View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2966_high_36 (Length: 206)
Name: NF2966_high_36
Description: NF2966
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2966_high_36 |
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Alignment Details
Target: chr3 (Bit Score: 191; Significance: 1e-104; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 1 - 191
Target Start/End: Original strand, 33866381 - 33866571
Alignment:
| Q |
1 |
atgatcacgacattgattttagatcgaactatttagatttaagtgtgtcatgcatgcactcatgcatttacaacaaagaacccaaatatgagagatggag |
100 |
Q |
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| T |
33866381 |
atgatcacgacattgattttagatcgaactatttagatttaagtgtgtcatgcatgcactcatgcatttacaacaaagaacccaaatatgagagatggag |
33866480 |
T |
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| Q |
101 |
cttatgagtgatgtaatatggggaatggttgaaaggtaaagaaagtactaaattgattaagctggtctgtagatattttaatattattcct |
191 |
Q |
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| T |
33866481 |
cttatgagtgatgtaatatggggaatggttgaaaggtaaagaaagtactaaattgattaagctggtctgtagatattttaatattattcct |
33866571 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 60 - 164
Target Start/End: Original strand, 33855770 - 33855874
Alignment:
| Q |
60 |
tcatgcatttacaacaaagaacccaaatatgagagatggagcttatgagtgatgtaatatggggaatggttgaaaggtaaagaaagtactaaattgatta |
159 |
Q |
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| T |
33855770 |
tcatgcatttacaacaaagaatccaaatatgagatatggagctcatgagtgatgtaacatggagaatgattgaaaggtaaagaaagtactaaattgatta |
33855869 |
T |
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| Q |
160 |
agctg |
164 |
Q |
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| T |
33855870 |
agctg |
33855874 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 33855722 - 33855762
Alignment:
| Q |
1 |
atgatcacgacattgattttagatcgaactatttagattta |
41 |
Q |
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| T |
33855722 |
atgatcacgacattgattttagatataactatatagattta |
33855762 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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