View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2966_high_3 (Length: 539)
Name: NF2966_high_3
Description: NF2966
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2966_high_3 |
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| [»] chr1 (5 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 217; Significance: 1e-119; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 311 - 539
Target Start/End: Complemental strand, 28991023 - 28990795
Alignment:
| Q |
311 |
aaatttaatttatttcagaaaacggagaacttatcaaatcgtcccacatctgtataagtttattcattaatttccttatcgtagaattattctttcacac |
410 |
Q |
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| T |
28991023 |
aaatttaatttatttcagaaaacggagaacttatcaaatcgtcccacatctctataagtttattcattaatttccttatcgtagaattattctttcacac |
28990924 |
T |
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| Q |
411 |
aagtttagtacaagattttatagtaaccatgttactaatgcaaaatatttactgactttgttaatcactaacttttgtcaaggattgtacaaaagcaata |
510 |
Q |
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| T |
28990923 |
aagtttagtacaagattttatagtaaccatgttactaatgcaaaatatttactgactttgttaatcactaacttttgtcaaggattgtacaaaagcaata |
28990824 |
T |
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| Q |
511 |
agtcttgacaaacagattgtaaaagcata |
539 |
Q |
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| T |
28990823 |
agtcttgacaaacagagtgtaaaggcata |
28990795 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 176; E-Value: 1e-94
Query Start/End: Original strand, 299 - 494
Target Start/End: Complemental strand, 29005864 - 29005669
Alignment:
| Q |
299 |
cctcttcaaataaaatttaatttatttcagaaaacggagaacttatcaaatcgtcccacatctgtataagtttattcattaatttccttatcgtagaatt |
398 |
Q |
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| T |
29005864 |
cctcttcaaataaaatttaatttatttcagaaaacggagaacttatcaaatcgtcctacatctgaataagtttattcattaatttccttattgtagaatt |
29005765 |
T |
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| Q |
399 |
attctttcacacaagtttagtacaagattttatagtaaccatgttactaatgcaaaatatttactgactttgttaatcactaacttttgtcaagga |
494 |
Q |
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| T |
29005764 |
attctttcgcacaagtttagtacaagattttatagtaaccatgttactaatgcaaaatatttactgactttgttaatcactgacttttgtcaagga |
29005669 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 152; E-Value: 3e-80
Query Start/End: Original strand, 9 - 212
Target Start/End: Complemental strand, 28999801 - 28999598
Alignment:
| Q |
9 |
gagatgaacatgagatgaaacatgtaatgtcttgtttgnnnnnnngacaaagaaacatctaatatcgtattgttattttaannnnnnnnnaaatatcaaa |
108 |
Q |
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| T |
28999801 |
gagatgaacatgagatgaaacatgtaatatcttgtttgtttttttgacaaagaaacatctaatatcgtattgttattttaatttttttttaaatatcaaa |
28999702 |
T |
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| Q |
109 |
tatatatatttctaccaaagtcgtcttcaaaaaccaacaaatatatatctacacttactgatatattatttattttctcaaaagaaatggtgaattttat |
208 |
Q |
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| T |
28999701 |
tatatatatttctaccaaagtcgtcttcaaaaaccaacaaatatatatctacacttactgatatattatttattttctcaaaagaaatggtgaattttat |
28999602 |
T |
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| Q |
209 |
ttgg |
212 |
Q |
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|||| |
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| T |
28999601 |
ttgg |
28999598 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 137; E-Value: 3e-71
Query Start/End: Original strand, 9 - 212
Target Start/End: Complemental strand, 29006156 - 29005952
Alignment:
| Q |
9 |
gagatgaacatgagatgaaacatgtaatgtcttgtttgnnnnnnngacaaagaaacatctaatatcgtattgttattttaannnnnnnnnaaa-tatcaa |
107 |
Q |
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| T |
29006156 |
gagatgaacatgagatgaaacatgtaatatcttgtttgtttttttgacaaagaaacatctaatatcgtattgttattttaatttttttttaaaatatcaa |
29006057 |
T |
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| Q |
108 |
atatatatatttctaccaaagtcgtcttcaaaaaccaacaaatatatatctacacttactgatatattatttattttctcaaaagaaatggtgaatttta |
207 |
Q |
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| T |
29006056 |
atatatatatttctaccaaagtcgtcttcaaaaaccaacaaatatttatctacacttactgatatattatttattttcttaaaagaaatggtgaatttta |
29005957 |
T |
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| Q |
208 |
tttgg |
212 |
Q |
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||||| |
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| T |
29005956 |
tttgg |
29005952 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 493 - 522
Target Start/End: Complemental strand, 6162334 - 6162305
Alignment:
| Q |
493 |
gattgtacaaaagcaataagtcttgacaaa |
522 |
Q |
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| T |
6162334 |
gattgtacaaaagcaataagtcttgacaaa |
6162305 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 493 - 522
Target Start/End: Original strand, 45332561 - 45332590
Alignment:
| Q |
493 |
gattgtacaaaagcaataagtcttgacaaa |
522 |
Q |
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| T |
45332561 |
gattgtacaaaagcaataagtcttgacaaa |
45332590 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 493 - 522
Target Start/End: Complemental strand, 21494375 - 21494346
Alignment:
| Q |
493 |
gattgtacaaaagcaataagtcttgacaaa |
522 |
Q |
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| T |
21494375 |
gattgtacaaaagcaataagtcttgacaaa |
21494346 |
T |
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