaggacaccggttcgacacgtgtcgtacgagtgtcataggagtgtcggacaccgcgacacgcctagtcgtagaggtgtccgtgcttcat 94  Q
    |||||| |||||||| |||||| |||||||||| |  ||||| |||||| |||||||||||||||||||||| || |||||||||||||||||    
T  13039199 tatttaagacaccggatcgacatgtgtcgtacggggttcatatgagtgttggacaccgcgacacgcctagtcctataggtgtccgtgcttcat 13039291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 19 - 94
Target Start/End: Complemental strand, 4747894 - 4747819
Alignment:
Q  19 cgacacgtgtcgtacgagtgtcataggagtgtcggacaccgcgacacgcctagtcgtagaggtgtccgtgcttcat 94  Q
    |||||| || ||||| |||||||||||| ||||||||||| |||||||||||||| ||||||||||||||||||||    
T  4747894 cgacacatgccgtacaagtgtcataggattgtcggacaccacgacacgcctagtcctagaggtgtccgtgcttcat 4747819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 3 - 72
Target Start/End: Original strand, 9929974 - 9930043
Alignment:
Q  3 atttaggacaccggttcgacacgtgtcgtacgagtgtcataggagtgtcggacaccgcgacacgcctagt 72  Q
    ||||||||||||| || ||||||| |||||||||||||||||||||||||||||| || ||| |||||||    
T  9929974 atttaggacaccgttttgacacgtttcgtacgagtgtcataggagtgtcggacacagccacatgcctagt 9930043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 47 - 94
Target Start/End: Complemental strand, 32200659 - 32200612
Alignment:
Q  47 gtgtcggacaccgcgacacgcctagtcgtagaggtgtccgtgcttcat 94  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||    
T  32200659 gtgtcggacaccgcgacacgcctagtcctagaggtgtccgtgcttcat 32200612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 2 - 56
Target Start/End: Complemental strand, 34409423 - 34409369
Alignment:
Q  2 tatttaggacaccggttcgacacgtgtcgtacgagtgtcataggagtgtcggaca 56  Q
    ||||||||||||||||| ||||||||||||||| || ||||||||||||||||||    
T  34409423 tatttaggacaccggtttgacacgtgtcgtacgggtatcataggagtgtcggaca 34409369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 19 - 94
Target Start/End: Complemental strand, 15989881 - 15989806
Alignment:
Q  19 cgacacgtgtcgtacgagtgtcataggagtgtcggacaccgcgacacgcctagtcgtagaggtgtccgtgcttcat 94  Q
    ||||| |||||||| ||||||||||||||||| |||||| || ||||| ||||||  |||||||| ||||||||||    
T  15989881 cgacatgtgtcgtaagagtgtcataggagtgttggacactgcaacacgtctagtccaagaggtgttcgtgcttcat 15989806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 47 - 94
Target Start/End: Original strand, 17651633 - 17651680
Alignment:
Q  47 gtgtcggacaccgcgacacgcctagtcgtagaggtgtccgtgcttcat 94  Q
    |||||||||||||||||||||||| || || |||||||||||||||||    
T  17651633 gtgtcggacaccgcgacacgcctaatcctaaaggtgtccgtgcttcat 17651680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 21 - 94
Target Start/End: Complemental strand, 38783590 - 38783517
Alignment:
Q  21 acacgtgtcgtacgagtgtcataggagtgtcggacaccgcgacacgcctagtcgtagaggtgtccgtgcttcat 94  Q
    |||| |||| |||| ||||||||||||||||||||| || |||||||||| |  |||||||||  |||||||||    
T  38783590 acacatgtcatacgggtgtcataggagtgtcggacatcgtgacacgcctaattttagaggtgtttgtgcttcat 38783517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 47 - 94
Target Start/End: Original strand, 41849371 - 41849418
Alignment:
Q  47 gtgtcggacaccgcgacacgcctagtcgtagaggtgtccgtgcttcat 94  Q
    ||||| |||||||||||||||||| |  ||||||||||||||||||||    
T  41849371 gtgtctgacaccgcgacacgcctaattctagaggtgtccgtgcttcat 41849418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 70; Significance: 1e-31; HSPs: 14)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 2 - 87
Target Start/End: Original strand, 54305941 - 54306026
Alignment:
Q  2 tatttaggacaccggttcgacacgtgtcgtacgagtgtcataggagtgtcggacaccgcgacacgcctagtcgtagaggtgtccgt 87  Q
    ||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||| |||||||||||||    
T  54305941 tatttaggacatcggttcgacacgtgtcgtacgggtgtcataggagtgtcggacaccgtgacacgcctagtcctagaggtgtccgt 54306026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 2 - 94
Target Start/End: Original strand, 3420116 - 3420208
Alignment:
Q  2 tatttaggacaccggttcgacacgtgtcgtacgagtgtcataggagtgtcggacaccgcgacacgcctagtcgtagaggtgtccgtgcttcat 94  Q
    |||||||||||||| ||||||||||||||||||| ||||||| ||||||| |||||||| |||||||||||| ||||||||||||||||||||    
T  3420116 tatttaggacaccgattcgacacgtgtcgtacgattgtcataagagtgtcagacaccgcaacacgcctagtcttagaggtgtccgtgcttcat 3420208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 25 - 94
Target Start/End: Complemental strand, 7762826 - 7762757
Alignment:
Q  25 gtgtcgtacgagtgtcataggagtgtcggacaccgcgacacgcctagtcgtagaggtgtccgtgcttcat 94  Q
    ||||| ||||||||||||||||||||| |||||||| | ||||||| || ||||||||||||||||||||    
T  7762826 gtgtcatacgagtgtcataggagtgtcagacaccgctatacgcctaatcctagaggtgtccgtgcttcat 7762757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 2 - 59
Target Start/End: Original strand, 55681002 - 55681059
Alignment:
Q  2 tatttaggacaccggttcgacacgtgtcgtacgagtgtcataggagtgtcggacaccg 59  Q
    ||||||||||| |||||||||| ||||||||| |||||||||||||||||||||||||    
T  55681002 tatttaggacagcggttcgacatgtgtcgtacaagtgtcataggagtgtcggacaccg 55681059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 2 - 58
Target Start/End: Complemental strand, 40288995 - 40288939
Alignment:
Q  2 tatttaggacaccggttcgacacgtgtcgtacgagtgtcataggagtgtcggacacc 58  Q
    ||||||| ||||||||||||||||| |||||||||||| |||||| |||||||||||    
T  40288995 tatttagaacaccggttcgacacgtatcgtacgagtgttataggaatgtcggacacc 40288939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 2 - 50
Target Start/End: Complemental strand, 45612278 - 45612230
Alignment:
Q  2 tatttaggacaccggttcgacacgtgtcgtacgagtgtcataggagtgt 50  Q
    ||||||||||||||||| ||||||||||||||| |||||||||||||||    
T  45612278 tatttaggacaccggtttgacacgtgtcgtacgggtgtcataggagtgt 45612230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 47 - 94
Target Start/End: Original strand, 55681064 - 55681111
Alignment:
Q  47 gtgtcggacaccgcgacacgcctagtcgtagaggtgtccgtgcttcat 94  Q
    ||||||||||||||||||||||||||| | ||||||||||||||||||    
T  55681064 gtgtcggacaccgcgacacgcctagtcctcgaggtgtccgtgcttcat 55681111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 19 - 59
Target Start/End: Complemental strand, 658289 - 658249
Alignment:
Q  19 cgacacgtgtcgtacgagtgtcataggagtgtcggacaccg 59  Q
    ||||||||||||||| |||||||||| ||||||||||||||    
T  658289 cgacacgtgtcgtacaagtgtcatagaagtgtcggacaccg 658249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 21 - 57
Target Start/End: Original strand, 44508013 - 44508049
Alignment:
Q  21 acacgtgtcgtacgagtgtcataggagtgtcggacac 57  Q
    ||||||||||||||||||||||||||||||| |||||    
T  44508013 acacgtgtcgtacgagtgtcataggagtgtcagacac 44508049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 37 - 92
Target Start/End: Original strand, 29988025 - 29988080
Alignment:
Q  37 tgtcataggagtgtcggacaccgcgacacgcctagtcgtagaggtgtccgtgcttc 92  Q
    ||||||||||| |||  ||||| |||||||||||||  ||||||||||||||||||    
T  29988025 tgtcataggagcgtcaaacaccacgacacgcctagttctagaggtgtccgtgcttc 29988080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 35 - 94
Target Start/End: Original strand, 31734744 - 31734803
Alignment:
Q  35 agtgtcataggagtgtcggacaccgcgacacgcctagtcgtagaggtgtccgtgcttcat 94  Q
    ||||||||| ||||||||||||||| |||||| ||| || || |||| ||||||||||||    
T  31734744 agtgtcataagagtgtcggacaccgtgacacggctaatcctaaaggtttccgtgcttcat 31734803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 21 - 59
Target Start/End: Original strand, 2641477 - 2641515
Alignment:
Q  21 acacgtgtcgtacgagtgtcataggagtgtcggacaccg 59  Q
    |||||||||||||||||||||| |||||||| |||||||    
T  2641477 acacgtgtcgtacgagtgtcattggagtgtccgacaccg 2641515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 2 - 56
Target Start/End: Original strand, 32595271 - 32595325
Alignment:
Q  2 tatttaggacaccggttcgacacgtgtcgtacgagtgtcataggagtgtcggaca 56  Q
    |||||| |||||  ||| ||||||||||||||||||||||| | |||||||||||    
T  32595271 tatttaagacacttgttggacacgtgtcgtacgagtgtcattgaagtgtcggaca 32595325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 46 - 94
Target Start/End: Original strand, 35530449 - 35530497
Alignment:
Q  46 agtgtcggacaccgcgacacgcctagtcgtagaggtgtccgtgcttcat 94  Q
    |||||||||||||  |||||||||| || || |||||||||||||||||    
T  35530449 agtgtcggacaccatgacacgcctaatcctaaaggtgtccgtgcttcat 35530497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 69; Significance: 5e-31; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 2 - 94
Target Start/End: Original strand, 12844225 - 12844317
Alignment:
Q  2 tatttaggacaccggttcgacacgtgtcgtacgagtgtcataggagtgtcggacaccgcgacacgcctagtcgtagaggtgtccgtgcttcat 94  Q
    ||||||||||||||||||||||||||||||||  |||| |||||||||||||||||||||||| |||||||  ||||||||||||||||||||    
T  12844225 tatttaggacaccggttcgacacgtgtcgtacaggtgttataggagtgtcggacaccgcgacatgcctagttctagaggtgtccgtgcttcat 12844317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 2 - 94
Target Start/End: Original strand, 19294650 - 19294742
Alignment:
Q  2 tatttaggacaccggttcgacacgtgtcgtacgagtgtcataggagtgtcggacaccgcgacacgcctagtcgtagaggtgtccgtgcttcat 94  Q
    ||||| ||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||| || |||||||||| |||||||||    
T  19294650 tattttggacaccggttcgacacgtgtcgtacgggtgtcacaggagtgtcggacaccgcgacacgcctaatcctagaggtgtcggtgcttcat 19294742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 2 - 59
Target Start/End: Original strand, 34013802 - 34013859
Alignment:
Q  2 tatttaggacaccggttcgacacgtgtcgtacgagtgtcataggagtgtcggacaccg 59  Q
    |||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||    
T  34013802 tatttaggacaccggttcgacacgtgtcgtacaagtgtcattggagtgtcggacaccg 34013859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 2 - 59
Target Start/End: Complemental strand, 34011048 - 34010991
Alignment:
Q  2 tatttaggacaccggttcgacacgtgtcgtacgagtgtcataggagtgtcggacaccg 59  Q
    ||||||||||||||||||||||||||||| || |||||||| ||||||||||||||||    
T  34011048 tatttaggacaccggttcgacacgtgtcgcacaagtgtcattggagtgtcggacaccg 34010991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 2 - 55
Target Start/End: Complemental strand, 14494279 - 14494226
Alignment:
Q  2 tatttaggacaccggttcgacacgtgtcgtacgagtgtcataggagtgtcggac 55  Q
    |||||| ||||| |||||||||||||||||||| ||||||||||||||||||||    
T  14494279 tatttaagacactggttcgacacgtgtcgtacgggtgtcataggagtgtcggac 14494226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 47 - 94
Target Start/End: Complemental strand, 34010986 - 34010939
Alignment:
Q  47 gtgtcggacaccgcgacacgcctagtcgtagaggtgtccgtgcttcat 94  Q
    ||||||||||||||||||||||||||| | ||||||||||||||||||    
T  34010986 gtgtcggacaccgcgacacgcctagtccttgaggtgtccgtgcttcat 34010939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 48 - 94
Target Start/End: Original strand, 34013865 - 34013911
Alignment:
Q  48 tgtcggacaccgcgacacgcctagtcgtagaggtgtccgtgcttcat 94  Q
    |||||||||||||||||||||||||| | ||||||||||||||||||    
T  34013865 tgtcggacaccgcgacacgcctagtccttgaggtgtccgtgcttcat 34013911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 19 - 93
Target Start/End: Original strand, 2602413 - 2602487
Alignment:
Q  19 cgacacgtgtcgtacgagtgtcataggagtgtcggacaccgcgacacgcctagtcgtagaggtgtccgtgcttca 93  Q
    |||||||||||||| | ||||||||| |||||||||||| ||||||||| || || || ||||||| ||| ||||    
T  2602413 cgacacgtgtcgtatgtgtgtcatagcagtgtcggacactgcgacacgcttaatcctaaaggtgtctgtgtttca 2602487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 8 - 59
Target Start/End: Original strand, 17540340 - 17540392
Alignment:
Q  8 ggacaccggttcgacacgtgtcgtacgag-tgtcataggagtgtcggacaccg 59  Q
    ||||||||||||||| ||||| ||||| | |||||||||||||||||||||||    
T  17540340 ggacaccggttcgactcgtgttgtacgcggtgtcataggagtgtcggacaccg 17540392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 47 - 94
Target Start/End: Complemental strand, 14494217 - 14494170
Alignment:
Q  47 gtgtcggacaccgcgacacgcctagtcgtagaggtgtccgtgcttcat 94  Q
    |||||||| |||| |||||| |||||| ||||||||||||||||||||    
T  14494217 gtgtcggataccgtgacacgtctagtcctagaggtgtccgtgcttcat 14494170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 20 - 56
Target Start/End: Original strand, 17261926 - 17261962
Alignment:
Q  20 gacacgtgtcgtacgagtgtcataggagtgtcggaca 56  Q
    ||||||||||||||||||||| ||||||||| |||||    
T  17261926 gacacgtgtcgtacgagtgtcgtaggagtgttggaca 17261962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 60; Significance: 1e-25; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 19 - 94
Target Start/End: Complemental strand, 48632400 - 48632325
Alignment:
Q  19 cgacacgtgtcgtacgagtgtcataggagtgtcggacaccgcgacacgcctagtcgtagaggtgtccgtgcttcat 94  Q
    |||| |||||| |||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  48632400 cgacgcgtgtcatacgagtgtcatgggagtgtcggacaccgcgacacgcctagtcctagaggtgtccgtgcttcat 48632325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 16 - 81
Target Start/End: Original strand, 23432216 - 23432281
Alignment:
Q  16 gttcgacacgtgtcgtacgagtgtcataggagtgtcggacaccgcgacacgcctagtcgtagaggt 81  Q
    ||||||||||||||| || | |||||||||||||||||||||||||||||| |||||| |||||||    
T  23432216 gttcgacacgtgtcggacaaatgtcataggagtgtcggacaccgcgacacggctagtcctagaggt 23432281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 2 - 57
Target Start/End: Original strand, 32741165 - 32741220
Alignment:
Q  2 tatttaggacaccggttcgacacgtgtcgtacgagtgtcataggagtgtcggacac 57  Q
    |||||||||| | ||||||||||||||||||||||||||||||||||||| |||||    
T  32741165 tatttaggacgctggttcgacacgtgtcgtacgagtgtcataggagtgtcagacac 32741220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 19 - 56
Target Start/End: Original strand, 23636311 - 23636348
Alignment:
Q  19 cgacacgtgtcgtacgagtgtcataggagtgtcggaca 56  Q
    ||||||||||| ||||||||||||||||||||||||||    
T  23636311 cgacacgtgtcttacgagtgtcataggagtgtcggaca 23636348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 2 - 58
Target Start/End: Original strand, 16426748 - 16426803
Alignment:
Q  2 tatttaggacaccggttcgacacgtgtcgtacgagtgtcataggagtgtcggacacc 58  Q
    |||||| |||||  ||||||||| |||||||||||| ||||||||||||||||||||    
T  16426748 tatttatgacacttgttcgacacatgtcgtacgagt-tcataggagtgtcggacacc 16426803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 2 - 48
Target Start/End: Original strand, 3387963 - 3388009
Alignment:
Q  2 tatttaggacaccggttcgacacgtgtcgtacgagtgtcataggagt 48  Q
    |||||| |||||  || ||||||||||||||||||||||||||||||    
T  3387963 tatttaagacactagtccgacacgtgtcgtacgagtgtcataggagt 3388009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 52; Significance: 6e-21; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 19 - 94
Target Start/End: Complemental strand, 25092203 - 25092128
Alignment:
Q  19 cgacacgtgtcgtacgagtgtcataggagtgtcggacaccgcgacacgcctagtcgtagaggtgtccgtgcttcat 94  Q
    |||||||||| ||||||||||||||| |||||| ||||| ||||||| ||||||| ||||||||||||||||||||    
T  25092203 cgacacgtgttgtacgagtgtcatagaagtgtcagacactgcgacacacctagtcctagaggtgtccgtgcttcat 25092128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 47 - 94
Target Start/End: Complemental strand, 43921715 - 43921668
Alignment:
Q  47 gtgtcggacaccgcgacacgcctagtcgtagaggtgtccgtgcttcat 94  Q
    ||||||||||||| |||||| |||||| ||||||||||||||||||||    
T  43921715 gtgtcggacaccgtgacacggctagtcctagaggtgtccgtgcttcat 43921668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 21 - 83
Target Start/End: Complemental strand, 10515979 - 10515917
Alignment:
Q  21 acacgtgtcgtacgagtgtcataggagtgtcggacaccgcgacacgcctagtcgtagaggtgt 83  Q
    |||||| ||| || |||||||||||||| ||||||||||||| ||| |||||| |||||||||    
T  10515979 acacgtatcggacaagtgtcataggagtctcggacaccgcgatacgactagtcatagaggtgt 10515917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 2 - 51
Target Start/End: Original strand, 30121065 - 30121114
Alignment:
Q  2 tatttaggacaccggttcgacacgtgtcgtacgagtgtcataggagtgtc 51  Q
    ||||||||||| || | |||||||||||||||| || |||||||||||||    
T  30121065 tatttaggacatcgatccgacacgtgtcgtacgggtatcataggagtgtc 30121114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 19 - 59
Target Start/End: Complemental strand, 43921760 - 43921720
Alignment:
Q  19 cgacacgtgtcgtacgagtgtcataggagtgtcggacaccg 59  Q
    |||||||||||  || |||||||||||||||||||||||||    
T  43921760 cgacacgtgtcagacaagtgtcataggagtgtcggacaccg 43921720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0325 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: scaffold0325
Description:

Target: scaffold0325; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 26 - 94
Target Start/End: Original strand, 13058 - 13126
Alignment:
Q  26 tgtcgtacgagtgtcataggagtgtcggacaccgcgacacgcctagtcgtagaggtgtccgtgcttcat 94  Q
    ||||||||||||||||| ||||| ||||||| |||||||||||||||| ||| ||||||| ||||||||    
T  13058 tgtcgtacgagtgtcatcggagtatcggacatcgcgacacgcctagtcctaggggtgtccatgcttcat 13126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 45; Significance: 1e-16; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 2 - 58
Target Start/End: Complemental strand, 18393405 - 18393349
Alignment:
Q  2 tatttaggacaccggttcgacacgtgtcgtacgagtgtcataggagtgtcggacacc 58  Q
    ||||||||||||  ||||||||||||||||||||||||||||||||||||| |||||    
T  18393405 tatttaggacactagttcgacacgtgtcgtacgagtgtcataggagtgtcgaacacc 18393349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 19 - 70
Target Start/End: Original strand, 13097771 - 13097822
Alignment:
Q  19 cgacacgtgtcgtacgagtgtcataggagtgtcggacaccgcgacacgccta 70  Q
    |||| |||||||||||||||||||| ||||||||||||||||||||||||||    
T  13097771 cgactcgtgtcgtacgagtgtcatatgagtgtcggacaccgcgacacgccta 13097822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 47 - 94
Target Start/End: Complemental strand, 15131783 - 15131736
Alignment:
Q  47 gtgtcggacaccgcgacacgcctagtcgtagaggtgtccgtgcttcat 94  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||    
T  15131783 gtgtcggacaccgcgacacgcctagtcctagaggtgtccgtgcttcat 15131736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 20 - 94
Target Start/End: Complemental strand, 2874924 - 2874850
Alignment:
Q  20 gacacgtgtcgtacgagtgtcataggagtgtcggacaccgcgacacgcctagtcgtagaggtgtccgtgcttcat 94  Q
    ||||||||| ||| |||||||||||| |||||||| ||||||||| || || || ||||||||||||||||||||    
T  2874924 gacacgtgttgtatgagtgtcataggcgtgtcggagaccgcgacatgcgtaatcctagaggtgtccgtgcttcat 2874850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 23 - 94
Target Start/End: Complemental strand, 15850275 - 15850204
Alignment:
Q  23 acgtgtcgtacgagtgtcataggagtgtcggacaccgcgacacgcctagtcgtagaggtgtccgtgcttcat 94  Q
    |||||||||||||||||||||||||||||||||||||  | ||| || ||   |||||||||||||||||||    
T  15850275 acgtgtcgtacgagtgtcataggagtgtcggacaccgtaatacggctggttcaagaggtgtccgtgcttcat 15850204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 25 - 94
Target Start/End: Complemental strand, 14469805 - 14469736
Alignment:
Q  25 gtgtcgtacgagtgtcataggagtgtcggacaccgcgacacgcctagtcgtagaggtgtccgtgcttcat 94  Q
    |||||| | |||||||| |||||||||||||||| |||||| ||||||  ||||||||||| ||||||||    
T  14469805 gtgtcgcatgagtgtcaaaggagtgtcggacaccacgacacacctagtgctagaggtgtccatgcttcat 14469736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 2 - 59
Target Start/End: Original strand, 37855330 - 37855387
Alignment:
Q  2 tatttaggacaccggttcgacacgtgtcgtacgagtgtcataggagtgtcggacaccg 59  Q
    ||||||||||| ||||| ||||||||||| |||| |||||||||||||||| ||||||    
T  37855330 tatttaggacaacggtttgacacgtgtcgcacgaatgtcataggagtgtcgaacaccg 37855387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 21 - 71
Target Start/End: Complemental strand, 32676459 - 32676409
Alignment:
Q  21 acacgtgtcgtacgagtgtcataggagtgtcggacaccgcgacacgcctag 71  Q
    ||||||||||||| ||||||||||||||||||||||| ||||||| |||||    
T  32676459 acacgtgtcgtacaagtgtcataggagtgtcggacacggcgacacacctag 32676409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 37 - 94
Target Start/End: Original strand, 40838267 - 40838324
Alignment:
Q  37 tgtcataggagtgtcggacaccgcgacacgcctagtcgtagaggtgtccgtgcttcat 94  Q
    ||||||| |||||||||||||||||||||| || | | |||| |||||||||||||||    
T  40838267 tgtcatacgagtgtcggacaccgcgacacggcttgacctagaagtgtccgtgcttcat 40838324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 53 - 93
Target Start/End: Complemental strand, 41815379 - 41815339
Alignment:
Q  53 gacaccgcgacacgcctagtcgtagaggtgtccgtgcttca 93  Q
    ||||||| |||| |||||||| |||||||||||||||||||    
T  41815379 gacaccgtgacatgcctagtcctagaggtgtccgtgcttca 41815339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1723 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: scaffold1723
Description:

Target: scaffold1723; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 2 - 94
Target Start/End: Complemental strand, 231 - 142
Alignment:
Q  2 tatttaggacaccggttcgacacgtgtcgtacgagtgtcataggagtgtcggacaccgcgacacgcctagtcgtagaggtgtccgtgcttcat 94  Q
    ||||||||||||  || |||||| |||||||||||| ||||||||||    ||||| | |||||||||| || || |||||||||||||||||    
T  231 tatttaggacacttgtccgacacatgtcgtacgagtctcataggagt---tgacactgggacacgcctaatcatataggtgtccgtgcttcat 142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University