View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2966_high_5 (Length: 411)
Name: NF2966_high_5
Description: NF2966
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2966_high_5 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 342; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 342; E-Value: 0
Query Start/End: Original strand, 1 - 393
Target Start/End: Original strand, 27642634 - 27643035
Alignment:
| Q |
1 |
acctgccaatgcatcttgcggaattgcatgacacgccactaagttccgcct---------ttggtccaaaaagtttccaagagaaaactatagctttgga |
91 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
27642634 |
acctgccaatgcatcttgcggaattgcatgacacgccactaagttccgcctaataggactttggtccaaaatgtttccaagagaaaactatagctttgga |
27642733 |
T |
|
| Q |
92 |
aagagccggagtttactgcatccgctcaaaaactatatcttctaaatccccgtactactttcccacaccaacaaattctccaacaatgcatgcacagtct |
191 |
Q |
| |
|
|||||||||| ||||||||| | |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
27642734 |
aagagccggactttactgcaactgctcaaaaactatatcttctaattccccgtactactttcccacaccaacaaattctccaacaatgcatacacagtct |
27642833 |
T |
|
| Q |
192 |
tcaccgagaactctccacccccgtccgatccccataatcacatattctccctctcttcccaccaaaaaccggccaaaagctccaaaagattgtctaccaa |
291 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27642834 |
tcaccgagaactctccacccccgtccgatccccataatcacatattctccctctcttcccaccaaaaaccggccaaaagctccaaaagattgtctaccaa |
27642933 |
T |
|
| Q |
292 |
gagcctttcccattcaaacaaatttctacgccaaaaagtcatagagcccccatttcctaccttacgaaccacttcccctttaaaccaattagaccccaca |
391 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27642934 |
gagcctttcccattcaaacaaatttctatgccaaaaagtcatagagcccccatttcctaccttacgaaccacttcccctttaaaccaattagaccccaca |
27643033 |
T |
|
| Q |
392 |
ac |
393 |
Q |
| |
|
|| |
|
|
| T |
27643034 |
ac |
27643035 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University